Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_14199_v3 Cicer arietinum L. HOM05D004014 ORTHO05D149221 9.3e-133 476.9 238 100.0
Ca_23623_v3 Cicer arietinum L. HOM05D004014 ORTHO05D005890 3.7e-41 172.6 120 75.8
Ca_11704_v3 Cicer arietinum L. HOM05D004014 ORTHO05D148986 5.1e-38 162.2 165 55.8
Ca_23300_v3 Cicer arietinum L. HOM05D004014 ORTHO05D005890 2.3e-22 110.2 97 62.9
QL05p015866 Quercus lobata HOM05D004014 ORTHO05D005890 2.3e-22 110.2 106 58.5
Glyma.07G012300 Glycine max HOM05D004014 ORTHO05D005890 3.0e-22 109.8 97 62.9
Phvul.010G141700 Phaseolus vulgaris HOM05D004014 ORTHO05D005890 3.0e-22 109.8 97 62.9
Psat4g193640 Pisum sativum HOM05D004014 ORTHO05D005890 3.0e-22 109.8 97 61.9
TPR.G24219 Trifolium pratense HOM05D004014 ORTHO05D005890 3.0e-22 109.8 97 61.9
VMungo0331G1129 Vigna mungo HOM05D004014 ORTHO05D005890 3.0e-22 109.8 97 62.9
Glyma.08G195900 Glycine max HOM05D004014 ORTHO05D005890 3.9e-22 109.4 97 62.9
Lalb_Chr25g0280531 Lupinus albus HOM05D004014 ORTHO05D005890 3.9e-22 109.4 97 62.9
Medtr8g015660 Medicago truncatula HOM05D004014 ORTHO05D005890 3.9e-22 109.4 97 61.9
Gohir.A09G080500 Gossypium hirsutum HOM05D004014 ORTHO05D005890 6.6e-22 108.6 97 62.9
Gohir.D09G080501 Gossypium hirsutum HOM05D004014 ORTHO05D005890 6.6e-22 108.6 97 62.9
Gorai.006G096100 Gossypium raimondii HOM05D004014 ORTHO05D005890 6.6e-22 108.6 97 62.9
Hund00756 Selenicereus undatus HOM05D004014 ORTHO05D005890 8.7e-22 108.2 97 60.8
Thecc.06G108100 Theobroma cacao HOM05D004014 ORTHO05D005890 8.7e-22 108.2 97 60.8
arahy.Tifrunner.gnm1.ann1.SBEJ10 Arachis hypogaea HOM05D004014 ORTHO05D005890 1.1e-21 107.8 97 60.8
arahy.Tifrunner.gnm1.ann1.ZVXK34 Arachis hypogaea HOM05D004014 ORTHO05D005890 1.1e-21 107.8 97 60.8
CiPaw.01G227100 Carya illinoinensis HOM05D004014 ORTHO05D005890 1.1e-21 107.8 97 61.9
CiPaw.02G141900 Carya illinoinensis HOM05D004014 ORTHO05D005890 1.1e-21 107.8 97 61.9
COL.COLO4_30610 Corchorus olitorius HOM05D004014 ORTHO05D005890 1.5e-21 107.5 97 60.8
Lalb_Chr04g0263081 Lupinus albus HOM05D004014 ORTHO05D005890 1.5e-21 107.5 97 61.9
Lj3g0023335 Lotus japonicus HOM05D004014 ORTHO05D005890 1.9e-21 107.1 97 61.9
Cpa.g.sc131.36 Carica papaya HOM05D004014 ORTHO05D005890 2.5e-21 106.7 97 60.8
Ciclev10025482m.g Citrus clementina HOM05D004014 ORTHO05D005890 4.3e-21 105.9 97 58.8
Duzib160G0604 Durio zibethinus HOM05D004014 ORTHO05D005890 4.3e-21 105.9 97 59.8
Prupe.3G052400 Prunus persica HOM05D004014 ORTHO05D005890 7.3e-21 105.1 97 60.8
RcHm_v2.0_Chr2g0142531 Rosa chinensis HOM05D004014 ORTHO05D005890 1.3e-20 104.4 97 59.8
PGR102G0116 Punica granatum HOM05D004014 ORTHO05D005890 1.6e-20 104.0 97 58.8
CSS0031715 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D005890 2.8e-20 103.2 97 58.8
Sed0015765 Sechium edule HOM05D004014 ORTHO05D005890 2.8e-20 103.2 96 59.4
AUR62041068 Chenopodium quinoa HOM05D004014 ORTHO05D005890 3.6e-20 102.8 97 57.7
AUR62037625 Chenopodium quinoa HOM05D004014 ORTHO05D005890 4.8e-20 102.4 97 57.7
MD17G1176500 Malus domestica HOM05D004014 ORTHO05D005890 4.8e-20 102.4 96 59.4
ClCG09G000550 Citrullus lanatus HOM05D004014 ORTHO05D005890 6.2e-20 102.1 96 59.4
Actinidia09020 Actinidia chinensis HOM05D004014 ORTHO05D005890 8.1e-20 101.7 97 57.7
HanXRQChr05g0140121 Helianthus annuus HOM05D004014 ORTHO05D005890 8.1e-20 101.7 97 56.7
DCAR_007610 Daucus carota HOM05D004014 ORTHO05D005890 1.1e-19 101.3 97 58.8
DCAR_007611 Daucus carota HOM05D004014 ORTHO05D005890 1.1e-19 101.3 97 58.8
Lsat_1_v5_gn_1_36421 Lactuca sativa HOM05D004014 ORTHO05D005890 1.1e-19 101.3 97 56.7
MD09G1195900 Malus domestica HOM05D004014 ORTHO05D005890 1.1e-19 101.3 96 59.4
GSVIVG01016888001 Vitis vinifera HOM05D004014 ORTHO05D005890 1.1e-19 101.3 97 57.7
Actinidia39122 Actinidia chinensis HOM05D004014 ORTHO05D005890 1.4e-19 100.9 97 56.7
CSS0027279 Camellia sinensis var. sinensis HOM05D004014 ORTHO05D005890 1.4e-19 100.9 97 56.7
CsaV3_7G034900 Cucumis sativus L. HOM05D004014 ORTHO05D005890 1.4e-19 100.9 96 59.4
CANSAT56G3696 Cannabis sativa HOM05D004014 ORTHO05D005890 1.8e-19 100.5 96 57.3
Cc04_g02170 Coffea canephora HOM05D004014 ORTHO05D005890 1.8e-19 100.5 97 56.7
MELO3C024402.2 Cucumis melo HOM05D004014 ORTHO05D005890 1.8e-19 100.5 96 59.4
ECA232G4630 Erigeron canadensis HOM05D004014 ORTHO05D005890 1.8e-19 100.5 97 56.7
FAN14G2620 Fragaria x ananassa HOM05D004014 ORTHO05D005890 1.8e-19 100.5 95 58.9
HanXRQChr09g0276341 Helianthus annuus HOM05D004014 ORTHO05D005890 1.8e-19 100.5 97 55.7
THA.LOC104817933 Tarenaya hassleriana HOM05D004014 ORTHO05D005890 2.4e-19 100.1 97 58.8
Dinv30396 Davidia involucrata HOM05D004014 ORTHO05D005890 3.1e-19 99.8 97 55.7
Dinv37931 Davidia involucrata HOM05D004014 ORTHO05D005890 3.1e-19 99.8 97 55.7
Nn8g38926 Nelumbo nucifera HOM05D004014 ORTHO05D005890 3.1e-19 99.8 97 56.7
Sed0015232 Sechium edule HOM05D004014 ORTHO05D005890 3.1e-19 99.8 96 58.3
TWI79G1365 Tripterygium wilfordii HOM05D004014 ORTHO05D005890 3.1e-19 99.8 96 56.2
Atru.chr1.3637 Acer truncatum HOM05D004014 ORTHO05D005890 4.0e-19 99.4 97 56.7
Atru.chr8.1187 Acer truncatum HOM05D004014 ORTHO05D005890 4.0e-19 99.4 97 56.7
FAN02G0480 Fragaria x ananassa HOM05D004014 ORTHO05D005890 4.0e-19 99.4 95 57.9
FAN05G5071 Fragaria x ananassa HOM05D004014 ORTHO05D005890 4.0e-19 99.4 95 57.9
Lsat_1_v5_gn_4_95921 Lactuca sativa HOM05D004014 ORTHO05D005890 4.0e-19 99.4 150 45.3
vmacro16995 Vaccinium macrocarpon HOM05D004014 ORTHO05D005890 4.0e-19 99.4 97 55.7
EL10Ac2g03344 Beta vulgaris HOM05D004014 ORTHO05D005890 5.3e-19 99.0 99 55.6
FvH4_6g32980 Fragaria vesca HOM05D004014 ORTHO05D005890 5.3e-19 99.0 95 57.9
Eucgr.F03104 Eucalyptus grandis HOM05D004014 ORTHO05D005890 6.9e-19 98.6 97 55.7
THA.LOC104805917 Tarenaya hassleriana HOM05D004014 ORTHO05D005890 6.9e-19 98.6 97 57.7
Manes.04G137700 Manihot esculenta HOM05D004014 ORTHO05D005890 9.0e-19 98.2 96 56.2
Sc12g0009850 Simmondsia chinensis HOM05D004014 ORTHO05D005890 9.0e-19 98.2 97 54.6
Gohir.A10G062050 Gossypium hirsutum HOM05D004014 ORTHO05D005890 1.5e-18 97.4 97 54.6
Aa31LG8G7980 Aethionema arabicum HOM05D004014 ORTHO05D005890 2.0e-18 97.1 97 57.7
Carub.0001s4058 Capsella rubella HOM05D004014 ORTHO05D005890 3.4e-18 96.3 97 57.7
BcaC01g01290 Brassica carinata HOM05D004014 ORTHO05D005890 4.5e-18 95.9 97 57.7
A08p02550 Brassica napus HOM05D004014 ORTHO05D005890 4.5e-18 95.9 97 57.7
C03p90260 Brassica napus HOM05D004014 ORTHO05D005890 4.5e-18 95.9 97 57.7
BolC3t21348H Brassica oleracea HOM05D004014 ORTHO05D005890 4.5e-18 95.9 97 57.7
BraA08t32295Z Brassica rapa HOM05D004014 ORTHO05D005890 4.5e-18 95.9 97 57.7
ATR0789G134 Amborella trichopoda HOM05D004014 ORTHO05D005890 5.8e-18 95.5 97 54.6
Haze_15924 Corylus avellana HOM05D004014 ORTHO05D005890 5.8e-18 95.5 113 50.4
Thhalv10011383m.g Eutrema salsugineum HOM05D004014 ORTHO05D005890 5.8e-18 95.5 97 56.7
Sabra03G0029500 Salix brachista HOM05D004014 ORTHO05D005890 5.8e-18 95.5 96 54.2
Lj5A49T39 Lonicera japonica HOM05D004014 ORTHO05D005890 7.6e-18 95.1 97 53.6
Peaxi162Scf00177g00215 Petunia axillaris HOM05D004014 ORTHO05D005890 7.6e-18 95.1 97 54.6
TAR626G0060 Trochodendron aralioides HOM05D004014 ORTHO05D005890 9.9e-18 94.7 97 55.7
AL1G59650 Arabidopsis lyrata HOM05D004014 ORTHO05D005890 1.3e-17 94.4 97 56.7
BcaC08g43331 Brassica carinata HOM05D004014 ORTHO05D005890 1.3e-17 94.4 97 55.7
CARHR041870 Cardamine hirsuta HOM05D004014 ORTHO05D005890 1.3e-17 94.4 97 57.7
CDE07G0617 Ceratophyllum demersum HOM05D004014 ORTHO05D005890 1.3e-17 94.4 96 55.2
CAN.G12.3 Capsicum annuum HOM05D004014 ORTHO05D005890 1.7e-17 94.0 97 53.6
Nitab4.5_0003218g0070 Nicotiana tabacum HOM05D004014 ORTHO05D005890 1.7e-17 94.0 97 54.6
Nitab4.5_0006642g0010 Nicotiana tabacum HOM05D004014 ORTHO05D005890 1.7e-17 94.0 97 54.6
PSO063G2767 Papaver somniferum HOM05D004014 ORTHO05D005890 1.7e-17 94.0 95 54.7
PSO832G1047 Papaver somniferum HOM05D004014 ORTHO05D005890 1.7e-17 94.0 95 54.7
Potri.001G197400 Populus trichocarpa HOM05D004014 ORTHO05D005890 1.7e-17 94.0 96 54.2
Solyc12g044740.2 Solanum lycopersicum HOM05D004014 ORTHO05D005890 1.7e-17 94.0 97 53.6
Sopen12g022890 Solanum pennellii HOM05D004014 ORTHO05D005890 1.7e-17 94.0 97 53.6
FAN09G0688 Fragaria x ananassa HOM05D004014 ORTHO05D005890 2.2e-17 93.6 95 54.7
Sabra01G0156400 Salix brachista HOM05D004014 ORTHO05D005890 2.2e-17 93.6 96 54.2
AT1G51710 Arabidopsis thaliana HOM05D004014 ORTHO05D005890 3.8e-17 92.8 97 55.7
Manes.11G028700 Manihot esculenta HOM05D004014 ORTHO05D005890 3.8e-17 92.8 96 54.2
Potri.003G033700 Populus trichocarpa HOM05D004014 ORTHO05D005890 3.8e-17 92.8 96 53.1
BcaB07g33627 Brassica carinata HOM05D004014 ORTHO05D005890 8.4e-17 91.7 97 54.6
A06p02300 Brassica napus HOM05D004014 ORTHO05D005890 8.4e-17 91.7 97 54.6
BraA06t23436Z Brassica rapa HOM05D004014 ORTHO05D005890 8.4e-17 91.7 97 54.6
C06p06860 Brassica napus HOM05D004014 ORTHO05D005890 3.2e-16 89.7 97 53.6
BolC6t35793H Brassica oleracea HOM05D004014 ORTHO05D005890 3.2e-16 89.7 97 53.6
Rhsim12G0204700 Rhododendron simsii HOM05D004014 ORTHO05D005890 4.2e-16 89.4 169 38.5
Oeu002520.1 Olea europaea HOM05D004014 ORTHO05D005890 9.3e-16 88.2 97 52.6
unitig_37.g12991 Utricularia gibba HOM05D004014 ORTHO05D005890 1.2e-15 87.8 96 53.1
AL3G35320 Arabidopsis lyrata HOM05D004014 ORTHO05D005890 2.1e-15 87.0 96 52.1
Thhalv10020636m.g Eutrema salsugineum HOM05D004014 ORTHO05D005890 2.1e-15 87.0 96 52.1
Oeu039979.1 Olea europaea HOM05D004014 ORTHO05D005890 2.1e-15 87.0 97 52.6
AT3G21280 Arabidopsis thaliana HOM05D004014 ORTHO05D005890 3.5e-15 86.3 96 52.1
Zm00001eb356540 Zea mays HOM05D004014 ORTHO05D005890 6.0e-15 85.5 97 51.5
Zm00001eb162410 Zea mays HOM05D004014 ORTHO05D005890 7.9e-15 85.1 97 51.5
HPP92_005519 Vanilla planifolia HOM05D004014 ORTHO05D005890 1.0e-14 84.7 94 53.2
SGA_v2.0_scaffold71G23744 Striga asiatica HOM05D004014 ORTHO05D005890 1.8e-14 84.0 97 49.5
MSTRG.22603 Avicennia marina HOM05D004014 ORTHO05D005890 2.3e-14 83.6 97 49.5
Migut.I01003 Erythranthe guttata HOM05D004014 ORTHO05D005890 5.1e-14 82.4 97 48.5
Aqoxy7G01294 Aquilegia oxysepala HOM05D004014 ORTHO05D005890 6.7e-14 82.0 95 48.4
Os01g0550100 Oryza sativa ssp. japonica HOM05D004014 ORTHO05D005890 6.7e-14 82.0 97 49.5
SGA_v2.0_scaffold45G16993 Striga asiatica HOM05D004014 ORTHO05D005890 8.7e-14 81.6 123 44.7
SalBow6G0444 Salvia bowleyana HOM05D004014 ORTHO05D005890 1.5e-13 80.9 97 48.5
Ah.10g033570 Amaranthus hybridus HOM05D004014 ORTHO05D005890 4.8e-12 75.9 74 54.1
Pp3c7_7460 Physcomitrium patens HOM05D004014 ORTHO05D005890 4.8e-12 75.9 97 48.5
SMO307G0086 Selaginella moellendorffii HOM05D004014 ORTHO05D005890 6.2e-12 75.5 97 47.4
Sp1g38350 Schrenkiella parvula HOM05D004014 ORTHO05D005890 4.0e-11 72.8 83 53.0
SEGI_22647 Sequoiadendron giganteum HOM05D004014 ORTHO05D005890 4.0e-11 72.8 75 52.0
Mapoly0134s0030 Marchantia polymorpha HOM05D004014 ORTHO05D005890 9.0e-11 71.6 97 46.4
Lsat_1_v5_gn_1_44701 Lactuca sativa HOM05D004014 ORTHO05D005890 3.4e-10 69.7 74 50.0
AagrBONN_evm.TU.Sc2ySwM_117.798 Anthoceros agrestis HOM05D004014 ORTHO05D005890 4.5e-10 69.3 97 43.3
CBR_g3328 Chara braunii HOM05D004014 ORTHO05D005890 4.5e-10 69.3 95 42.1
PSO013G0267 Papaver somniferum HOM05D004014 ORTHO05D303417 1.3e-09 67.8 94 42.6
BcaC09g48419 Brassica carinata HOM05D004014 ORTHO05D005890 2.2e-09 67.0 97 44.3
C01p50000 Brassica napus HOM05D004014 ORTHO05D005890 2.2e-09 67.0 97 44.3
BolC1t04957H Brassica oleracea HOM05D004014 ORTHO05D005890 2.2e-09 67.0 97 44.3
AUR62007854 Chenopodium quinoa HOM05D011798 ORTHO05D014352 2.9e-09 66.6 66 53.0
Sp3g19320 Schrenkiella parvula HOM05D004014 ORTHO05D005890 2.1e-07 60.5 73 46.6
Pp3c11_21370 Physcomitrium patens HOM05D004014 ORTHO05D005890 1.0e-06 58.2 72 44.4
PRCOL_00000017 Prasinoderma coloniale HOM05D004014 ORTHO05D005890 1.0e-06 58.2 96 38.5
Aqoxy3G00091 Aquilegia oxysepala HOM05D004014 ORTHO05D031250 1.8e-06 57.4 126 31.7
PSO832G2035 Papaver somniferum HOM05D004014 ORTHO05D005890 3.0e-06 56.6 83 43.4
Psat4g099720 Pisum sativum HOM05D000292 ORTHO05D000172 3.0e-06 56.6 114 36.8
Psat5g041040 Pisum sativum HOM05D000292 ORTHO05D000172 3.0e-06 56.6 114 36.8
MBI04_g06225_MAGBIO Magnolia biondii HOM05D004014 ORTHO05D005890 8.7e-06 55.1 27 88.9


User provided reference genes

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