Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.9e-164 582.0 335 100.0
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 9.7e-120 434.1 252 87.3
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 2.4e-118 429.5 341 76.5
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 3.5e-117 425.6 255 83.9
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 6.5e-116 421.4 253 83.4
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 1.6e-114 416.8 258 82.6
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 2.7e-114 416.0 336 72.3
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 8.0e-114 414.5 251 83.7
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 3.0e-113 412.5 340 71.5
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 9.7e-112 407.5 332 67.2
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 6.3e-111 404.8 258 79.1
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.4e-110 403.7 258 79.1
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 2.4e-110 402.9 253 79.8
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 2.4e-110 402.9 257 77.8
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 3.1e-110 402.5 258 79.1
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 5.3e-110 401.7 250 79.6
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 9.1e-110 401.0 256 78.9
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.2e-109 400.6 246 82.1
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.6e-109 400.2 258 78.3
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 1.6e-109 400.2 340 64.7
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 4.5e-109 398.7 256 77.3
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 4.5e-109 398.7 259 77.2
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 5.9e-109 398.3 258 78.3
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.0e-108 397.5 256 77.7
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.0e-108 397.5 261 77.8
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 2.2e-108 396.4 257 78.2
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 2.2e-108 396.4 251 77.7
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 2.2e-108 396.4 317 66.6
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 2.9e-108 396.0 258 76.7
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 3.8e-108 395.6 257 77.0
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 6.5e-108 394.8 251 78.1
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 8.5e-108 394.4 259 77.6
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 8.5e-108 394.4 254 76.4
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.1e-107 394.0 252 77.8
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.1e-107 394.0 252 77.8
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 1.1e-107 394.0 253 75.9
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 1.5e-107 393.7 280 74.6
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 2.5e-107 392.9 258 75.6
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 3.2e-107 392.5 258 76.0
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 3.2e-107 392.5 255 78.4
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 5.5e-107 391.7 257 77.0
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 5.5e-107 391.7 249 77.9
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 7.2e-107 391.3 255 76.5
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 9.4e-107 391.0 257 77.0
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.2e-106 390.6 249 77.5
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.7e-106 389.4 249 77.5
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 2.7e-106 389.4 251 78.1
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 3.6e-106 389.0 337 63.5
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 3.6e-106 389.0 291 79.0
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.7e-106 388.7 249 77.1
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 6.1e-106 388.3 251 77.3
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 1.0e-105 387.5 252 77.0
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.4e-105 387.1 255 74.5
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 2.3e-105 386.3 258 75.6
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 2.0e-104 383.3 252 76.6
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 3.4e-104 382.5 253 75.1
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 7.5e-104 381.3 252 74.6
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 4.8e-103 378.6 248 75.0
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.4e-102 377.1 253 73.5
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 1.8e-102 376.7 254 73.6
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 2.4e-102 376.3 254 73.2
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 2.4e-102 376.3 245 75.1
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 4.1e-102 375.6 254 73.2
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 7.0e-102 374.8 253 73.1
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.2e-101 374.0 253 72.7
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 1.2e-101 374.0 248 74.2
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 2.0e-101 373.2 251 73.7
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 2.7e-101 372.9 253 72.7
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 2.7e-101 372.9 253 72.7
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 2.7e-101 372.9 258 73.6
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 3.5e-101 372.5 257 72.0
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.0e-100 370.9 252 72.6
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.0e-100 370.9 245 74.7
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.3e-100 370.5 245 74.3
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 2.3e-100 369.8 252 73.4
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 2.3e-100 369.8 256 72.7
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.3e-100 369.8 258 71.3
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 5.0e-100 368.6 245 74.3
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 8.6e-100 367.9 259 71.0
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.5e-99 367.1 249 71.9
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 3.2e-99 365.9 250 72.4
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 4.2e-99 365.5 322 63.4
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 5.5e-99 365.2 258 71.3
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 7.2e-99 364.8 259 71.0
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.2e-98 364.0 252 69.8
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 6.1e-98 361.7 255 69.8
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 6.1e-98 361.7 256 71.9
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 3.0e-97 359.4 246 71.1
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 2.2e-95 353.2 250 68.0
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 3.7e-95 352.4 250 70.8
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 6.3e-95 351.7 252 69.8
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 3.1e-94 349.4 264 69.3
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-93 347.4 250 69.2
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 4.5e-93 345.5 250 68.8
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 5.9e-93 345.1 250 68.4
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 3.8e-92 342.4 315 58.1
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 5.0e-92 342.0 325 57.8
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 5.6e-91 338.6 244 68.4
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.3e-79 300.8 190 97.9
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 3.2e-78 296.2 198 73.7
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 8.6e-76 288.1 248 62.5
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 1.1e-73 281.2 248 58.5
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 2.2e-71 273.5 252 54.0
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.4e-70 270.8 258 51.6
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 9.2e-70 268.1 253 56.9
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.2e-66 257.7 252 50.0
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 3.2e-62 243.0 165 72.7
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 1.2e-61 241.1 188 80.9
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 3.6e-58 229.6 238 48.3
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.8e-55 219.5 139 74.8
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 1.4e-54 217.6 202 52.5
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-53 214.5 166 68.1
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 3.9e-52 209.5 249 60.6
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.2e-50 202.2 187 61.0
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.1e-49 201.4 168 62.5
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 5.3e-49 199.1 141 68.8
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.3e-42 177.9 125 70.4
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.1e-38 164.9 167 58.1
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.4e-38 164.5 184 53.3
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 3.9e-36 156.4 104 72.1
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.4e-30 137.9 108 63.9
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 7.1e-30 135.6 95 73.7
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 8.7e-28 128.6 94 66.0
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 8.7e-28 128.6 122 56.6
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.5e-27 127.1 78 75.6
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 7.4e-27 125.6 74 81.1
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 2.9e-23 113.6 200 33.0
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 5.0e-23 112.8 81 69.1
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 4.2e-22 109.8 86 65.1
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 2.7e-21 107.1 80 67.5
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.9e-20 103.2 85 62.4
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 2.5e-19 100.5 56 89.3
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 5.7e-19 99.4 80 57.5
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 1.3e-18 98.2 50 94.0
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.7e-16 89.0 92 54.3
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 2.9e-15 87.0 99 55.6
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.1e-14 85.1 55 74.5
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.6e-13 81.3 180 29.4
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.6e-13 80.1 147 36.1
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 7.9e-13 79.0 66 62.1
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.9e-12 76.6 125 36.8
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 6.7e-12 75.9 39 94.9
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 6.3e-10 69.3 69 47.8
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 1.5e-08 64.7 45 60.0
Psat5g092440 Pisum sativum HOM05D060402 ORTHO05D330647 2.5e-06 57.4 183 31.1


User provided reference genes

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