Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 1.6e-283 978.8 494 100.0
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 1.2e-145 520.8 257 99.6
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 1.5e-145 520.4 322 84.2
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 1.4e-143 513.8 260 98.1
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 9.5e-140 501.1 257 95.7
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 3.6e-139 499.2 257 95.7
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 6.0e-134 481.9 257 93.4
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 3.0e-133 479.6 257 93.4
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 3.0e-133 479.6 257 93.4
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 3.3e-132 476.1 256 93.4
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 2.4e-130 469.9 260 91.2
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 9.3e-127 458.0 257 89.9
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 1.0e-125 454.5 257 89.1
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.6e-125 451.8 258 88.4
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 1.1e-124 451.1 260 88.8
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 1.4e-122 444.1 255 88.2
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 2.6e-121 439.9 257 86.0
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 1.6e-118 430.6 259 86.1
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 2.7e-118 429.9 259 86.1
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 2.7e-118 429.9 259 86.1
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 2.7e-118 429.9 259 86.1
Ca_30659_v3 Cicer arietinum L. HOM05D003517 ORTHO05D019000 1.0e-117 427.9 221 100.0
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 1.8e-117 427.2 259 85.3
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 1.8e-117 427.2 259 85.3
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 1.8e-117 427.2 258 84.9
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 2.1e-115 420.2 260 84.6
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.1e-114 416.4 254 83.5
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 1.0e-109 401.4 256 80.9
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 2.4e-106 390.2 258 80.2
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 1.0e-104 384.8 268 75.4
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 8.4e-104 381.7 221 88.2
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 4.2e-103 379.4 229 85.6
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 8.7e-101 371.7 209 89.0
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 9.0e-98 361.7 240 79.2
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 9.0e-98 361.7 240 79.2
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 5.0e-96 355.9 240 78.3
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 1.8e-85 320.9 199 84.4
Psat1g142840 Pisum sativum HOM05D003517 ORTHO05D019000 3.0e-85 320.1 221 80.1
Psat4g185600 Pisum sativum HOM05D003517 ORTHO05D019000 3.0e-85 320.1 221 80.1
TPR.G36113 Trifolium pratense HOM05D003517 ORTHO05D009798 1.3e-75 288.1 141 99.3
TPR.G36112 Trifolium pratense HOM05D003517 ORTHO05D019000 1.3e-72 278.1 150 98.0
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 6.3e-67 259.2 259 59.1
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 3.1e-66 256.9 162 81.5
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 9.1e-66 255.4 164 81.1
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 2.0e-65 254.2 150 86.7
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 4.2e-63 246.5 196 69.4
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 3.7e-59 233.4 257 55.6
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.4e-58 231.5 136 83.8
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.4e-58 230.7 136 84.6
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 9.1e-58 228.8 170 72.4
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 1.6e-57 228.0 112 99.1
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 1.0e-56 225.3 133 87.2
Ca_19144_v3 Cicer arietinum L. HOM05D003517 ORTHO05D019000 1.9e-55 221.1 166 74.7
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 6.8e-53 212.6 117 89.7
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 5.7e-52 209.5 247 53.4
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 8.3e-51 205.7 116 87.9
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 2.4e-50 204.1 147 72.1
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 2.4e-50 204.1 147 72.1
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 2.4e-50 204.1 147 72.1
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 2.4e-50 204.1 147 72.1
Ca_26945_v3 Cicer arietinum L. HOM05D003517 ORTHO05D019000 4.1e-50 203.4 170 70.0
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 5.4e-50 203.0 174 63.8
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 3.5e-49 200.3 138 81.2
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 1.3e-48 198.4 114 85.1
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 2.5e-47 194.1 103 92.2
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 3.4e-44 183.7 111 82.0
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 3.4e-44 183.7 111 82.0
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 3.4e-44 183.7 111 82.0
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 3.5e-41 173.7 91 91.2
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 3.9e-40 170.2 91 90.1
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 1.8e-37 161.4 167 55.7
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.8e-37 159.5 135 62.2
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 8.9e-37 159.1 167 54.5
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 3.7e-35 153.7 206 47.1
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.9e-34 151.4 94 78.7
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 9.2e-34 149.1 111 69.4
Psat4g178200 Pisum sativum HOM05D003517 ORTHO05D019000 1.0e-32 145.6 85 87.1
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.1e-30 137.9 93 73.1
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.2e-30 136.3 92 79.3
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.1e-29 134.0 110 66.4
Solyc10g045740.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 4.0e-29 133.7 93 67.7
CARHR287140 Cardamine hirsuta HOM05D003517 ORTHO05D009798 9.9e-28 129.0 80 82.5
Nitab4.5_0001152g0480 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.2e-27 127.9 183 45.9
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 1.5e-23 115.2 94 63.8
Solyc11g030935.1 Solanum lycopersicum HOM05D003517 ORTHO05D009798 3.6e-22 110.5 98 63.3
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 3.6e-22 110.5 74 73.0
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.6e-20 102.8 58 84.5
Lalb_Chr22g0353791 Lupinus albus HOM05D003517 ORTHO05D009798 8.4e-19 99.4 58 84.5
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.9e-18 98.2 65 75.4
Nitab4.5_0008059g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.9e-18 98.2 64 81.2
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 1.9e-18 98.2 57 80.7
PSO339G1469 Papaver somniferum HOM05D003517 ORTHO05D009798 7.8e-17 92.8 95 53.7
PSO513G0171 Papaver somniferum HOM05D003517 ORTHO05D009798 1.7e-16 91.7 122 43.4
Dinv18903 Davidia involucrata HOM05D003517 ORTHO05D009798 2.5e-15 87.8 135 52.6
Medtr5g020310 Medicago truncatula HOM05D003517 ORTHO05D019000 9.6e-15 85.9 45 93.3
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.4e-11 73.2 42 83.3
Lj2g0009144 Lotus japonicus HOM05D000751 ORTHO05D000889 1.1e-10 72.4 37 94.6
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 1.2e-09 68.9 47 72.3
Medtr0030s0090 Medicago truncatula HOM05D003517 ORTHO05D009798 2.1e-09 68.2 36 86.1
Nitab4.5_0006196g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.1e-07 62.4 41 75.6
CSS0018598 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 1.3e-06 58.9 45 62.2


User provided reference genes

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