Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 3.5e-82 308.5 191 100.0
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 3.3e-80 302.0 190 97.9
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 8.1e-63 244.2 188 81.4
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.3e-57 226.9 189 76.7
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 1.3e-44 183.7 110 80.9
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 2.9e-44 182.6 195 68.2
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 3.8e-44 182.2 112 80.4
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 8.5e-44 181.0 114 78.1
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 8.5e-44 181.0 114 78.1
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 1.1e-43 180.6 108 80.6
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.9e-43 179.9 114 77.2
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 2.5e-43 179.5 106 82.1
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 3.2e-43 179.1 177 57.1
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 2.1e-42 176.4 112 75.9
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 3.6e-42 175.6 111 79.3
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 4.6e-42 175.3 111 78.4
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 6.1e-42 174.9 111 75.7
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 6.1e-42 174.9 182 55.5
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.0e-41 174.1 108 78.7
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.3e-41 173.7 190 62.1
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 1.3e-41 173.7 198 52.5
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 3.0e-41 172.6 111 76.6
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 3.9e-41 172.2 111 76.6
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 5.1e-41 171.8 109 76.1
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 5.1e-41 171.8 109 76.1
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 5.1e-41 171.8 112 75.0
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 8.7e-41 171.0 111 73.9
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.1e-40 170.6 109 74.3
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.5e-40 170.2 189 54.0
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.5e-40 170.2 106 78.3
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 3.3e-40 169.1 111 73.9
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 4.3e-40 168.7 109 75.2
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 5.7e-40 168.3 114 74.6
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 9.7e-40 167.5 114 74.6
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 2.2e-39 166.4 112 73.2
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 2.2e-39 166.4 193 59.6
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 2.8e-39 166.0 112 71.4
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 2.8e-39 166.0 108 75.0
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 2.8e-39 166.0 112 71.4
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 3.7e-39 165.6 111 73.9
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 3.7e-39 165.6 191 51.8
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 4.8e-39 165.2 114 72.8
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 4.8e-39 165.2 109 73.4
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 6.3e-39 164.9 114 73.7
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 6.3e-39 164.9 112 67.9
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 8.2e-39 164.5 112 74.1
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 8.2e-39 164.5 112 69.6
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 1.4e-38 163.7 109 73.4
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 1.4e-38 163.7 112 74.1
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 1.8e-38 163.3 107 73.8
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 3.1e-38 162.5 111 73.9
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 3.1e-38 162.5 105 73.3
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 3.1e-38 162.5 117 70.1
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 5.3e-38 161.8 117 70.1
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 6.9e-38 161.4 108 71.3
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 6.9e-38 161.4 108 71.3
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-37 160.6 109 74.3
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 1.5e-37 160.2 111 68.5
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 2.0e-37 159.8 109 73.4
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 2.6e-37 159.5 108 72.2
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 2.6e-37 159.5 110 73.6
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.6e-37 159.5 109 70.6
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 2.6e-37 159.5 112 72.3
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 3.4e-37 159.1 108 74.1
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 3.4e-37 159.1 109 70.6
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.4e-37 159.1 109 70.6
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 4.5e-37 158.7 108 72.2
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 4.5e-37 158.7 109 69.7
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 5.9e-37 158.3 106 69.8
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 5.9e-37 158.3 110 73.6
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 5.9e-37 158.3 111 72.1
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 5.9e-37 158.3 105 70.5
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 7.7e-37 157.9 108 73.1
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 7.7e-37 157.9 108 73.1
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 7.7e-37 157.9 105 71.4
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.3e-36 157.1 109 69.7
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 1.3e-36 157.1 105 69.5
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.7e-36 156.8 108 71.3
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 3.8e-36 155.6 109 68.8
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 5.0e-36 155.2 109 72.5
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 6.5e-36 154.8 114 64.9
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 6.5e-36 154.8 112 67.9
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 6.5e-36 154.8 112 70.5
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 6.5e-36 154.8 105 68.6
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 8.5e-36 154.5 109 70.6
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 1.1e-35 154.1 112 67.0
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.4e-35 153.7 106 68.9
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 1.4e-35 153.7 107 68.2
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 2.5e-35 152.9 107 69.2
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 3.2e-35 152.5 109 67.0
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 7.2e-35 151.4 112 65.2
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 9.4e-35 151.0 116 66.4
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.6e-34 150.2 102 71.6
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 2.1e-34 149.8 108 69.4
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.7e-34 149.4 112 66.1
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 2.7e-34 149.4 112 63.4
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 6.1e-34 148.3 119 66.4
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 2.6e-32 142.9 104 65.4
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.3e-31 140.6 109 64.2
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 2.2e-31 139.8 109 58.7
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 6.3e-31 138.3 108 65.7
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 3.1e-30 136.0 173 47.4
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 4.1e-30 135.6 108 63.9
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 2.0e-29 133.3 108 62.0
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 7.7e-29 131.3 102 63.7
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 7.7e-29 131.3 125 57.6
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.7e-28 130.2 110 60.0
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 2.9e-28 129.4 111 57.7
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.4e-27 127.1 78 75.6
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-26 124.0 96 62.5
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 4.7e-26 122.1 135 67.4
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 2.2e-23 113.2 112 48.2
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.8e-23 112.8 74 74.3
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 2.8e-23 112.8 81 69.1
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 4.8e-23 112.1 107 49.5
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 2.4e-22 109.8 84 61.9
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.1e-22 109.0 98 51.0
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 5.9e-21 105.1 112 47.3
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 3.2e-19 99.4 80 57.5
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 5.5e-19 98.6 90 61.1
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.0e-17 94.4 52 84.6
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 3.8e-12 75.9 39 94.9
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 5.0e-12 75.5 95 37.9
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 3.6e-10 69.3 69 47.8


User provided reference genes

Program Settings