Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 7.4e-83 310.5 152 100.0
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 1.6e-82 309.3 152 99.3
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 1.6e-82 309.3 152 99.3
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 1.4e-81 306.2 152 98.0
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 2.4e-81 305.4 152 98.0
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 4.0e-81 304.7 152 98.0
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 4.0e-81 304.7 152 98.0
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 5.3e-81 304.3 152 97.4
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 5.3e-81 304.3 152 97.4
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 6.9e-81 303.9 152 96.7
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 1.2e-80 303.1 152 96.7
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 3.4e-80 301.6 152 96.1
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 4.5e-80 301.2 152 96.1
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 5.8e-80 300.8 152 96.1
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 2.9e-79 298.5 152 94.7
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 8.4e-79 297.0 152 94.1
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 8.4e-79 297.0 152 94.1
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 8.4e-79 297.0 152 94.1
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 8.4e-79 297.0 152 94.1
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 8.4e-79 297.0 152 94.1
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.4e-78 296.2 152 93.4
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.9e-78 295.8 152 93.4
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.9e-78 295.8 152 93.4
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 2.4e-78 295.4 153 94.8
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 2.4e-78 295.4 152 93.4
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 3.2e-78 295.0 149 96.6
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 94.1
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 92.8
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 4.2e-78 294.7 148 96.6
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 7.1e-78 293.9 148 95.9
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 7.1e-78 293.9 148 95.9
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 7.1e-78 293.9 152 93.4
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 9.3e-78 293.5 152 92.1
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 9.3e-78 293.5 148 95.9
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 1.2e-77 293.1 148 95.9
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.1
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.1
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.1
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.1
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.1
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 92.1
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 1.2e-77 293.1 147 95.9
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 91.4
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 93.4
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 3.5e-77 291.6 149 93.3
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 90.8
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 91.4
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 3.5e-77 291.6 148 94.6
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 6.0e-77 290.8 148 94.6
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 6.0e-77 290.8 152 91.4
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 6.0e-77 290.8 152 91.4
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.0e-76 290.0 149 91.9
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.0e-76 290.0 149 91.9
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.0e-76 290.0 152 91.4
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.0e-76 290.0 152 91.4
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.0e-76 290.0 149 93.3
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 1.0e-76 290.0 149 93.3
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 92.1
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 92.1
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 1.3e-76 289.7 149 94.0
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.3e-76 289.7 152 91.4
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 1.8e-76 289.3 152 90.8
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 1.8e-76 289.3 152 90.8
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 2.3e-76 288.9 150 93.3
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 90.1
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 89.5
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 3.9e-76 288.1 150 92.0
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 3.9e-76 288.1 152 90.1
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 3.9e-76 288.1 148 93.2
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.9e-76 288.1 152 90.1
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 5.1e-76 287.7 152 91.4
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 5.1e-76 287.7 149 92.6
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 5.1e-76 287.7 151 90.7
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 5.1e-76 287.7 156 89.7
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 5.1e-76 287.7 146 93.8
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 5.1e-76 287.7 146 93.8
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 6.7e-76 287.3 152 92.1
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.7e-76 287.0 152 92.1
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.1e-75 286.6 152 92.1
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 1.1e-75 286.6 146 93.2
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.1e-75 286.6 150 91.3
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.1e-75 286.6 152 90.8
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 1.5e-75 286.2 152 92.1
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 1.9e-75 285.8 152 90.1
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 2.5e-75 285.4 148 92.6
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 2.5e-75 285.4 148 92.6
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 7.4e-75 283.9 144 93.8
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 1.3e-74 283.1 152 90.1
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 2.1e-74 282.3 148 91.9
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 3.7e-74 281.6 148 90.5
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 3.7e-74 281.6 148 90.5
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 4.8e-74 281.2 148 90.5
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 4.8e-74 281.2 151 89.4
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 4.8e-74 281.2 151 89.4
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 8.1e-74 280.4 148 90.5
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.8e-73 279.3 148 91.2
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 1.8e-73 279.3 148 91.2
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.8e-73 279.3 148 91.2
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 1.8e-73 279.3 148 91.2
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 2.4e-73 278.9 148 89.9
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 3.1e-73 278.5 152 88.8
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 3.1e-73 278.5 150 88.0
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 5.3e-73 277.7 148 90.5
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 5.3e-73 277.7 148 90.5
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 5.3e-73 277.7 143 92.3
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 1.2e-72 276.6 152 87.5
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 2.6e-72 275.4 152 88.8
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 5.8e-72 274.2 148 89.2
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 3.8e-71 271.6 140 93.6
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 4.9e-71 271.2 144 89.6
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 6.5e-71 270.8 143 90.2
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 8.4e-71 270.4 156 85.9
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.5e-70 268.9 147 88.4
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 6.0e-69 264.2 143 88.8
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 9.6e-67 256.9 133 94.0
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 9.6e-67 256.9 133 94.0
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 9.6e-67 256.9 146 84.2
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 9.6e-67 256.9 139 89.2
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.1e-65 253.4 132 93.2
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 1.4e-65 253.1 132 90.9
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.4e-65 253.1 134 89.6
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.4e-65 253.1 128 93.8
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 2.4e-65 252.3 131 92.4
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 3.1e-65 251.9 141 86.5
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 4.1e-65 251.5 130 92.3
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 5.3e-65 251.1 132 92.4
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 5.3e-65 251.1 132 89.4
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 6.9e-65 250.8 130 90.8
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 9.0e-65 250.4 131 90.1
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 9.0e-65 250.4 131 90.8
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 2.0e-64 249.2 154 80.5
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.6e-64 248.8 134 87.3
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.4e-64 248.4 147 83.7
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 3.4e-64 248.4 150 81.3
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 3.4e-64 248.4 132 88.6
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.5e-64 248.1 132 90.9
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 4.5e-64 248.1 132 87.9
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 7.6e-64 247.3 152 82.2
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 7.6e-64 247.3 131 88.5
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 7.6e-64 247.3 134 88.8
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 2.2e-63 245.7 132 87.1
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 2.1e-61 239.2 151 75.5
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 2.1e-61 239.2 144 80.6
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 6.1e-61 237.7 143 74.8
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 2.3e-60 235.7 144 74.3
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 8.2e-58 227.3 157 73.2
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 1.0e-52 210.3 184 60.9
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 8.8e-52 207.2 116 86.2
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 9.7e-51 203.8 144 72.2
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 6.3e-50 201.1 126 74.6
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 3.1e-49 198.7 103 94.2
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 1.5e-48 196.4 103 91.3
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 2.9e-47 192.2 103 89.3
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 1.1e-46 190.3 116 75.9
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 9.7e-43 177.2 87 94.3
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 2.4e-41 172.6 115 80.0
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 3.5e-40 168.7 87 88.5
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 7.2e-38 161.0 79 93.7
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 1.4e-36 156.8 81 93.8
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 4.8e-34 148.3 142 58.5
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.3e-33 144.8 73 97.3
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 9.1e-33 144.1 74 89.2
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.2e-28 128.3 71 88.7
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.0e-27 126.3 71 88.7
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 9.8e-27 124.0 71 87.3
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 9.1e-25 117.5 78 73.1
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 7.8e-16 87.8 45 95.6
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 6.6e-15 84.7 46 89.1
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 4.0e-12 75.5 70 57.1


User provided reference genes

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