Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.1e-306 1054.3 527 100.0
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 8.5e-288 993.0 530 94.0
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 8.9e-269 929.9 526 89.4
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 5.2e-261 904.0 530 87.0
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 3.4e-252 874.8 527 84.8
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 8.3e-251 870.2 527 83.9
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 2.4e-250 868.6 523 84.9
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 4.6e-249 864.4 598 76.3
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 1.3e-235 819.7 528 79.5
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 1.7e-235 819.3 528 81.1
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 7.1e-234 813.9 529 79.8
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 7.1e-234 813.9 529 79.8
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 2.0e-228 795.8 528 77.7
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 5.8e-228 794.3 516 79.1
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 6.4e-227 790.8 523 76.5
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 6.4e-227 790.8 480 82.9
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 1.9e-226 789.3 510 78.6
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 7.1e-226 787.3 462 84.8
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 9.3e-226 786.9 508 79.1
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 4.6e-225 784.6 527 76.5
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 3.0e-224 781.9 528 77.1
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 1.3e-222 776.5 528 76.1
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 3.7e-222 775.0 516 76.6
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.4e-221 772.3 525 75.4
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 3.1e-221 771.9 492 79.7
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 1.5e-220 769.6 530 76.2
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 2.0e-220 769.2 522 77.0
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 2.2e-219 765.8 517 76.4
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 2.9e-219 765.4 534 74.0
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.4e-218 763.1 494 78.5
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 2.5e-218 762.3 455 83.3
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 2.5e-218 762.3 531 74.8
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 3.2e-218 761.9 452 83.6
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 9.3e-218 760.4 516 75.4
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.6e-217 759.6 522 73.8
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 2.1e-217 759.2 525 74.5
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 1.0e-216 756.9 481 78.4
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.3e-216 756.5 538 73.0
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.8e-216 756.1 474 81.9
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.8e-216 756.1 532 72.2
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 1.8e-216 756.1 538 72.1
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.0e-216 755.4 528 73.7
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 5.1e-216 754.6 504 75.0
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 8.7e-216 753.8 479 78.3
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 1.5e-215 753.1 462 80.3
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.5e-215 753.1 521 73.9
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.9e-215 752.7 438 84.0
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 3.3e-215 751.9 474 81.2
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.3e-215 751.9 503 75.0
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 7.4e-215 750.7 486 77.2
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 3.7e-214 748.4 464 80.4
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 6.2e-214 747.7 527 72.9
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.4e-213 746.5 491 76.8
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.8e-213 746.1 476 78.2
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 5.3e-213 744.6 501 75.2
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 6.9e-213 744.2 463 80.1
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.3e-211 740.0 540 72.6
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.7e-211 739.6 521 72.9
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 2.2e-211 739.2 519 73.0
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 4.9e-211 738.0 522 72.8
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 6.5e-211 737.6 491 76.0
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.4e-210 736.5 440 82.5
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 5.5e-210 734.6 464 79.1
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 9.3e-210 733.8 509 74.3
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 9.3e-210 733.8 464 78.9
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.3e-208 729.2 484 76.4
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 2.5e-207 725.7 528 70.5
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 3.3e-207 725.3 528 71.2
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 5.7e-207 724.5 526 70.5
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 5.7e-207 724.5 436 80.7
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 2.2e-206 722.6 524 70.2
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.2e-206 722.6 458 79.0
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 4.8e-206 721.5 419 84.2
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 8.2e-206 720.7 527 70.8
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.1e-205 720.3 419 84.2
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 2.4e-205 719.2 510 72.5
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 6.9e-205 717.6 436 80.0
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 9.0e-205 717.2 555 67.6
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 9.0e-205 717.2 523 70.0
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 9.0e-205 717.2 525 71.0
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 9.0e-205 717.2 436 79.4
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 9.0e-205 717.2 453 78.4
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 4.5e-204 714.9 483 73.9
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 2.9e-203 712.2 471 76.0
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 2.9e-203 712.2 442 80.1
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.9e-202 709.5 476 75.6
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 2.5e-202 709.1 529 69.6
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 3.2e-202 708.8 446 77.8
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 4.2e-202 708.4 457 76.6
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 3.6e-201 705.3 440 77.7
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 1.8e-200 703.0 435 78.6
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 2.3e-200 702.6 527 69.1
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 2.3e-200 702.6 459 75.8
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 1.1e-199 700.3 528 68.9
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 2.5e-199 699.1 531 69.1
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 7.4e-199 697.6 435 77.0
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 9.7e-199 697.2 531 69.3
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.7e-198 696.4 421 80.5
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 8.2e-198 694.1 484 73.6
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 8.2e-198 694.1 475 73.1
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.8e-197 693.0 464 72.8
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 2.4e-197 692.6 426 80.8
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 6.9e-197 691.0 421 80.5
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 3.4e-196 688.7 530 68.7
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 7.7e-196 687.6 439 76.3
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 2.9e-195 685.6 521 68.5
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 6.5e-195 684.5 491 72.1
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 1.4e-194 683.3 552 65.4
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 2.5e-194 682.6 497 71.8
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.4e-192 676.8 478 72.2
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 5.9e-188 661.4 485 68.5
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.0e-187 660.6 433 75.8
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.7e-185 652.5 399 81.2
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 4.1e-181 638.6 442 70.6
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 2.0e-180 636.3 426 71.4
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 7.2e-178 627.9 456 68.4
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 7.0e-173 611.3 435 68.0
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 7.7e-172 607.8 432 69.0
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.7e-166 589.0 362 79.3
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 4.5e-156 555.4 329 83.0
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 5.2e-152 542.0 324 84.3
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 1.1e-144 517.7 403 68.0
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 8.9e-144 514.6 327 78.6
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 3.4e-143 512.7 432 60.4
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.4e-143 512.7 302 83.8
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.2e-140 504.2 432 60.0
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 8.6e-139 498.0 435 58.2
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 7.3e-138 495.0 385 67.8
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.6e-137 492.7 299 82.9
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.4e-126 455.3 299 77.3
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 7.3e-122 441.8 350 68.0
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 9.0e-120 434.9 272 77.9
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 5.8e-119 432.2 424 56.1
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.8e-110 402.9 432 47.5
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 3.7e-105 386.3 242 82.2
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 4.5e-95 352.8 431 44.3
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 7.7e-79 298.9 172 83.1
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 5.5e-77 292.7 364 44.5
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.0e-55 221.1 130 80.0
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 8.5e-54 215.7 249 55.0
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.5e-53 213.0 178 65.2
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 7.7e-47 192.6 186 52.2
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 9.5e-45 185.7 137 67.9
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 1.0e-43 182.2 119 69.7
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 9.8e-42 175.6 129 68.2
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 5.0e-38 163.3 90 87.8
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 6.2e-36 156.4 89 80.9
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 1.5e-29 135.2 108 62.0
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 4.3e-29 133.7 137 52.6
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 2.9e-25 120.9 130 50.8
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 4.9e-25 120.2 81 71.6
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 6.4e-25 119.8 197 41.6
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 1.1e-24 119.0 80 71.2
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 4.1e-24 117.1 78 69.2
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 1.6e-23 115.2 127 49.6
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 8.6e-22 109.4 155 42.6
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 4.3e-21 107.1 292 31.2
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 3.6e-20 104.0 123 48.0
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 3.6e-20 104.0 123 48.0
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 3.6e-20 104.0 254 31.9
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 7.1e-16 89.7 53 84.9


User provided reference genes

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