Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 5.1e-188 661.0 349 100.0
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 5.1e-156 554.7 350 84.9
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 5.1e-156 554.7 350 87.4
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 3.7e-154 548.5 349 83.7
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 9.1e-153 543.9 349 82.8
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 2.6e-152 542.3 349 82.2
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 3.2e-150 535.4 345 82.0
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 3.0e-140 502.3 310 85.2
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 3.6e-133 478.8 361 71.7
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 9.1e-129 464.2 364 70.9
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 1.6e-128 463.4 356 72.2
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 7.7e-128 461.1 366 71.6
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 1.7e-127 459.9 365 71.5
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 2.2e-127 459.5 342 74.0
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 2.2e-127 459.5 333 75.4
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 3.8e-127 458.8 362 71.3
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 6.5e-127 458.0 346 72.8
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 8.5e-127 457.6 383 68.9
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 3.2e-126 455.7 362 71.0
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 5.5e-126 454.9 353 72.2
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 9.5e-126 454.1 362 70.4
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 2.1e-125 453.0 362 70.2
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 4.7e-125 451.8 362 69.6
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 4.7e-125 451.8 383 68.7
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 4.7e-125 451.8 361 70.6
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 1.4e-124 450.3 370 68.9
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 1.8e-124 449.9 294 82.3
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 6.8e-124 448.0 348 71.6
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 1.5e-123 446.8 359 71.3
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 2.0e-123 446.4 339 73.7
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 2.0e-123 446.4 319 77.1
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 2.6e-123 446.0 319 77.1
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 2.6e-123 446.0 293 81.6
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 2.6e-123 446.0 318 76.1
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 3.4e-123 445.7 384 66.9
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 4.4e-123 445.3 364 69.5
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 5.7e-123 444.9 304 79.6
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 7.5e-123 444.5 266 87.2
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 7.5e-123 444.5 261 88.1
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 9.8e-123 444.1 334 72.8
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 1.7e-122 443.4 301 80.4
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 2.2e-122 443.0 386 66.3
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 2.8e-122 442.6 337 74.5
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 1.1e-121 440.7 338 73.4
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 1.6e-120 436.8 348 69.8
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 2.0e-120 436.4 262 84.4
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 3.5e-120 435.6 325 72.0
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 3.5e-120 435.6 262 86.6
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 7.8e-120 434.5 315 74.9
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 2.9e-119 432.6 262 84.0
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 2.9e-119 432.6 322 73.3
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 3.8e-119 432.2 321 72.9
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 5.0e-119 431.8 286 80.4
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 5.0e-119 431.8 284 81.0
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 6.6e-119 431.4 350 71.4
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 8.6e-119 431.0 361 67.3
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 8.6e-119 431.0 287 79.4
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 3.3e-118 429.1 297 79.1
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 4.3e-118 428.7 342 71.9
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 5.6e-118 428.3 284 79.6
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 5.6e-118 428.3 362 66.9
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 9.5e-118 427.6 280 83.9
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 2.1e-117 426.4 283 79.2
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 2.8e-117 426.0 294 77.6
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 2.8e-117 426.0 309 77.0
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 3.6e-117 425.6 320 71.2
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 6.1e-117 424.9 314 73.9
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 1.0e-116 424.1 291 79.7
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.0e-116 424.1 383 64.8
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 3.0e-116 422.5 294 76.9
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 3.0e-116 422.5 293 77.8
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 3.0e-116 422.5 291 79.0
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 6.8e-116 421.4 293 78.5
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 8.9e-116 421.0 293 78.5
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 8.9e-116 421.0 291 78.4
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 8.9e-116 421.0 291 78.4
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.5e-115 420.2 288 77.8
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 2.6e-115 419.5 291 78.4
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 2.6e-115 419.5 263 83.7
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 2.6e-115 419.5 291 79.0
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 5.7e-115 418.3 357 66.9
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 7.5e-115 417.9 263 83.7
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 7.5e-115 417.9 292 75.3
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 9.8e-115 417.5 307 74.9
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 8.3e-114 414.5 290 77.6
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 8.3e-114 414.5 336 70.2
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.7e-111 406.8 256 83.2
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 3.1e-108 396.0 274 76.6
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 4.0e-108 395.6 404 57.7
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 9.8e-107 391.0 322 68.3
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 2.3e-103 379.8 296 70.6
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 3.9e-103 379.0 341 65.1
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 8.6e-103 377.9 254 81.1
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 1.5e-102 377.1 254 79.5
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 1.9e-102 376.7 319 67.7
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 1.2e-101 374.0 302 69.9
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 3.1e-100 369.4 304 66.1
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 4.0e-100 369.0 294 71.4
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 2.0e-99 366.7 259 74.9
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 7.5e-99 364.8 324 65.7
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 6.0e-96 355.1 257 72.8
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 5.1e-95 352.1 327 63.9
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.5e-94 350.5 218 82.6
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 4.3e-94 349.0 277 68.2
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 8.4e-90 334.7 195 88.2
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 6.0e-88 328.6 354 57.3
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 2.4e-84 316.6 267 65.5
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 1.3e-82 310.8 260 64.6
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 6.0e-72 275.4 238 65.1
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.9e-70 270.4 305 57.7
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 5.3e-68 262.3 245 58.0
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 5.3e-68 262.3 273 54.9
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 2.5e-62 243.4 281 52.0
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 5.3e-60 235.7 271 55.0
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 1.0e-58 231.5 228 60.5
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 9.3e-57 224.9 168 74.4
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 3.3e-54 216.5 228 58.8
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 4.6e-48 196.1 138 78.3
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.1e-46 191.4 140 76.4
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.6e-40 171.0 98 91.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 9.7e-38 161.8 142 68.3
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 1.1e-36 158.3 204 53.9
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 9.4e-33 145.2 93 80.6
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 5.2e-31 139.4 157 54.1
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 1.5e-30 137.9 157 53.5
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 5.3e-28 129.4 87 78.2
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.1e-20 105.1 80 70.0
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.5e-17 94.7 96 57.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 3.0e-15 87.0 60 71.7
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 4.1e-12 76.6 225 31.6
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 7.7e-11 72.4 47 76.6
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 5.7e-06 56.2 41 70.7
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 9.8e-06 55.5 29 96.6


User provided reference genes

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