Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 5.3e-107 391.0 188 100.0
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 1.1e-101 373.2 188 95.2
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 2.5e-101 372.1 188 93.6
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 8.2e-100 367.1 188 92.6
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 8.2e-100 367.1 188 92.6
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 9.1e-99 363.6 188 92.0
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 3.4e-98 361.7 188 91.5
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 4.5e-98 361.3 188 91.0
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 4.5e-98 361.3 188 91.0
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.0e-97 360.1 188 90.4
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 2.9e-97 358.6 188 91.0
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 8.5e-97 357.1 188 91.0
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 5.5e-96 354.4 188 87.8
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 5.5e-96 354.4 188 87.2
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 3.6e-95 351.7 188 86.7
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 6.1e-95 350.9 188 86.2
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 1.4e-94 349.7 188 87.2
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 3.0e-94 348.6 188 86.2
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.9e-94 348.2 188 86.2
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 5.1e-94 347.8 188 86.7
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 6.7e-94 347.4 188 85.6
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 6.7e-94 347.4 188 85.6
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 6.7e-94 347.4 188 85.6
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 8.8e-94 347.1 187 86.6
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.1e-93 346.7 188 86.2
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 2.0e-93 345.9 188 85.1
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 2.6e-93 345.5 188 84.6
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 2.6e-93 345.5 188 84.6
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 2.6e-93 345.5 186 84.4
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 4.4e-93 344.7 188 85.1
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 4.4e-93 344.7 188 85.1
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 4.4e-93 344.7 188 86.2
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 9.7e-93 343.6 188 85.6
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 9.7e-93 343.6 188 85.6
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 9.7e-93 343.6 186 83.3
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 84.6
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 84.6
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 84.6
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 84.6
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 85.1
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 85.1
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 84.0
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 4.8e-92 341.3 186 82.8
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 84.0
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 84.0
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 84.6
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 1.4e-91 339.7 188 84.0
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 84.0
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 84.0
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 84.0
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 83.5
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 83.5
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 3.1e-91 338.6 188 83.5
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 83.5
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 5.3e-91 337.8 186 82.3
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 5.3e-91 337.8 186 82.3
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 83.5
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 83.0
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 83.5
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 81.9
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 83.0
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 83.0
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 4.5e-90 334.7 186 81.7
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 5.9e-90 334.3 190 83.2
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 5.9e-90 334.3 190 83.2
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 83.0
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 81.9
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 81.9
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 82.4
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 80.3
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 8.5e-89 330.5 179 84.9
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 81.9
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 81.9
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 81.4
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 81.9
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 81.9
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.5e-88 328.9 169 91.1
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 81.9
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 4.2e-88 328.2 188 83.0
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 81.4
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 81.4
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 80.3
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 80.3
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 80.3
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 79.8
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 81.4
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.4
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 79.8
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 80.3
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 79.3
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 80.3
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 3.9e-86 321.6 188 80.9
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 81.9
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 1.1e-85 320.1 180 82.2
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 80.9
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 80.9
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 80.9
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 3.3e-85 318.5 188 79.3
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 3.3e-85 318.5 188 80.3
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 5.7e-85 317.8 188 78.2
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 78.2
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 76.6
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 76.6
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 1.1e-83 313.5 188 77.7
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 77.1
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 79.3
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 77.7
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 9.1e-83 310.5 174 83.3
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.2e-82 310.1 188 78.7
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 2.0e-82 309.3 188 76.6
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.0e-82 309.3 188 76.1
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 3.5e-82 308.5 188 75.5
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 4.5e-82 308.1 188 78.7
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.7e-81 306.2 189 77.2
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 76.1
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 8.5e-81 303.9 180 76.1
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 4.2e-80 301.6 188 74.5
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 9.4e-80 300.4 189 76.7
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 9.4e-80 300.4 190 75.3
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 3.6e-79 298.5 189 76.2
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 8.0e-79 297.4 188 76.1
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 1.4e-78 296.6 189 76.7
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.8e-78 296.2 188 76.1
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 2.3e-78 295.8 189 76.2
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 5.2e-78 294.7 188 72.9
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 2.0e-77 292.7 190 73.2
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 4.4e-77 291.6 189 76.2
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.4e-75 286.6 181 78.5
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 3.8e-73 278.5 179 73.2
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 5.0e-73 278.1 188 73.4
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 2.5e-72 275.8 188 67.0
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 5.5e-72 274.6 188 69.1
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 68.6
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 68.6
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 1.2e-71 273.5 188 68.6
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 2.1e-71 272.7 177 74.0
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 4.7e-71 271.6 179 71.5
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 1.0e-70 270.4 187 66.8
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 4.0e-70 268.5 189 66.7
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 8.8e-70 267.3 187 66.8
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 8.8e-70 267.3 188 70.2
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 4.8e-68 261.5 188 69.1
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 5.4e-67 258.1 187 64.2
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 4.7e-63 245.0 188 59.6
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.4e-59 233.4 165 70.3
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.8e-59 233.0 177 62.7
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 7.3e-56 221.1 121 87.6
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.1e-55 219.5 188 60.1
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 1.5e-48 196.8 109 88.1
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 5.6e-48 194.9 187 49.7
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 8.3e-44 181.0 115 74.8
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.9e-43 179.9 173 56.1
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.6e-42 176.8 188 51.6
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 3.9e-41 172.2 123 70.7
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.2e-37 160.6 85 88.2
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 5.8e-37 158.3 127 58.3
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 3.9e-33 145.6 78 87.2
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 1.7e-28 130.2 64 93.8
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 7.8e-26 121.3 92 67.4
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 9.3e-11 71.2 35 94.3
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 5.3e-06 55.5 39 61.5


User provided reference genes

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