Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 3628.6 1874 100.0
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 3355.1 1889 91.7
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 3341.6 1892 91.6
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 3340.4 1892 91.0
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 3223.3 1886 88.2
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 3187.5 1888 87.3
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 3146.3 1887 86.2
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 3103.9 1896 85.2
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2912.5 2318 69.0
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2803.5 1890 75.8
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2795.8 1889 76.0
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2788.8 1891 75.3
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2761.1 1889 74.9
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2756.5 1890 75.0
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2734.1 1889 73.5
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2724.5 1890 73.9
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2714.1 1891 73.6
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2709.1 1889 74.0
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2708.3 1892 73.2
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2707.6 1887 73.5
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2705.2 1892 72.8
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2702.2 1890 73.9
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2688.7 1922 72.9
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2687.1 1892 72.7
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2670.6 1881 72.5
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2670.6 1886 72.6
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2663.6 1902 72.3
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2661.7 1918 71.9
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2657.5 1909 73.1
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2634.4 1893 71.5
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2627.8 2020 69.1
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2627.0 1898 71.3
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2610.1 1886 70.9
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2607.4 1954 69.8
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2580.8 1892 71.4
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2568.5 1887 69.1
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2561.2 1893 69.4
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2561.2 1881 69.6
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2560.4 1891 69.8
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2555.4 1891 69.8
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2548.5 1888 69.1
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2546.9 1890 68.7
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2530.7 1717 75.8
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2515.7 1889 68.2
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2514.6 1891 68.5
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2512.6 1888 68.9
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2493.0 1887 68.2
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2491.5 1888 67.2
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2476.4 1894 67.5
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2466.4 1905 67.9
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2466.0 1905 67.9
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2466.0 1958 66.2
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2455.2 1894 67.9
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2453.3 1888 67.1
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2451.4 1890 66.9
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2449.9 1902 67.1
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2449.1 1891 66.6
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2448.3 1891 67.0
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2445.6 1889 67.5
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2442.5 1892 65.9
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2436.4 1892 66.9
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2407.9 1629 75.0
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2399.4 2009 62.7
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2396.7 1953 64.5
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2392.8 1929 65.1
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2390.9 1891 66.1
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2380.1 1895 65.5
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2379.0 1891 65.3
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2376.7 1895 65.5
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2372.0 1896 65.5
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2364.0 1888 65.4
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2357.8 1876 65.4
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2334.3 1586 74.9
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2296.5 1888 64.0
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2294.6 1892 63.2
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2275.0 1927 63.1
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 2192.5 1445 79.4
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2184.8 1473 75.8
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2166.3 1507 74.2
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1941.0 1580 63.4
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1850.5 1427 66.9
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1751.5 1913 49.5
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1740.3 1187 74.2
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1705.6 1910 48.5
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1681.8 1428 62.7
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1632.8 1451 58.6
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1622.8 1909 47.7
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1537.3 1887 49.9
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1537.3 960 83.5
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1529.6 1932 44.6
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1463.4 1198 62.7
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1404.0 840 84.6
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1349.7 1245 56.4
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1297.3 1930 40.7
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1216.4 1125 58.8
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1104.0 1626 44.0
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 4.4e-310 1068.9 1252 48.8
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 9.7e-294 1014.6 1624 41.4
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 2.7e-291 1006.5 780 65.9
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 5.4e-268 929.1 783 60.0
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 7.8e-259 898.7 771 59.9
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 2.5e-249 867.1 697 66.0
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 2.7e-243 847.0 694 64.4
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 4.8e-224 783.1 1050 46.1
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 3.9e-210 736.9 609 64.4
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 2.1e-203 714.5 1047 41.5
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.7e-203 714.1 698 53.9
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 1.0e-202 712.2 518 71.2
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.5e-201 708.4 1051 40.2
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.5e-177 628.6 517 65.0
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.4e-159 568.9 495 63.0
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 3.7e-152 544.3 424 70.5
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 4.3e-140 504.2 266 100.0
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 7.1e-127 460.3 399 59.9
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 3.0e-125 454.9 414 64.0
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 2.5e-116 425.2 340 67.6
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 8.7e-109 400.2 299 69.2
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 2.0e-97 362.5 230 80.4
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 3.4e-97 361.7 353 60.3
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 2.5e-95 355.5 210 83.8
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 9.0e-90 337.0 322 57.5
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 2.6e-89 335.5 329 55.6
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.7e-88 332.8 278 62.6
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 1.0e-85 323.6 335 57.3
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.9e-80 305.4 355 48.7
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 2.2e-75 289.3 307 53.1
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 2.0e-68 266.2 176 76.7
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.5e-60 240.0 182 64.8
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 4.5e-57 228.4 211 61.6
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 5.0e-56 224.9 227 54.6
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 5.0e-56 224.9 227 54.6
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-55 223.8 402 40.8
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 1.5e-52 213.4 386 38.9
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 1.5e-52 213.4 299 45.2
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.5e-52 213.4 179 62.6
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 1.7e-48 199.9 216 52.8
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 2.1e-46 193.0 126 84.9
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 4.7e-46 191.8 159 66.7
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 6.8e-45 188.0 121 84.3
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 7.5e-44 184.5 401 36.4
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 3.3e-39 169.1 151 60.9
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 5.8e-36 158.3 284 39.4
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 2.4e-34 152.9 767 23.3
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.0e-32 147.5 122 55.7
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 6.6e-32 144.8 326 31.6
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 8.6e-32 144.4 975 24.0
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 2.1e-30 139.8 171 51.5
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 8.1e-30 137.9 117 61.5
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 1.4e-29 137.1 75 84.0
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 3.4e-28 132.5 75 86.7
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 9.8e-28 131.0 147 50.3
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 3.2e-26 125.9 97 66.0
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 7.8e-25 121.3 243 36.2
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.1e-23 117.5 78 70.5
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 6.2e-22 111.7 101 58.4
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 8.1e-22 111.3 81 69.1
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.4e-21 110.5 158 38.6
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 6.4e-19 101.7 72 68.1
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 7.1e-18 98.2 56 87.5
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 3.3e-15 89.4 99 44.4
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 9.6e-15 87.8 80 55.0
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 9.6e-15 87.8 99 44.4
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 2.2e-11 76.6 225 27.6
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 4.9e-11 75.5 106 51.9
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 1.4e-10 73.9 37 89.2
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 2.4e-10 73.2 138 42.0
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 3.2e-10 72.8 89 48.3
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 4.2e-10 72.4 44 75.0
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 7.8e-09 68.2 66 56.1
Psat6g208560 Pisum sativum HOM05D003776 ORTHO05D004459 5.1e-08 65.5 59 66.1
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.1e-08 65.5 43 65.1
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 6.6e-08 65.1 34 85.3
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 6.6e-08 65.1 49 63.3
Medtr6g086755 Medicago truncatula HOM05D003776 ORTHO05D004459 1.5e-07 63.9 59 64.4
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.9e-07 63.5 64 46.9
FvH4_1g02070 Fragaria vesca HOM05D000524 ORTHO05D035235 5.6e-07 62.0 47 61.7
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 5.6e-07 62.0 41 70.7
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 9.6e-07 61.2 44 63.6
CAN.G1616.4 Capsicum annuum HOM05D003776 ORTHO05D004459 3.6e-06 59.3 52 61.5


User provided reference genes

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