Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 1.2e-241 839.3 412 100.0
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 1.2e-241 839.3 412 100.0
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 1.7e-206 722.6 413 85.2
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 5.3e-184 647.9 412 75.7
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 1.1e-181 640.2 342 90.6
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 1.2e-180 636.7 417 77.2
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 1.2e-180 636.7 412 75.0
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 2.3e-179 632.5 416 74.8
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 6.7e-179 630.9 412 74.3
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 2.8e-177 625.5 412 74.0
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 1.9e-170 602.8 408 72.1
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 9.6e-170 600.5 408 72.1
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 8.5e-158 560.8 415 67.5
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 4.2e-157 558.5 408 66.7
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 1.1e-154 550.4 408 65.9
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 2.0e-154 549.7 418 67.0
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 2.5e-154 549.3 409 65.0
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 7.4e-154 547.7 386 67.9
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 2.2e-153 546.2 409 65.5
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 4.5e-151 538.5 430 63.5
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 1.0e-150 537.3 407 64.9
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 2.9e-150 535.8 391 67.5
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 5.0e-150 535.0 409 64.8
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 5.0e-150 535.0 408 65.9
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 3.2e-149 532.3 411 64.0
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 1.6e-148 530.0 409 65.5
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.7e-148 529.3 393 68.7
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 1.0e-147 527.3 409 64.5
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 3.9e-147 525.4 383 67.6
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 5.1e-147 525.0 415 63.4
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 2.6e-146 522.7 409 64.1
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 2.6e-146 522.7 413 64.4
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 3.3e-146 522.3 407 63.4
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 7.4e-146 521.2 405 64.2
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 9.7e-146 520.8 404 63.9
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 9.7e-146 520.8 432 62.0
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 9.7e-146 520.8 413 62.5
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.7e-145 520.0 414 63.5
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.7e-145 520.0 409 64.5
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 2.2e-145 519.6 408 64.2
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 1.1e-144 517.3 414 63.0
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 2.4e-144 516.2 407 62.4
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 3.1e-144 515.8 390 63.3
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 3.1e-144 515.8 415 63.1
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 5.3e-144 515.0 408 63.7
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 7.0e-144 514.6 407 62.4
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 1.2e-143 513.8 408 63.7
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.5e-143 513.5 432 61.1
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 2.0e-143 513.1 379 67.3
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 2.6e-143 512.7 416 61.8
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 4.5e-143 511.9 407 63.1
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 4.5e-143 511.9 405 62.7
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 7.7e-143 511.1 388 64.4
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 1.3e-142 510.4 446 58.5
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 1.3e-142 510.4 405 63.2
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 1.3e-142 510.4 407 61.7
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 1.3e-142 510.4 412 61.2
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 2.2e-142 509.6 415 61.7
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 6.5e-142 508.1 405 62.5
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 8.5e-142 507.7 411 62.0
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 1.5e-141 506.9 403 62.0
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 1.5e-141 506.9 405 62.7
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.9e-141 506.5 403 61.5
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 2.5e-141 506.1 404 62.6
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 2.5e-141 506.1 363 67.8
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 5.5e-141 505.0 405 62.5
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 7.2e-141 504.6 409 61.1
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 9.4e-141 504.2 405 62.0
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 9.4e-141 504.2 405 62.0
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 1.2e-140 503.8 404 61.6
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 1.2e-140 503.8 404 61.6
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 1.6e-140 503.4 405 62.2
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 2.1e-140 503.1 404 61.4
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 2.1e-140 503.1 405 62.0
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 3.6e-140 502.3 404 61.6
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 3.6e-140 502.3 409 61.9
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 3.6e-140 502.3 404 61.1
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 6.1e-140 501.5 406 60.6
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 1.8e-139 500.0 404 61.4
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 6.7e-139 498.0 341 69.5
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 6.7e-139 498.0 404 60.9
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 1.1e-138 497.3 408 61.8
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 2.0e-138 496.5 404 60.6
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 4.4e-138 495.4 404 59.9
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 1.7e-137 493.4 405 60.2
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 2.2e-137 493.0 344 70.6
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 3.7e-137 492.3 408 60.8
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 6.3e-137 491.5 447 56.8
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 3.1e-136 489.2 405 60.0
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 3.1e-136 489.2 406 59.6
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 5.3e-136 488.4 405 59.8
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 9.1e-136 487.6 432 57.4
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 9.1e-136 487.6 406 60.3
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 1.6e-135 486.9 408 59.3
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 2.6e-135 486.1 406 59.9
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 7.7e-135 484.6 408 58.8
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 1.7e-134 483.4 345 68.7
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 1.5e-133 480.3 473 54.3
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 3.2e-133 479.2 338 68.6
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 2.1e-132 476.5 378 61.9
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 2.1e-132 476.5 380 61.1
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 2.1e-132 476.5 405 59.0
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 2.7e-132 476.1 415 58.3
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 6.1e-132 474.9 395 59.2
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 8.0e-132 474.6 402 59.0
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.4e-131 473.8 355 65.1
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 3.0e-131 472.6 353 64.0
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 1.3e-129 467.2 348 66.1
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 1.3e-129 467.2 352 65.1
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 1.7e-129 466.8 347 64.8
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 3.1e-128 462.6 342 65.5
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 4.1e-128 462.2 414 57.2
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 7.0e-128 461.5 378 57.7
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 9.1e-128 461.1 342 65.5
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.2e-127 460.7 423 56.5
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 1.9e-125 453.4 417 56.6
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 4.2e-125 452.2 410 57.6
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 1.6e-124 450.3 408 56.4
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 8.8e-123 444.5 380 59.5
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.2e-122 444.1 342 63.2
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 9.8e-122 441.0 402 58.2
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 1.8e-120 436.8 382 56.3
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 2.3e-118 429.9 318 67.3
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 2.6e-114 416.4 394 56.3
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 2.7e-111 406.4 339 58.1
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 1.2e-106 391.0 289 66.1
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 1.5e-101 374.0 383 49.1
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 4.3e-93 345.9 301 53.8
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 1.2e-92 344.4 303 53.5
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 4.3e-85 319.3 344 48.8
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 1.6e-84 317.4 322 49.7
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 9.9e-82 308.1 313 53.7
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 6.0e-79 298.9 270 53.3
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 8.7e-78 295.0 195 70.3
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 2.1e-76 290.4 220 63.6
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 6.6e-70 268.9 287 50.2
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 7.6e-66 255.4 250 54.4
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 3.5e-63 246.5 329 42.9
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.3e-46 191.4 181 52.5
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 6.3e-44 182.6 160 55.6
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 6.9e-43 179.1 190 52.6
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 5.9e-42 176.0 283 37.1
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 2.2e-33 147.5 315 32.1
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 1.6e-31 141.4 116 61.2
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 1.0e-30 138.7 308 31.8
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 1.4e-27 128.3 113 55.8
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 7.2e-24 115.9 120 53.3
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 7.2e-24 115.9 61 90.2
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 2.1e-23 114.4 85 64.7
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 4.7e-23 113.2 59 86.4
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.4e-22 111.7 73 65.8
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 3.8e-17 93.6 60 73.3
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.9e-16 91.3 64 62.5
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 8.0e-15 85.9 113 40.7
Medtr5g070470 Medicago truncatula HOM05D000009 ORTHO05D000008 4.0e-14 83.6 114 45.6
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 4.4e-13 80.1 107 46.7
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 4.8e-12 76.6 68 54.4
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 1.4e-11 75.1 68 52.9
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 5.4e-11 73.2 50 64.0
Cpa.g.sc6.184 Carica papaya HOM05D000363 ORTHO05D000236 2.5e-08 64.3 135 31.1
FvH4_1g12460 Fragaria vesca HOM05D000363 ORTHO05D000236 1.6e-07 61.6 124 35.5
FAN19G0327 Fragaria x ananassa HOM05D000363 ORTHO05D000236 1.6e-07 61.6 124 35.5
Medtr5g071570 Medicago truncatula HOM05D000009 ORTHO05D000008 2.1e-07 61.2 107 41.1
MD15G1252000 Malus domestica HOM05D000363 ORTHO05D000236 2.7e-07 60.8 135 30.4
AagrBONN_evm.TU.Sc2ySwM_362.2316 Anthoceros agrestis HOM05D000363 ORTHO05D000236 3.6e-07 60.5 147 31.3
AagrBONN_evm.TU.Sc2ySwM_362.2317 Anthoceros agrestis HOM05D000363 ORTHO05D000236 4.7e-07 60.1 147 31.3
FAN23G1427 Fragaria x ananassa HOM05D000363 ORTHO05D000236 8.0e-07 59.3 124 34.7
MD02G1138500 Malus domestica HOM05D000363 ORTHO05D000236 8.0e-07 59.3 135 30.4
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 1.0e-06 58.9 120 35.8
Potri.014G127200 Populus trichocarpa HOM05D000363 ORTHO05D000236 1.0e-06 58.9 329 22.5
Prupe.7G162400 Prunus persica HOM05D000363 ORTHO05D000236 1.0e-06 58.9 135 30.4
RcHm_v2.0_Chr2g0100321 Rosa chinensis HOM05D000363 ORTHO05D000236 1.4e-06 58.5 124 34.7
CDE08G0389 Ceratophyllum demersum HOM05D000363 ORTHO05D000236 1.8e-06 58.2 78 39.7
Zm00001eb032970 Zea mays HOM05D000363 ORTHO05D000236 1.8e-06 58.2 86 39.5
Medtr5g072260 Medicago truncatula HOM05D036032 ORTHO05D260814 3.0e-06 57.4 93 43.0
PSO170G0253 Papaver somniferum HOM05D000363 ORTHO05D000236 4.0e-06 57.0 327 21.4
Mapoly0001s0421 Marchantia polymorpha HOM05D000363 ORTHO05D000236 6.8e-06 56.2 328 22.9
Prupe.7G162300 Prunus persica HOM05D000363 ORTHO05D000236 6.8e-06 56.2 76 36.8
SMO201G0237 Selaginella moellendorffii HOM05D000363 ORTHO05D000236 6.8e-06 56.2 270 21.9
QL11p045365 Quercus lobata HOM05D000363 ORTHO05D000236 8.8e-06 55.8 124 34.7


User provided reference genes

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