Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12179_v3 Cicer arietinum L. HOM05D006920 ORTHO05D005895 0.0e+00 1595.5 837 100.0
Medtr5g096500 Medicago truncatula HOM05D006920 ORTHO05D005895 2.3e-247 859.4 898 58.7
Medtr3g053340 Medicago truncatula HOM05D006920 ORTHO05D005895 3.7e-245 852.0 859 61.2
TPR.G14423 Trifolium pratense HOM05D006920 ORTHO05D005895 7.6e-222 774.6 830 56.7
Lj6g0023447 Lotus japonicus HOM05D006920 ORTHO05D005895 3.1e-175 619.8 953 46.8
Psat5g132560 Pisum sativum HOM05D006920 ORTHO05D005895 4.9e-144 516.2 645 54.6
Lj3g0019860 Lotus japonicus HOM05D006920 ORTHO05D005895 1.2e-129 468.4 748 46.5
Glyma.14G213000 Glycine max HOM05D006920 ORTHO05D005895 4.7e-115 419.9 885 39.2
VMungo0331G1985 Vigna mungo HOM05D006920 ORTHO05D005895 2.5e-92 344.4 881 35.2
Glyma.18G092000 Glycine max HOM05D006920 ORTHO05D005895 1.6e-91 341.7 343 59.2
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 1.8e-90 338.2 880 35.8
arahy.Tifrunner.gnm1.ann1.IGMF9F Arachis hypogaea HOM05D006920 ORTHO05D005895 7.1e-87 326.2 832 35.7
Phvul.010G094400 Phaseolus vulgaris HOM05D006920 ORTHO05D005895 6.3e-75 286.6 754 35.4
Lalb_Chr25g0278561 Lupinus albus HOM05D006920 ORTHO05D005895 9.7e-60 236.1 561 38.9
arahy.Tifrunner.gnm1.ann1.J1TK4W Arachis hypogaea HOM05D006920 ORTHO05D005895 5.2e-45 187.2 629 30.5
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 3.0e-37 161.4 985 28.1
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 4.0e-37 161.0 780 28.3
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 1.2e-36 159.5 948 27.7
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 1.5e-36 159.1 954 26.9
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 2.4e-34 151.8 996 26.3
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 2.5e-31 141.7 961 26.4
FAN19G0513 Fragaria x ananassa HOM05D006920 ORTHO05D005895 2.3e-29 135.2 369 37.9
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 5.2e-29 134.0 901 26.6
MELO3C010521.2 Cucumis melo HOM05D006920 ORTHO05D005895 2.0e-28 132.1 450 33.1
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 3.4e-28 131.3 976 26.2
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 5.7e-28 130.6 761 26.1
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 4.9e-27 127.5 389 34.4
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 6.3e-27 127.1 853 25.8
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 4.1e-26 124.4 962 26.5
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 4.1e-26 124.4 805 26.7
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 5.4e-26 124.0 924 26.1
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 1.6e-25 122.5 383 33.4
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 1.3e-24 119.4 949 26.1
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 1.1e-23 116.3 917 26.8
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 5.6e-23 114.0 790 27.1
Oeu000320.3 Olea europaea HOM05D006920 ORTHO05D005895 8.0e-22 110.2 419 31.0
Lj3g0018977 Lotus japonicus HOM05D006920 ORTHO05D005895 5.8e-20 104.0 140 46.4
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 7.5e-20 103.6 919 25.8
AUR62033943 Chenopodium quinoa HOM05D036879 ORTHO05D005895 2.9e-19 101.7 672 25.3
Sed0019505 Sechium edule HOM05D006920 ORTHO05D005895 3.7e-19 101.3 919 24.4
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 4.9e-19 100.9 628 24.0
BcaB05g22299 Brassica carinata HOM05D010535 ORTHO05D005895 6.4e-19 100.5 403 28.8
Hma1.2p1_3164F.1_g333530 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 8.3e-19 100.1 52 76.9
Hma1.2p1_1540F.1_g289660 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 4.1e-18 97.8 170 44.7
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 7.0e-18 97.1 938 25.3
arahy.Tifrunner.gnm1.ann1.Y2Z108 Arachis hypogaea HOM05D006920 ORTHO05D005895 9.2e-18 96.7 185 39.5
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 1.2e-17 96.3 934 23.4
Lsat_1_v5_gn_7_36681 Lactuca sativa HOM05D006920 ORTHO05D005895 1.6e-17 95.9 110 47.3
Glyma.02G244050 Glycine max HOM05D006920 ORTHO05D005895 2.0e-17 95.5 106 58.5
ClCG11G016050 Citrullus lanatus HOM05D006920 ORTHO05D005895 4.6e-17 94.4 470 29.8
Gohir.A10G064850 Gossypium hirsutum HOM05D006920 ORTHO05D005895 3.9e-16 91.3 377 28.6
PGR142G4106 Punica granatum HOM05D006920 ORTHO05D005895 6.6e-16 90.5 931 24.0
HanXRQChr14g0436791 Helianthus annuus HOM05D006920 ORTHO05D005895 8.6e-16 90.1 51 72.5
Sc08g0008560 Simmondsia chinensis HOM05D006920 ORTHO05D005895 8.6e-16 90.1 524 27.1
FAN28G2753 Fragaria x ananassa HOM05D006920 ORTHO05D005895 1.9e-15 89.0 946 25.4
arahy.Tifrunner.gnm1.ann1.6V6YZC Arachis hypogaea HOM05D006920 ORTHO05D005895 9.5e-15 86.7 52 71.2
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 1.2e-14 86.3 902 22.7
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 8.0e-14 83.6 945 25.1
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 1.8e-13 82.4 607 24.4
Sed0003269 Sechium edule HOM05D006920 ORTHO05D005895 3.1e-13 81.6 931 24.6
DCAR_015050 Daucus carota HOM05D006920 ORTHO05D005895 5.2e-13 80.9 670 24.2
CsaV3_4G027920 Cucumis sativus L. HOM05D006920 ORTHO05D005895 6.8e-13 80.5 465 29.0
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 1.2e-12 79.7 597 25.8
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 1.5e-12 79.3 238 29.8
Eucgr.C01628 Eucalyptus grandis HOM05D006920 ORTHO05D005895 2.0e-12 79.0 367 27.2
FAN26G3372 Fragaria x ananassa HOM05D006920 ORTHO05D005895 2.6e-12 78.6 927 24.3
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 3.4e-12 78.2 720 25.0
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 4.4e-12 77.8 946 22.4
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 7.5e-12 77.0 944 24.7
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 2.2e-11 75.5 453 28.3
Lj4A292T33 Lonicera japonica HOM05D006920 ORTHO05D005895 3.7e-11 74.7 204 35.8
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 4.9e-11 74.3 919 22.2
DCAR_031337 Daucus carota HOM05D006920 ORTHO05D005895 8.3e-11 73.6 665 25.9
Eucgr.C01704 Eucalyptus grandis HOM05D006920 ORTHO05D005895 8.3e-11 73.6 395 29.6
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 1.1e-10 73.2 961 24.2
ATR0178G033 Amborella trichopoda HOM05D006920 ORTHO05D005895 2.4e-10 72.0 173 35.3
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 3.2e-10 71.6 858 25.2
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 4.1e-10 71.2 924 24.4
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 7.1e-10 70.5 932 23.3
Sp6g18630 Schrenkiella parvula HOM05D010535 ORTHO05D005895 2.1e-09 68.9 456 23.7
HanXRQChr10g0310341 Helianthus annuus HOM05D001214 ORTHO05D001029 4.6e-09 67.8 75 48.0
CARHR270670 Cardamine hirsuta HOM05D010535 ORTHO05D005895 1.3e-08 66.2 533 25.0
AL8G32790 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 3.0e-08 65.1 432 24.5
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 3.9e-08 64.7 878 24.0
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 5.1e-08 64.3 414 23.7
Os01g0572100 Oryza sativa ssp. japonica HOM05D006920 ORTHO05D005895 6.6e-08 63.9 169 32.0
Aa31LG11G5940 Aethionema arabicum HOM05D010535 ORTHO05D005895 1.9e-07 62.4 34 67.6
AT5G56930 Arabidopsis thaliana HOM05D010535 ORTHO05D005895 4.3e-07 61.2 422 23.0
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 7.3e-07 60.5 759 24.0
ECA233G4205 Erigeron canadensis HOM05D006920 ORTHO05D005895 7.3e-07 60.5 307 30.3
A02p08870 Brassica napus HOM05D010535 ORTHO05D005895 2.8e-06 58.5 243 26.3
BraA02t05956Z Brassica rapa HOM05D010535 ORTHO05D005895 2.8e-06 58.5 243 26.3


User provided reference genes

Program Settings