Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 2.0e-25 118.2 58 100.0
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 1.0e-24 115.9 58 98.3
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.0e-24 115.9 58 98.3
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.0e-24 115.9 58 98.3
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 2.3e-24 114.8 58 96.6
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 2.3e-24 114.8 58 96.6
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 2.3e-24 114.8 58 96.6
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 2.3e-24 114.8 58 96.6
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 8.6e-24 112.8 56 96.4
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 1.5e-23 112.1 58 94.8
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 1.9e-23 111.7 57 94.7
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 4.3e-23 110.5 58 93.1
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 7.3e-23 109.8 57 93.0
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 8.0e-22 106.3 58 87.9
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 8.0e-22 106.3 58 87.9
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 8.0e-22 106.3 58 87.9
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 8.0e-22 106.3 58 87.9
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 1.4e-21 105.5 58 87.9
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 6.8e-21 103.2 58 84.5
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 8.9e-21 102.8 58 84.5
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 1.5e-20 102.1 58 84.5
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 1.5e-20 102.1 58 82.8
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.5e-20 102.1 58 82.8
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.5e-20 102.1 58 82.8
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.5e-20 102.1 58 82.8
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.5e-20 102.1 58 82.8
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 2.6e-20 101.3 58 82.8
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 4.4e-20 100.5 58 81.0
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 1.7e-19 98.6 58 79.3
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 4.9e-19 97.1 58 79.3
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 6.4e-19 96.7 59 81.4
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.1e-18 95.9 53 86.8
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 1.4e-18 95.5 59 81.4
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 1.4e-18 95.5 59 81.4
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 1.4e-18 95.5 59 81.4
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 3.2e-18 94.4 59 81.4
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 3.2e-18 94.4 59 81.4
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 3.2e-18 94.4 59 81.4
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 5.4e-18 93.6 59 79.7
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 5.4e-18 93.6 59 79.7
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 5.4e-18 93.6 60 80.0
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 7.0e-18 93.2 59 79.7
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 7.0e-18 93.2 59 79.7
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 7.0e-18 93.2 59 79.7
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 7.0e-18 93.2 59 79.7
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 7.0e-18 93.2 59 79.7
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 7.0e-18 93.2 59 79.7
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 7.0e-18 93.2 59 79.7
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 7.0e-18 93.2 59 79.7
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 7.0e-18 93.2 59 79.7
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 9.2e-18 92.8 59 78.0
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 9.2e-18 92.8 59 78.0
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 1.6e-17 92.0 60 80.0
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 1.6e-17 92.0 59 78.0
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 2.0e-17 91.7 56 80.4
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 2.0e-17 91.7 56 80.4
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 2.7e-17 91.3 56 80.4
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 3.5e-17 90.9 56 82.1
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 3.5e-17 90.9 59 76.3
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 7.8e-17 89.7 60 76.7
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 7.8e-17 89.7 60 76.7
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 2.3e-16 88.2 58 74.1
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 3.0e-16 87.8 56 76.8
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 3.0e-16 87.8 60 75.0
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 3.9e-16 87.4 59 74.6
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 6.6e-16 86.7 60 75.0
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 6.6e-16 86.7 56 76.8
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 6.6e-16 86.7 56 76.8
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 8.6e-16 86.3 61 73.8
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 1.1e-15 85.9 58 72.4
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.5e-15 85.5 61 72.1
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.5e-15 85.5 61 72.1
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.5e-15 85.5 61 72.1
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 1.5e-15 85.5 61 72.1
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 5.6e-15 83.6 61 70.5
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 5.6e-15 83.6 61 70.5
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 9.5e-15 82.8 61 70.5
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 9.5e-15 82.8 61 70.5
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 9.5e-15 82.8 61 70.5
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 1.2e-14 82.4 56 73.2
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 1.2e-14 82.4 61 70.5
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 2.8e-14 81.3 61 68.9
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 3.6e-14 80.9 54 74.1
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 3.6e-14 80.9 50 82.0
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 3.6e-14 80.9 61 68.9
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 3.6e-14 80.9 61 68.9
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 3.6e-14 80.9 61 68.9
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 3.6e-14 80.9 61 68.9
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 3.6e-14 80.9 61 68.9
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 4.7e-14 80.5 58 69.0
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 4.7e-14 80.5 58 67.2
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 6.2e-14 80.1 46 78.3
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 8.1e-14 79.7 58 69.0
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 1.2e-12 75.9 56 69.6
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 2.0e-12 75.1 55 70.9
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 3.4e-12 74.3 57 63.2
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 5.8e-12 73.6 48 70.8
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 5.8e-12 73.6 50 64.0
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 1.3e-11 72.4 51 70.6
Medtr1g011670 Medicago truncatula HOM05D005020 ORTHO05D006017 1.1e-10 69.3 37 89.2
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 1.4e-10 68.9 53 64.2
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 1.2e-09 65.9 59 61.0
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 1.6e-09 65.5 59 55.9
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 2.7e-09 64.7 55 61.8
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 2.7e-09 64.7 55 56.4
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 4.6e-09 63.9 44 65.9
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 6.0e-09 63.5 47 68.1
THA.LOC104802731 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 1.0e-08 62.8 57 63.2
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 5.1e-08 60.5 51 56.9
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 5.1e-08 60.5 50 56.0
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 6.6e-08 60.1 54 53.7
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.1e-07 59.3 54 53.7
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.1e-07 59.3 44 61.4
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 1.1e-07 59.3 44 61.4
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.1e-07 59.3 55 52.7
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 1.9e-07 58.5 49 59.2
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 2.5e-07 58.2 44 59.1
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 4.3e-07 57.4 50 52.0
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 4.3e-07 57.4 52 53.8
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 7.3e-07 56.6 48 54.2
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 1.6e-06 55.5 52 51.9
Duzib170G0405 Durio zibethinus HOM05D005020 ORTHO05D006017 2.1e-06 55.1 44 56.8
SMO196G0139 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 2.1e-06 55.1 54 50.0
Ca_29279_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 3.6e-06 54.3 48 58.3


User provided reference genes

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