Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 3.0e-246 854.7 437 100.0
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 3.0e-214 748.4 437 85.6
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 2.4e-211 738.8 456 82.9
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.6e-210 736.1 457 82.7
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 2.0e-210 735.7 437 84.0
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.7e-209 732.6 437 83.1
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 5.0e-209 731.1 437 83.1
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 6.8e-206 720.7 451 81.2
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 5.7e-205 717.6 436 81.9
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 6.3e-204 714.1 436 82.3
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 1.6e-202 709.5 436 81.4
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 5.0e-193 677.9 404 82.7
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 8.0e-191 670.6 437 78.0
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 8.0e-191 670.6 437 78.0
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 6.8e-182 641.0 434 73.0
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.1e-179 633.6 435 73.1
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 3.9e-177 625.2 435 72.4
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.1e-176 623.6 435 72.2
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 1.1e-176 623.6 435 72.6
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.2e-175 620.2 435 71.7
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.1e-174 615.5 435 71.5
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 2.0e-173 612.8 436 71.3
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 3.4e-173 612.1 435 71.0
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.3e-172 610.1 436 70.9
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 2.9e-172 609.0 432 70.6
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 2.9e-172 609.0 430 71.2
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 4.9e-172 608.2 432 69.7
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.1e-171 607.1 433 69.5
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 9.2e-171 604.0 433 69.3
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.1e-170 602.8 432 68.8
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.7e-170 602.4 432 68.5
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.3e-169 600.1 439 69.5
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 6.6e-169 597.8 430 69.8
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.1e-168 597.0 430 70.0
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.9e-168 596.3 432 68.3
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.1e-167 592.8 432 68.3
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 3.6e-167 592.0 432 67.1
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 6.2e-167 591.3 442 68.1
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.8e-166 589.7 439 68.8
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 1.8e-166 589.7 439 68.8
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 6.9e-166 587.8 439 68.6
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.7e-164 583.2 430 68.6
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 6.4e-164 581.3 435 67.4
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 6.4e-164 581.3 408 70.8
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 3.2e-163 578.9 435 68.5
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 1.2e-162 577.0 433 65.8
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.2e-162 577.0 433 67.4
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 3.5e-162 575.5 439 66.3
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.0e-161 573.9 432 68.5
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.3e-161 573.5 435 66.4
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 3.9e-161 572.0 443 65.5
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.9e-160 569.7 440 65.2
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 5.6e-160 568.2 435 66.9
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 1.3e-159 567.0 435 65.3
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.3e-159 567.0 435 64.4
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.3e-159 567.0 458 63.8
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 2.4e-158 562.8 433 64.4
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.2e-157 560.5 433 65.8
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.5e-157 560.1 463 61.1
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 7.6e-157 557.8 428 65.2
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 6.4e-156 554.7 436 63.5
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.1e-150 537.3 433 63.0
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 4.5e-149 531.9 430 61.6
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 7.6e-149 531.2 431 62.2
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 2.9e-148 529.3 400 66.0
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 6.4e-148 528.1 391 67.8
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 8.4e-148 527.7 437 62.9
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 2.5e-147 526.2 391 68.3
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.0e-145 520.8 434 60.8
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 1.3e-145 520.4 451 58.3
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 2.3e-145 519.6 438 60.0
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 2.5e-144 516.2 431 60.3
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.1e-142 510.8 443 59.6
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 1.1e-142 510.8 443 62.5
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.4e-142 510.4 426 62.4
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 3.1e-142 509.2 442 59.7
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 5.3e-142 508.4 433 58.7
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.6e-141 506.1 453 57.0
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 2.6e-141 506.1 447 57.5
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 3.4e-141 505.8 454 56.8
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 3.8e-140 502.3 449 56.8
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 5.5e-139 498.4 429 57.6
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 9.3e-139 497.7 459 57.3
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.2e-138 497.3 442 58.6
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 2.7e-138 496.1 459 57.1
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 5.1e-137 491.9 437 59.0
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 6.7e-137 491.5 416 62.3
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 4.3e-136 488.8 381 63.3
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 7.4e-136 488.0 432 60.9
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 3.7e-135 485.7 433 58.4
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 6.3e-135 485.0 319 75.9
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.1e-134 484.2 433 58.9
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.8e-134 483.4 429 60.6
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 9.0e-134 481.1 435 57.0
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 9.0e-134 481.1 434 56.7
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 5.9e-133 478.4 432 56.0
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.0e-132 477.6 349 69.3
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 2.9e-132 476.1 383 63.7
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.1e-131 474.2 383 62.4
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 7.9e-130 468.0 394 60.4
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 2.3e-129 466.5 344 68.9
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 2.3e-129 466.5 394 60.2
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 6.7e-129 464.9 382 62.0
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.7e-128 461.8 427 55.7
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.4e-126 457.2 392 58.4
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.6e-125 453.0 434 58.3
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.9e-125 451.8 307 71.0
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 5.9e-125 451.8 419 55.8
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.8e-124 449.1 429 56.2
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 4.2e-123 445.7 428 54.9
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.5e-123 445.3 427 54.1
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.4e-120 435.6 464 52.6
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.2e-119 433.3 298 71.5
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 3.5e-117 426.0 420 54.3
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 7.7e-117 424.9 384 56.5
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.2e-115 419.5 331 62.5
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 1.8e-110 403.7 436 52.3
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.1e-110 402.5 352 58.5
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 5.3e-110 402.1 430 52.8
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 3.1e-94 349.7 280 63.9
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 2.0e-88 330.5 322 53.7
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 4.4e-88 329.3 435 46.9
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.4e-86 322.4 278 56.8
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 7.8e-85 318.5 278 57.6
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 3.9e-84 316.2 278 56.5
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 3.9e-84 316.2 278 56.5
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 6.6e-84 315.5 292 55.8
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.2e-79 300.4 278 54.7
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.4e-78 297.7 326 45.7
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 2.0e-77 293.9 354 46.3
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 6.6e-76 288.9 230 60.9
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 1.3e-71 274.6 157 90.4
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 8.3e-71 271.9 177 79.7
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.1e-70 268.9 169 82.2
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.7e-69 266.9 157 86.6
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 7.8e-69 265.4 155 87.7
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 2.5e-67 260.4 486 38.5
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 3.6e-66 256.5 192 62.5
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 4.4e-64 249.6 156 81.4
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 2.9e-63 246.9 163 67.5
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 5.4e-62 242.7 145 84.1
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 5.1e-60 236.1 141 85.1
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 4.7e-58 229.6 342 39.5
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 2.4e-57 227.3 133 88.0
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.5e-56 224.6 504 35.3
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 4.2e-54 216.5 184 63.0
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.2e-53 214.9 233 50.6
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 6.0e-53 212.6 275 41.5
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 5.1e-52 209.5 182 60.4
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 5.6e-51 206.1 122 84.4
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 9.0e-49 198.7 132 83.3
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 2.8e-42 177.2 145 55.2
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 6.9e-41 172.6 99 91.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 3.8e-39 166.8 178 55.1
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.1e-38 165.2 106 80.2
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.2e-37 161.8 305 37.0
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.2e-32 145.2 142 54.2
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 7.1e-30 136.0 119 56.3
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 2.7e-29 134.0 146 51.4
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 5.0e-23 113.2 68 88.2
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 5.0e-23 113.2 70 75.7
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 2.1e-21 107.8 215 36.3
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 8.7e-20 102.4 75 73.3
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 4.8e-18 96.7 56 91.1
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.1e-14 85.5 98 48.0
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 3.9e-12 77.0 257 28.4
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 2.5e-11 74.3 54 68.5


User provided reference genes

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