Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 1.9e-243 845.9 607 100.0
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 2.9e-178 629.4 416 78.6
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 1.1e-177 627.5 418 79.7
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 3.1e-172 609.4 420 76.0
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 9.9e-155 551.2 417 69.3
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 8.4e-154 548.1 418 67.0
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 2.4e-148 530.0 410 65.9
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 9.6e-134 481.5 411 64.2
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 2.9e-130 469.9 589 66.6
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 8.2e-109 398.7 421 50.6
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 1.4e-108 397.9 414 53.9
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 2.2e-106 390.6 412 51.9
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 7.2e-105 385.6 422 49.3
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 1.2e-104 384.8 406 53.7
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.2e-104 384.8 417 51.1
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 1.8e-103 380.9 439 46.7
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 8.8e-103 378.6 417 50.6
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 4.4e-102 376.3 386 50.8
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 6.3e-101 372.5 429 48.5
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 8.2e-101 372.1 441 47.2
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 1.8e-100 370.9 326 62.3
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 2.4e-100 370.5 438 46.8
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 4.1e-100 369.8 414 50.2
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 4.5e-99 366.3 428 48.6
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 2.2e-98 364.0 426 46.9
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 2.2e-98 364.0 426 46.7
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 2.9e-98 363.6 421 46.6
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 4.2e-97 359.8 446 46.2
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 5.2e-95 352.8 427 46.8
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 6.7e-95 352.4 446 44.2
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 9.7e-94 348.6 413 47.7
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 4.8e-93 346.3 418 45.2
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 1.4e-92 344.7 405 45.9
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 2.4e-92 344.0 384 47.7
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 3.1e-92 343.6 431 46.6
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 4.5e-91 339.7 436 45.2
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 4.5e-91 339.7 415 45.3
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 2.9e-90 337.0 426 45.8
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 5.0e-90 336.3 429 45.7
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 5.5e-89 332.8 429 45.2
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 2.7e-88 330.5 425 44.9
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.8e-87 327.8 363 48.5
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.8e-87 327.8 420 46.2
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 3.4e-86 323.6 420 45.5
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 4.4e-86 323.2 408 45.1
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 5.7e-86 322.8 415 46.3
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 5.9e-83 312.8 417 43.6
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 7.2e-81 305.8 422 41.2
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 2.7e-80 303.9 407 42.0
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 8.8e-79 298.9 360 46.4
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 8.3e-77 292.4 407 39.3
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 1.2e-75 288.5 327 48.9
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 2.7e-75 287.3 394 42.1
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 5.9e-75 286.2 373 42.1
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 2.5e-73 280.8 404 42.1
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 9.5e-73 278.9 329 49.2
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 2.8e-72 277.3 415 41.4
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 5.2e-71 273.1 397 39.3
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 1.2e-70 271.9 385 41.8
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 2.0e-70 271.2 317 47.3
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 2.2e-69 267.7 324 45.7
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 6.3e-69 266.2 325 44.3
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 5.4e-68 263.1 325 42.5
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 7.0e-68 262.7 323 46.4
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 4.6e-67 260.0 322 44.7
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 1.0e-66 258.8 395 40.3
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.7e-66 258.1 343 44.0
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 6.6e-66 256.1 394 39.8
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 1.1e-65 255.4 395 39.5
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 3.3e-65 253.8 395 39.2
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 1.2e-64 251.9 395 39.2
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 1.2e-64 251.9 395 39.2
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 4.7e-64 250.0 324 45.7
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 3.1e-63 247.3 203 61.1
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 1.2e-62 245.4 441 36.1
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 2.0e-62 244.6 203 60.1
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 7.5e-62 242.7 319 44.5
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 4.9e-61 240.0 421 35.6
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.9e-60 238.0 351 39.0
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 2.4e-60 237.7 394 37.1
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 9.2e-60 235.7 372 38.4
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 5.0e-58 229.9 320 43.1
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 1.5e-57 228.4 334 37.1
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 1.6e-56 224.9 327 43.1
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 6.2e-56 223.0 257 48.2
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 3.4e-54 217.2 325 41.8
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 7.5e-54 216.1 345 39.4
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 8.3e-53 212.6 337 39.2
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 3.5e-51 207.2 198 50.5
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 1.7e-50 204.9 421 32.8
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 2.3e-50 204.5 335 37.0
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 3.9e-50 203.8 197 54.3
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 3.3e-49 200.7 205 51.2
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 4.3e-49 200.3 270 41.1
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 8.1e-48 196.1 424 35.8
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 1.1e-47 195.7 322 40.1
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 5.1e-42 176.8 245 40.0
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 2.4e-36 157.9 129 62.0
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 3.0e-34 151.0 297 32.7
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 8.4e-29 132.9 119 52.1
Atru.chr11.1056 Acer truncatum HOM05D007280 ORTHO05D009108 8.1e-24 116.3 76 72.4
DCAR_003419 Daucus carota HOM05D000001 ORTHO05D010426 3.1e-07 61.2 228 23.2
MBI03_g47433_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 3.1e-07 61.2 41 61.0
Rhsim10G0182600 Rhododendron simsii HOM05D000001 ORTHO05D010426 4.1e-07 60.8 230 23.5
SalBow3G4579 Salvia bowleyana HOM05D007280 ORTHO05D009108 4.1e-07 60.8 77 39.0
TWI36G0656 Tripterygium wilfordii HOM05D000001 ORTHO05D010426 4.1e-07 60.8 231 22.1
FAN22G2182 Fragaria x ananassa HOM05D007280 ORTHO05D009108 2.6e-06 58.2 41 63.4
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 4.5e-06 57.4 192 26.0


User provided reference genes

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