Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 0.0e+00 1199.9 612 100.0
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 0.0e+00 1079.7 612 89.1
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 0.0e+00 1076.6 613 89.2
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.8e-305 1052.0 612 87.7
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 4.0e-289 997.7 613 83.4
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 5.1e-284 980.7 623 81.4
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 4.3e-283 977.6 612 81.2
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 3.1e-281 971.5 613 81.1
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 6.4e-279 963.8 613 80.4
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 7.9e-277 956.8 613 81.2
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 5.3e-265 917.5 614 76.7
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.7e-263 912.5 569 82.2
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 2.7e-261 905.2 620 74.2
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.1e-259 899.8 613 75.5
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.3e-258 896.3 615 74.8
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 2.2e-258 895.6 614 73.6
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 2.8e-258 895.2 615 74.3
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 6.9e-257 890.6 617 72.8
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 3.8e-255 884.8 613 72.9
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 5.0e-255 884.4 614 72.6
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.6e-253 879.4 614 73.6
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.1e-253 879.0 613 73.1
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 2.1e-253 879.0 613 73.1
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 2.1e-253 879.0 615 73.3
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 2.7e-253 878.6 613 72.8
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 2.3e-252 875.5 546 82.4
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 3.0e-252 875.2 618 71.5
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 6.7e-252 874.0 614 72.5
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.1e-251 873.2 613 72.8
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 7.4e-251 870.5 615 72.4
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 3.7e-250 868.2 618 71.8
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 3.7e-250 868.2 616 71.8
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 3.4e-248 861.7 618 71.7
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.3e-247 859.8 615 70.9
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 2.1e-245 852.4 612 71.6
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 2.7e-245 852.0 617 70.0
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 4.7e-245 851.3 613 70.0
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 2.6e-243 845.5 615 70.7
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 3.7e-242 841.6 694 64.1
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 4.8e-242 841.3 617 70.0
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 3.1e-241 838.6 630 69.5
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 2.6e-240 835.5 614 69.7
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.0e-239 833.6 617 70.3
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 5.0e-239 831.2 616 69.2
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 6.5e-239 830.9 614 68.2
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 8.5e-239 830.5 614 70.0
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 4.2e-238 828.2 618 68.8
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 1.8e-236 822.8 615 68.8
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 6.7e-236 820.8 611 69.4
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.1e-235 820.1 565 72.7
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.5e-235 819.7 616 68.5
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 2.8e-234 815.5 616 68.2
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 6.3e-234 814.3 616 67.7
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.1e-233 813.5 614 67.8
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 2.4e-233 812.4 614 67.1
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 9.1e-233 810.4 617 66.9
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 9.1e-233 810.4 745 58.5
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.2e-232 810.1 617 68.4
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 2.0e-232 809.3 616 67.2
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 2.0e-232 809.3 617 66.8
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 2.7e-232 808.9 597 69.8
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 3.5e-232 808.5 614 66.6
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.5e-230 803.1 620 67.3
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 4.2e-230 801.6 615 66.0
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 1.2e-229 800.0 616 67.7
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 2.1e-229 799.3 613 67.2
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 1.4e-228 796.6 615 67.6
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 2.3e-228 795.8 615 65.5
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 3.0e-228 795.4 615 65.4
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 4.0e-228 795.0 615 65.4
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 5.2e-228 794.7 613 65.6
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 8.8e-228 793.9 574 72.0
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.2e-227 793.5 616 65.7
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 1.5e-227 793.1 615 65.2
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 2.6e-227 792.3 615 65.2
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 3.4e-227 792.0 615 65.2
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 9.8e-227 790.4 616 65.7
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.8e-225 786.2 616 65.1
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 3.1e-225 785.4 611 66.3
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 9.1e-225 783.9 598 68.7
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 2.9e-223 778.9 547 72.2
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 7.2e-222 774.2 613 65.6
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 4.4e-219 765.0 569 70.5
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 8.3e-218 760.8 616 63.0
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.4e-217 759.2 616 62.8
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 5.4e-209 731.5 617 62.6
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 1.3e-199 700.3 502 72.9
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.6e-197 693.3 617 60.5
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 7.3e-190 667.9 620 58.2
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 2.1e-189 666.4 628 55.9
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.5e-182 643.7 614 57.7
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 4.9e-170 602.1 677 48.2
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.4e-169 599.7 688 52.3
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 2.6e-163 579.7 615 51.9
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.4e-156 557.4 502 61.4
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 2.5e-150 536.6 378 72.8
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 3.3e-150 536.2 353 75.9
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 2.9e-146 523.1 502 56.0
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 2.5e-145 520.0 386 69.4
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 7.7e-139 498.4 257 99.6
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 2.5e-129 466.8 363 66.9
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 8.8e-127 458.4 359 66.9
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 1.4e-116 424.5 257 82.9
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 2.4e-116 423.7 387 61.0
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 4.1e-116 422.9 436 54.1
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.5e-105 387.1 256 74.6
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 4.0e-103 379.8 660 36.8
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 1.6e-99 367.9 323 61.0
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.9e-97 360.9 244 73.8
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.5e-94 351.3 231 76.2
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 5.6e-81 306.2 179 80.4
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 3.1e-79 300.4 629 34.3
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 6.9e-63 246.1 223 60.1
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 7.8e-59 232.6 160 74.4
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-58 232.3 235 57.0
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 1.3e-48 198.7 158 63.3
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.6e-46 189.5 111 82.0
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 7.1e-44 183.0 111 80.2
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 3.5e-43 180.6 110 79.1
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 3.9e-42 177.2 111 77.5
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 5.1e-42 176.8 109 78.0
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 5.6e-41 173.3 109 76.1
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 6.0e-35 153.3 104 68.3
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 6.7e-34 149.8 125 64.0
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-33 147.5 99 73.7
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 6.3e-32 143.3 135 57.8
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.2e-29 134.8 82 76.8
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 4.2e-28 130.6 529 25.7
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 9.4e-28 129.4 83 74.7
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-27 127.9 123 59.3
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.4e-26 125.6 134 52.2
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 3.7e-24 117.5 69 84.1
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 6.9e-23 113.2 97 56.7
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 6.9e-23 113.2 97 56.7
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 6.9e-23 113.2 71 74.6
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 3.8e-21 107.5 83 61.4
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 3.6e-19 100.9 66 72.7
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 2.6e-17 94.7 55 72.7
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 2.4e-15 88.2 55 78.2
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.4e-12 79.0 150 41.3
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 1.6e-11 75.5 182 31.3
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 2.1e-11 75.1 182 30.2
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-11 74.7 41 80.5
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 3.6e-11 74.3 182 29.7
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 6.1e-11 73.6 182 30.8
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 6.1e-11 73.6 182 30.8
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 6.1e-11 73.6 50 72.0
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 8.0e-11 73.2 182 29.7
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 8.0e-11 73.2 174 29.3
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 8.0e-11 73.2 182 30.8
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 1.0e-10 72.8 184 29.9
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 1.8e-10 72.0 182 29.1
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 2.3e-10 71.6 182 29.7
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 2.3e-10 71.6 182 29.7
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 3.0e-10 71.2 182 29.7
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 3.9e-10 70.9 41 82.9
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 3.9e-10 70.9 182 30.2
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 3.9e-10 70.9 182 29.1
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 6.7e-10 70.1 40 77.5
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 8.8e-10 69.7 174 29.3
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 2.6e-09 68.2 182 28.0
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 3.3e-09 67.8 183 26.8
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 5.7e-09 67.0 181 27.6
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.7e-08 65.5 181 27.6
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 2.2e-08 65.1 45 73.3
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 3.7e-08 64.3 193 28.5
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 3.7e-08 64.3 41 68.3
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 4.8e-08 63.9 203 27.6
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.4e-07 62.4 45 66.7
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 5.3e-07 60.5 151 27.8
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-06 58.9 46 63.0


User provided reference genes

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