Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 7.5e-67 258.1 262 100.0
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 3.0e-60 236.1 262 94.3
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 2.0e-59 233.4 262 90.8
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 2.0e-59 233.4 262 91.6
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 2.8e-58 229.6 262 92.4
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 3.7e-58 229.2 262 90.8
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 1.8e-57 226.9 260 90.8
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 3.1e-57 226.1 262 92.0
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 8.3e-50 201.4 260 88.1
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 1.1e-49 201.1 262 88.5
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 2.9e-47 193.0 262 85.5
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 5.0e-47 192.2 262 86.3
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 8.6e-47 191.4 262 85.5
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 1.1e-46 191.0 262 85.1
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 1.1e-46 191.0 262 84.7
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 1.2e-45 187.6 262 84.7
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 1.6e-45 187.2 262 84.4
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 2.1e-45 186.8 260 85.8
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 3.6e-45 186.0 260 85.0
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 6.1e-45 185.3 262 84.7
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 8.0e-45 184.9 262 84.0
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 8.0e-45 184.9 262 84.0
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 8.0e-45 184.9 261 84.7
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 1.0e-44 184.5 260 85.0
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 1.0e-44 184.5 262 84.4
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 1.8e-44 183.7 261 84.3
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 2.3e-44 183.3 262 84.4
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 2.3e-44 183.3 262 84.4
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 3.1e-44 183.0 262 83.6
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 4.0e-44 182.6 262 84.0
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 8.9e-44 181.4 260 84.2
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 8.9e-44 181.4 262 83.2
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 8.9e-44 181.4 262 83.2
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 1.2e-43 181.0 262 83.2
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.2e-43 181.0 262 83.2
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 2.0e-43 180.3 262 82.8
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 2.0e-43 180.3 260 84.2
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 2.6e-43 179.9 262 83.2
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 7.5e-43 178.3 262 83.2
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 2.2e-42 176.8 262 82.4
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 2.9e-42 176.4 263 82.9
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 6.4e-42 175.3 262 82.1
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 6.4e-42 175.3 262 82.4
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 8.3e-42 174.9 262 82.4
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 8.3e-42 174.9 262 81.7
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 8.3e-42 174.9 261 81.6
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 1.4e-41 174.1 263 82.5
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 1.9e-41 173.7 262 81.3
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 5.4e-41 172.2 262 80.5
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 5.4e-41 172.2 266 42.1
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 1.2e-40 171.0 260 81.5
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 2.0e-40 170.2 262 82.4
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 7.8e-40 168.3 261 79.7
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 7.8e-40 168.3 260 80.8
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.3e-39 167.5 262 80.9
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.7e-39 167.2 262 80.9
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 2.3e-39 166.8 262 80.9
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 6.6e-39 165.2 262 81.7
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 1.5e-38 164.1 262 81.3
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 3.3e-38 162.9 262 80.5
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 3.3e-38 162.9 262 80.5
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 3.3e-38 162.9 262 80.5
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 5.6e-38 162.2 262 80.5
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 5.6e-38 162.2 253 82.2
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 5.6e-38 162.2 269 63.9
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 5.6e-38 162.2 261 80.8
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 7.3e-38 161.8 261 80.8
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 7.3e-38 161.8 262 80.2
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 9.5e-38 161.4 261 79.7
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 9.5e-38 161.4 262 80.2
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 9.5e-38 161.4 299 47.8
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 9.5e-38 161.4 261 81.2
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 1.1e-36 157.9 261 80.1
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 8.9e-36 154.8 261 80.1
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 1.5e-35 154.1 261 78.9
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 1.5e-35 154.1 265 80.0
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 2.0e-35 153.7 261 79.3
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 2.6e-35 153.3 261 79.3
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 4.4e-35 152.5 261 78.5
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 4.4e-35 152.5 261 78.5
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 5.8e-35 152.1 261 78.9
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 5.8e-35 152.1 261 78.9
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 1.3e-34 151.0 261 78.5
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 1.7e-34 150.6 261 78.5
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 3.7e-34 149.4 261 78.2
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 4.9e-34 149.1 261 78.2
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 1.9e-33 147.1 284 60.9
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 3.5e-32 142.9 262 74.8
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.0e-32 142.1 251 80.5
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 6.0e-32 142.1 262 60.3
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 1.7e-31 140.6 250 80.0
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 3.0e-31 139.8 261 76.6
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 3.0e-31 139.8 250 80.0
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 3.9e-31 139.4 287 72.8
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 6.6e-31 138.7 253 80.6
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 8.6e-31 138.3 269 76.6
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 1.6e-29 134.0 234 83.8
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 6.8e-28 128.6 236 81.4
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 7.6e-27 125.2 337 61.1
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 9.9e-27 124.8 231 82.3
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 2.9e-26 123.2 202 94.1
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 3.7e-26 122.9 76 76.3
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 1.9e-25 120.6 78 70.5
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 1.9e-25 120.6 93 64.5
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 5.4e-25 119.0 64 90.6
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 6.0e-24 115.5 63 87.3
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 7.8e-24 115.2 74 73.0
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 7.8e-24 115.2 319 58.0
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 1.0e-23 114.8 62 87.1
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 1.7e-23 114.0 64 84.4
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 2.3e-23 113.6 73 71.2
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 5.1e-23 112.5 63 85.7
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.1e-22 111.3 63 82.5
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 1.1e-22 111.3 260 70.0
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 4.3e-22 109.4 268 70.5
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 5.6e-22 109.0 97 58.8
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 2.8e-21 106.7 262 69.5
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 1.3e-18 97.8 63 71.4
Dinv10691 Davidia involucrata HOM05D000773 ORTHO05D000588 6.4e-18 95.5 207 84.5
Lj5A105G57 Lonicera japonica HOM05D006238 ORTHO05D007458 5.4e-17 92.4 127 44.9
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 5.4e-17 92.4 339 53.4
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 9.3e-17 91.7 90 51.1
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.2e-16 91.3 66 66.7
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 2.1e-16 90.5 74 54.1
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 7.8e-16 88.6 61 62.3
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 3.6e-13 79.7 73 57.5
Hund26924 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.1e-12 78.2 75 57.3
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 2.6e-11 73.6 252 50.8
QL10p018168 Quercus lobata HOM05D006238 ORTHO05D007458 2.6e-11 73.6 58 55.2
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 1.7e-10 70.9 59 47.5
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 8.4e-10 68.6 61 49.2
Cre12.g503600 Chlamydomonas reinhardtii HOM05D006238 ORTHO05D007458 1.4e-09 67.8 261 52.9
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 2.4e-09 67.0 258 50.4
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 9.3e-09 65.1 259 56.8
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 2.1e-08 63.9 73 39.7
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 3.5e-08 63.2 64 46.9
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 6.0e-08 62.4 74 41.9
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 6.0e-08 62.4 74 41.9
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 6.0e-08 62.4 66 43.9
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 6.0e-08 62.4 66 43.9
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 6.0e-08 62.4 71 38.0
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 1.0e-07 61.6 66 43.9
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 1.3e-07 61.2 60 43.3
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 1.3e-07 61.2 66 43.9
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 1.3e-07 61.2 78 39.7
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 1.7e-07 60.8 66 40.9
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 2.3e-07 60.5 252 57.1
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 3.9e-07 59.7 250 48.4
Dinv28676 Davidia involucrata HOM05D006395 ORTHO05D007894 5.1e-07 59.3 73 39.7
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 5.1e-07 59.3 252 56.7
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 8.7e-07 58.5 66 40.9
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 8.7e-07 58.5 66 42.4
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 1.1e-06 58.2 79 34.2
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 1.5e-06 57.8 71 40.8
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 1.5e-06 57.8 66 40.9
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 1.5e-06 57.8 74 37.8
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 1.9e-06 57.4 63 39.7
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 1.9e-06 57.4 72 37.5
Ah.11g047980 Amaranthus hybridus HOM05D006238 ORTHO05D007458 2.5e-06 57.0 70 42.9
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 2.5e-06 57.0 66 42.4
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 2.5e-06 57.0 66 40.9
MCO07G688 Micromonas commoda HOM05D006238 ORTHO05D007458 2.5e-06 57.0 270 33.7
VMungo0540G1476 Vigna mungo HOM05D006395 ORTHO05D007894 2.5e-06 57.0 67 38.8
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 3.3e-06 56.6 64 39.1
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 3.3e-06 56.6 66 40.9
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 3.3e-06 56.6 32 81.2
Actinidia23216 Actinidia chinensis HOM05D006395 ORTHO05D007894 4.3e-06 56.2 73 38.4
Actinidia27062 Actinidia chinensis HOM05D006395 ORTHO05D007894 4.3e-06 56.2 73 38.4
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 4.3e-06 56.2 64 37.5
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 4.3e-06 56.2 79 35.4
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 4.3e-06 56.2 79 35.4
Manes.18G144200 Manihot esculenta HOM05D006395 ORTHO05D007894 4.3e-06 56.2 60 41.7
Nn2g10958 Nelumbo nucifera HOM05D006395 ORTHO05D007894 4.3e-06 56.2 69 40.6
PRCOL_00001761 Prasinoderma coloniale HOM05D006238 ORTHO05D007458 4.3e-06 56.2 83 37.3
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 5.6e-06 55.8 62 43.5
Phvul.006G072100 Phaseolus vulgaris HOM05D006395 ORTHO05D007894 5.6e-06 55.8 67 38.8
Sabra16G0174100 Salix brachista HOM05D006395 ORTHO05D007894 5.6e-06 55.8 64 39.1
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 5.6e-06 55.8 64 39.1
QL01p039673 Quercus lobata HOM05D006395 ORTHO05D007894 7.3e-06 55.5 66 39.4
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 7.3e-06 55.5 73 35.6
Carub.0004s1124 Capsella rubella HOM05D006395 ORTHO05D007894 9.6e-06 55.1 64 39.1
COL.COLO4_11118 Corchorus olitorius HOM05D006395 ORTHO05D007894 9.6e-06 55.1 250 54.0


User provided reference genes

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