Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11520_v3 Cicer arietinum L. HOM05D003586 ORTHO05D009105 6.1e-48 193.7 93 100.0
Ca_15737_v3 Cicer arietinum L. HOM05D000646 ORTHO05D009105 9.2e-20 100.1 49 91.8
Glyma.06G068200 Glycine max HOM05D000646 ORTHO05D009105 3.9e-18 94.7 53 79.2
Potri.006G254500 Populus trichocarpa HOM05D000646 ORTHO05D009105 5.6e-17 90.9 48 83.3
arahy.Tifrunner.gnm1.ann1.JA8ULA Arachis hypogaea HOM05D000646 ORTHO05D009105 7.3e-17 90.5 49 81.6
Glyma.04G066751 Glycine max HOM05D000646 ORTHO05D009105 7.3e-17 90.5 49 81.6
VMungo1309G2095 Vigna mungo HOM05D000646 ORTHO05D009105 7.3e-17 90.5 49 81.6
Medtr3g107060 Medicago truncatula HOM05D000646 ORTHO05D009105 9.6e-17 90.1 53 75.5
Lj1g0011836 Lotus japonicus HOM05D000646 ORTHO05D009105 1.2e-16 89.7 49 81.6
Lalb_Chr23g0268511 Lupinus albus HOM05D000646 ORTHO05D009105 1.2e-16 89.7 47 83.0
Phvul.009G093000 Phaseolus vulgaris HOM05D000646 ORTHO05D009105 1.2e-16 89.7 48 83.3
Duzib187G1113 Durio zibethinus HOM05D000646 ORTHO05D009105 2.1e-16 89.0 48 81.2
TPR.G3114 Trifolium pratense HOM05D000646 ORTHO05D009105 2.1e-16 89.0 49 79.6
arahy.Tifrunner.gnm1.ann1.QIQ2JJ Arachis hypogaea HOM05D000646 ORTHO05D009105 2.8e-16 88.6 49 79.6
Sabra06G0198900 Salix brachista HOM05D000038 ORTHO05D000423 3.6e-16 88.2 48 79.2
Ciclev10008868m.g Citrus clementina HOM05D000646 ORTHO05D009105 4.7e-16 87.8 48 83.3
Manes.16G121900 Manihot esculenta HOM05D000646 ORTHO05D009105 1.1e-15 86.7 48 79.2
Thecc.09G024900 Theobroma cacao HOM05D000646 ORTHO05D009105 1.8e-15 85.9 48 77.1
Atru.chr7.2425 Acer truncatum HOM05D000646 ORTHO05D009105 4.0e-15 84.7 48 77.1
GSVIVG01035858001 Vitis vinifera HOM05D000646 ORTHO05D009105 4.0e-15 84.7 48 79.2
COL.COLO4_18858 Corchorus olitorius HOM05D000646 ORTHO05D009105 6.8e-15 84.0 49 73.5
Gohir.D06G100300 Gossypium hirsutum HOM05D000646 ORTHO05D009105 6.8e-15 84.0 69 58.0
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.2e-14 83.2 44 90.9
AL7G19520 Arabidopsis lyrata HOM05D000646 ORTHO05D009105 1.5e-14 82.8 48 72.9
BcaNung03953 Brassica carinata HOM05D000646 ORTHO05D009105 2.0e-14 82.4 48 72.9
CSS0034392 Camellia sinensis var. sinensis HOM05D000646 ORTHO05D009105 2.0e-14 82.4 48 75.0
CiPaw.07G223200 Carya illinoinensis HOM05D000646 ORTHO05D009105 2.0e-14 82.4 48 75.0
Hma1.2p1_0000F.1_g000020 Hydrangea macrophylla HOM05D000646 ORTHO05D009105 2.0e-14 82.4 48 75.0
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 2.0e-14 82.4 44 86.4
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 2.0e-14 82.4 44 86.4
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 2.0e-14 82.4 44 86.4
TWI34G0736 Tripterygium wilfordii HOM05D000646 ORTHO05D009105 2.0e-14 82.4 48 75.0
Gorai.010G115200 Gossypium raimondii HOM05D000646 ORTHO05D009105 2.6e-14 82.0 48 75.0
RcHm_v2.0_Chr6g0297961 Rosa chinensis HOM05D000646 ORTHO05D009105 3.4e-14 81.6 48 77.1
Sed0006311 Sechium edule HOM05D000646 ORTHO05D009105 3.4e-14 81.6 48 72.9
AT4G32320 Arabidopsis thaliana HOM05D000646 ORTHO05D009105 4.4e-14 81.3 48 70.8
Haze_21520 Corylus avellana HOM05D000646 ORTHO05D009105 4.4e-14 81.3 48 72.9
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 5.8e-14 80.9 44 88.6
Eucgr.C01740 Eucalyptus grandis HOM05D000646 ORTHO05D009105 5.8e-14 80.9 48 72.9
BcaNung03588 Brassica carinata HOM05D000646 ORTHO05D009105 7.6e-14 80.5 48 70.8
A03p61340 Brassica napus HOM05D000646 ORTHO05D009105 7.6e-14 80.5 48 70.8
C07p59190 Brassica napus HOM05D000646 ORTHO05D009105 7.6e-14 80.5 48 70.8
BolC7t46363H Brassica oleracea HOM05D000646 ORTHO05D009105 7.6e-14 80.5 48 70.8
BraA03t15178Z Brassica rapa HOM05D000646 ORTHO05D009105 7.6e-14 80.5 48 70.8
Thhalv10025686m.g Eutrema salsugineum HOM05D000646 ORTHO05D009105 7.6e-14 80.5 48 70.8
Gohir.A06G098220 Gossypium hirsutum HOM05D000646 ORTHO05D009105 7.6e-14 80.5 48 72.9
HanXRQChr13g0402951 Helianthus annuus HOM05D000646 ORTHO05D009105 7.6e-14 80.5 48 70.8
Carub.0007s0826 Capsella rubella HOM05D000646 ORTHO05D009105 9.9e-14 80.1 48 70.8
CARHR240220 Cardamine hirsuta HOM05D000646 ORTHO05D009105 1.3e-13 79.7 48 70.8
AUR62012394 Chenopodium quinoa HOM05D000646 ORTHO05D009105 1.3e-13 79.7 49 69.4
ClCG08G013360 Citrullus lanatus HOM05D000646 ORTHO05D009105 1.3e-13 79.7 48 72.9
MELO3C011261.2 Cucumis melo HOM05D000646 ORTHO05D009105 1.3e-13 79.7 48 72.9
CsaV3_2G032090 Cucumis sativus L. HOM05D000646 ORTHO05D009105 1.7e-13 79.3 48 72.9
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 2.2e-13 79.0 44 79.5
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 2.2e-13 79.0 44 79.5
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 2.2e-13 79.0 44 79.5
Sp7g30080 Schrenkiella parvula HOM05D000646 ORTHO05D009105 2.2e-13 79.0 48 68.8
Actinidia14603 Actinidia chinensis HOM05D000646 ORTHO05D009105 2.9e-13 78.6 48 68.8
PSO017G5755 Papaver somniferum HOM05D000646 ORTHO05D009105 2.9e-13 78.6 46 73.9
THA.LOC104803658 Tarenaya hassleriana HOM05D000646 ORTHO05D009105 2.9e-13 78.6 48 70.8
Nn8g39481 Nelumbo nucifera HOM05D000646 ORTHO05D009105 3.8e-13 78.2 48 72.9
PGR031G0023 Punica granatum HOM05D000646 ORTHO05D009105 3.8e-13 78.2 48 70.8
Lsat_1_v5_gn_6_21420 Lactuca sativa HOM05D000646 ORTHO05D009105 4.9e-13 77.8 48 66.7
Peaxi162Scf00785g00113 Petunia axillaris HOM05D000646 ORTHO05D009105 4.9e-13 77.8 48 68.8
Duzib150G0647 Durio zibethinus HOM05D000646 ORTHO05D009105 6.4e-13 77.4 47 72.3
PSO170G5186 Papaver somniferum HOM05D000646 ORTHO05D009105 6.4e-13 77.4 46 71.7
QL02p021720 Quercus lobata HOM05D000646 ORTHO05D009105 6.4e-13 77.4 48 68.8
EL10Ac2g04229 Beta vulgaris HOM05D000646 ORTHO05D009105 8.4e-13 77.0 48 68.8
Sc09g0008260 Simmondsia chinensis HOM05D000646 ORTHO05D009105 8.4e-13 77.0 48 68.8
MBI04_g29345_MAGBIO Magnolia biondii HOM05D000646 ORTHO05D009105 1.1e-12 76.6 48 68.8
Nitab4.5_0010580g0030 Nicotiana tabacum HOM05D000646 ORTHO05D009105 1.1e-12 76.6 48 66.7
ECA233G0229 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.4e-12 76.3 48 64.6
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 1.9e-12 75.9 44 75.0
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 2.4e-12 75.5 44 75.0
Oeu042700.2 Olea europaea HOM05D000646 ORTHO05D009105 2.4e-12 75.5 48 64.6
ATR1120G042 Amborella trichopoda HOM05D000646 ORTHO05D009105 3.2e-12 75.1 48 72.9
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 3.2e-12 75.1 44 75.0
Migut.A00043 Erythranthe guttata HOM05D000646 ORTHO05D009105 4.2e-12 74.7 48 64.6
CAN.G9.29 Capsicum annuum HOM05D000646 ORTHO05D009105 5.4e-12 74.3 48 64.6
FvH4_2g29080 Fragaria vesca HOM05D000646 ORTHO05D009105 5.4e-12 74.3 48 68.8
FAN15G2271 Fragaria x ananassa HOM05D000646 ORTHO05D009105 5.4e-12 74.3 48 68.8
FAN24G2162 Fragaria x ananassa HOM05D000646 ORTHO05D009105 5.4e-12 74.3 48 68.8
FAN27G0875 Fragaria x ananassa HOM05D000646 ORTHO05D009105 5.4e-12 74.3 48 68.8
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 5.4e-12 74.3 44 75.0
SGA_v2.0_scaffold64G21930 Striga asiatica HOM05D000646 ORTHO05D009105 5.4e-12 74.3 48 64.6
CANSAT01G3003 Cannabis sativa HOM05D000646 ORTHO05D009105 9.3e-12 73.6 48 64.6
Cc08_g00640 Coffea canephora HOM05D000646 ORTHO05D009105 9.3e-12 73.6 48 64.6
Nitab4.5_0000209g0170 Nicotiana tabacum HOM05D000646 ORTHO05D009105 1.2e-11 73.2 48 64.6
Solyc08g059760.3 Solanum lycopersicum HOM05D000646 ORTHO05D009105 1.6e-11 72.8 48 62.5
PGSC0003DMG400032777 Solanum tuberosum HOM05D000646 ORTHO05D009105 1.6e-11 72.8 48 62.5
unitig_748.g8183 Utricularia gibba HOM05D000646 ORTHO05D009105 1.6e-11 72.8 48 64.6
Prupe.1G481000 Prunus persica HOM05D000646 ORTHO05D009105 2.7e-11 72.0 46 67.4
CDE04G2247 Ceratophyllum demersum HOM05D000646 ORTHO05D009105 7.8e-11 70.5 48 60.4
SalBow4G2668 Salvia bowleyana HOM05D000646 ORTHO05D009105 7.8e-11 70.5 48 62.5
MD15G1125400 Malus domestica HOM05D000646 ORTHO05D009105 1.0e-10 70.1 46 67.4
MD08G1150400 Malus domestica HOM05D000646 ORTHO05D009105 1.7e-10 69.3 46 65.2
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 3.9e-10 68.2 46 63.0
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 5.1e-10 67.8 46 63.0
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 1.5e-09 66.2 46 65.2
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 1.5e-09 66.2 46 65.2
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 2.5e-09 65.5 43 67.4
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 2.5e-09 65.5 46 58.7
Os08g0522400 Oryza sativa ssp. japonica HOM05D000646 ORTHO05D009105 2.5e-09 65.5 48 58.3
Zm00001eb035440 Zea mays HOM05D000646 ORTHO05D009105 2.5e-09 65.5 48 58.3
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 3.3e-09 65.1 43 67.4
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 3.3e-09 65.1 43 65.1
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 3.3e-09 65.1 46 67.4
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 4.3e-09 64.7 40 70.0
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 9.6e-09 63.5 43 60.5
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 9.6e-09 63.5 43 60.5
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 9.6e-09 63.5 43 62.8
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 9.6e-09 63.5 43 62.8
Mapoly0059s0017 Marchantia polymorpha HOM05D000646 ORTHO05D009105 1.6e-08 62.8 46 56.5
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 2.8e-08 62.0 46 56.5
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 3.6e-08 61.6 46 63.0
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 4.8e-08 61.2 46 63.0
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 4.8e-08 61.2 44 56.8
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 4.8e-08 61.2 43 60.5
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 6.2e-08 60.8 46 60.9
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 6.2e-08 60.8 46 63.0
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 6.2e-08 60.8 44 61.4
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 8.1e-08 60.5 50 48.0
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 8.1e-08 60.5 43 65.1
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 8.1e-08 60.5 43 58.1
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 8.1e-08 60.5 44 54.5
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 1.1e-07 60.1 44 59.1
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 1.1e-07 60.1 40 60.0
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 1.4e-07 59.7 42 54.8
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 1.8e-07 59.3 40 65.0
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 1.8e-07 59.3 46 54.3
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 1.8e-07 59.3 43 60.5
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 2.4e-07 58.9 42 66.7
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 2.4e-07 58.9 44 52.3
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 2.4e-07 58.9 43 55.8
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.4e-07 58.9 43 58.1
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 3.1e-07 58.5 43 58.1
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 3.1e-07 58.5 43 58.1
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 3.1e-07 58.5 43 58.1
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 3.1e-07 58.5 43 58.1
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 3.1e-07 58.5 44 54.5
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 3.1e-07 58.5 43 58.1
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 5.3e-07 57.8 43 58.1
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 5.3e-07 57.8 44 50.0
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 6.9e-07 57.4 44 52.3
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 6.9e-07 57.4 44 52.3
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 9.0e-07 57.0 44 52.3
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 1.2e-06 56.6 44 50.0
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 1.2e-06 56.6 44 52.3
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 1.2e-06 56.6 43 53.5
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 1.2e-06 56.6 40 65.0
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 1.2e-06 56.6 43 53.5
AagrBONN_evm.TU.Sc2ySwM_368.1263 Anthoceros agrestis HOM05D000646 ORTHO05D009105 1.5e-06 56.2 41 51.2
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 1.5e-06 56.2 42 54.8
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 1.5e-06 56.2 44 52.3
Pp3c17_7560 Physcomitrium patens HOM05D000646 ORTHO05D009105 1.5e-06 56.2 48 50.0
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.5e-06 56.2 44 54.5
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 2.0e-06 55.8 44 50.0
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 2.0e-06 55.8 44 50.0
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 2.0e-06 55.8 44 50.0
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 2.0e-06 55.8 44 50.0
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 2.0e-06 55.8 43 51.2
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 2.6e-06 55.5 43 48.8
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 3.4e-06 55.1 40 52.5
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 3.4e-06 55.1 43 55.8
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 3.4e-06 55.1 44 54.5
SMO367G0848 Selaginella moellendorffii HOM05D000646 ORTHO05D009105 3.4e-06 55.1 48 54.2
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 3.4e-06 55.1 43 48.8
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 3.4e-06 55.1 43 48.8
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 4.4e-06 54.7 43 53.5
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 4.4e-06 54.7 43 53.5
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 5.8e-06 54.3 44 50.0
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 5.8e-06 54.3 44 50.0
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 5.8e-06 54.3 40 57.5
Cre06.g285150 Chlamydomonas reinhardtii HOM05D000646 ORTHO05D009105 5.8e-06 54.3 49 49.0
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 5.8e-06 54.3 45 53.3
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 5.8e-06 54.3 42 54.8
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 7.6e-06 53.9 44 50.0
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 7.6e-06 53.9 35 62.9
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 7.6e-06 53.9 35 62.9
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 9.9e-06 53.5 43 46.5
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 9.9e-06 53.5 42 54.8
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 9.9e-06 53.5 44 47.7


User provided reference genes

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