Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14791_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 2.1e-56 222.6 157 100.0
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 7.8e-11 71.2 37 89.2
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 7.8e-11 71.2 37 89.2
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 7.8e-11 71.2 37 89.2
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Ah.09g233670 Amaranthus hybridus HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
arahy.Tifrunner.gnm1.ann1.DFGQ2J Arachis hypogaea HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
arahy.Tifrunner.gnm1.ann1.NI3B5C Arachis hypogaea HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
EL10Ac5g11421 Beta vulgaris HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
CSS0004352 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
CANSAT35G1697 Cannabis sativa HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Ca_23131_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
ClCG06G014940 Citrullus lanatus HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
COL.COLO4_38438 Corchorus olitorius HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
CsaV3_1G003700 Cucumis sativus L. HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
DCAR_011346 Daucus carota HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Dinv07361 Davidia involucrata HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Duzib168G1916 Durio zibethinus HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
FvH4_3g17390 Fragaria vesca HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
FAN11G2015 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
FAN16G2607 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
FAN21G3174 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
FAN25G2209 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Gohir.A13G215300 Gossypium hirsutum HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Nitab4.5_0000208g0190 Nicotiana tabacum HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Potri.012G061300 Populus trichocarpa HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Sabra15G0075200 Salix brachista HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
SHI30372 Sapria himalayana HOM05D000023 ORTHO05D000014 1.7e-10 70.1 32 100.0
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Thecc.09G221900 Theobroma cacao HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
TAR365G0790 Trochodendron aralioides HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
HPP92_025882 Vanilla planifolia HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
GSVIVG01008255001 Vitis vinifera HOM05D000173 ORTHO05D004400 1.7e-10 70.1 32 100.0
Aa31LG7G3120 Aethionema arabicum HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
AL1G30880 Arabidopsis lyrata HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
AT1G18450 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
AT1G73910 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
MSTRG.4553 Avicennia marina HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
MSTRG.9268 Avicennia marina HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 2.3e-10 69.7 32 96.9
BcaB07g31853 Brassica carinata HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
BcaC05g25737 Brassica carinata HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
BcaNung05445 Brassica carinata HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
A08p30410 Brassica napus HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
C08p18620 Brassica napus HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Carub.0001s1805 Capsella rubella HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Carub.0001s1808 Capsella rubella HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Carub.0002s2068 Capsella rubella HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
CARHR019060 Cardamine hirsuta HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Cc04_g07400 Coffea canephora HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Migut.D01593 Erythranthe guttata HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Thhalv10007641m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Thhalv10018569m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Lsat_1_v5_gn_8_109740 Lactuca sativa HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
PSO017G6263 Papaver somniferum HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
SalBow5G1565 Salvia bowleyana HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Sp1g16390 Schrenkiella parvula HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
TWI15G1235 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 2.3e-10 69.7 32 96.9
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 2.9e-10 69.3 32 96.9
ATR0064G093 Amborella trichopoda HOM05D000173 ORTHO05D004400 2.9e-10 69.3 32 96.9
ATR0737G114 Amborella trichopoda HOM05D000173 ORTHO05D004400 2.9e-10 69.3 32 96.9
AUR62025879 Chenopodium quinoa HOM05D000173 ORTHO05D004400 2.9e-10 69.3 32 96.9
AUR62029850 Chenopodium quinoa HOM05D000173 ORTHO05D004400 2.9e-10 69.3 32 96.9
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 2.9e-10 69.3 32 93.8
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 2.9e-10 69.3 32 96.9
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 2.9e-10 69.3 32 93.8
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 2.9e-10 69.3 32 96.9
SMO347G0056 Selaginella moellendorffii HOM05D000173 ORTHO05D004400 2.9e-10 69.3 37 83.8
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 2.9e-10 69.3 32 96.9
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 2.9e-10 69.3 32 96.9
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 2.9e-10 69.3 32 93.8
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 2.9e-10 69.3 32 96.9
Haze_04561 Corylus avellana HOM05D000173 ORTHO05D004400 3.8e-10 68.9 32 96.9
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 5.0e-10 68.6 32 96.9
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 5.0e-10 68.6 32 96.9
Sp5g29110 Schrenkiella parvula HOM05D000173 ORTHO05D004400 5.0e-10 68.6 32 96.9
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 6.6e-10 68.2 32 93.8
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 6.6e-10 68.2 33 90.9
PSO063G4537 Papaver somniferum HOM05D000173 ORTHO05D004400 6.6e-10 68.2 32 93.8
Aqoxy2G03970 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 8.6e-10 67.8 32 93.8
Aqoxy5G04178 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 8.6e-10 67.8 32 93.8
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 8.6e-10 67.8 32 96.9
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 1.1e-09 67.4 32 90.6
Medtr5g066390 Medicago truncatula HOM05D000027 ORTHO05D000066 1.1e-09 67.4 32 96.9
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 1.1e-09 67.4 32 93.8
Gohir.D13G219000 Gossypium hirsutum HOM05D000173 ORTHO05D004400 1.9e-09 66.6 32 96.9
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 1.9e-09 66.6 32 90.6
AagrBONN_evm.TU.Sc2ySwM_228.3208 Anthoceros agrestis HOM05D000173 ORTHO05D004400 3.3e-09 65.9 32 90.6
CBR_g46675 Chara braunii HOM05D000173 ORTHO05D004400 4.3e-09 65.5 32 90.6
BcaC07g37216 Brassica carinata HOM05D000173 ORTHO05D023886 5.6e-09 65.1 33 90.9
Pp3c15_24010 Physcomitrium patens HOM05D000173 ORTHO05D004400 7.3e-09 64.7 32 87.5
CBR_g46712 Chara braunii HOM05D000173 ORTHO05D004400 2.8e-08 62.8 32 87.5
vmacro22486 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 2.8e-08 62.8 29 100.0
Os08g0137200 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D004400 3.6e-08 62.4 32 84.4
Zm00001eb000800 Zea mays HOM05D000173 ORTHO05D004400 3.6e-08 62.4 32 84.4
Hma1.2p1_0340F.1_g129760 Hydrangea macrophylla HOM05D000173 ORTHO05D004400 6.1e-08 61.6 33 87.9
Pp3c9_24230 Physcomitrium patens HOM05D000173 ORTHO05D004400 1.0e-07 60.8 37 70.3
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 1.0e-07 60.8 28 100.0
VMungo0251G1487 Vigna mungo HOM05D000173 ORTHO05D004400 1.0e-07 60.8 28 100.0
BolC5t30372H Brassica oleracea HOM05D000173 ORTHO05D004400 1.4e-07 60.5 28 96.4
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 1.4e-07 60.5 28 96.4
BraA06t24575Z Brassica rapa HOM05D000173 ORTHO05D004400 1.4e-07 60.5 28 96.4
BraA08t34974Z Brassica rapa HOM05D000173 ORTHO05D004400 1.4e-07 60.5 28 96.4
unitig_736.g22474 Utricularia gibba HOM05D000173 ORTHO05D004400 1.4e-07 60.5 28 96.4
Duzib093G1840 Durio zibethinus HOM05D000173 ORTHO05D004400 3.0e-07 59.3 32 87.5
Medtr8g007445 Medicago truncatula HOM05D000173 ORTHO05D004400 1.5e-06 57.0 32 90.6
Cre06.g249200 Chlamydomonas reinhardtii HOM05D000173 ORTHO05D004400 2.0e-06 56.6 32 71.9


User provided reference genes

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