Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 3.7e-192 674.9 380 100.0
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 8.6e-165 583.9 385 87.5
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 1.0e-157 560.5 383 84.6
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 1.7e-157 559.7 387 84.0
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 6.8e-154 547.7 395 80.8
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.2e-153 547.0 395 80.5
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.2e-153 547.0 387 81.9
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 5.8e-153 544.7 387 82.2
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 7.6e-153 544.3 403 78.7
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 7.3e-148 527.7 394 78.2
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 2.8e-147 525.8 390 79.5
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 4.7e-147 525.0 394 78.7
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 4.0e-146 521.9 394 76.6
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 2.0e-145 519.6 395 76.5
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.0e-145 519.6 395 76.5
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.0e-145 519.6 395 76.5
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 2.6e-145 519.2 395 77.2
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 5.8e-145 518.1 394 76.9
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 5.8e-145 518.1 394 77.2
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 5.8e-145 518.1 394 77.2
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.6e-145 517.7 395 76.2
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.6e-145 517.7 395 76.2
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.7e-144 516.5 394 77.2
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 3.8e-144 515.4 393 74.3
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.9e-144 515.0 395 76.2
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.4e-143 513.5 394 76.4
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 3.2e-143 512.3 361 85.0
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 7.1e-143 511.1 394 74.9
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.1e-142 509.6 394 75.9
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 6.0e-142 508.1 397 74.1
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 7.8e-142 507.7 394 74.4
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 7.8e-142 507.7 394 74.6
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 1.0e-141 507.3 409 73.6
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 2.3e-141 506.1 394 73.1
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 3.0e-141 505.8 394 73.9
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 3.0e-141 505.8 394 74.9
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 3.0e-141 505.8 394 73.1
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 3.9e-141 505.4 394 73.9
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 3.9e-141 505.4 394 74.1
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 6.6e-141 504.6 394 74.1
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 8.7e-141 504.2 393 72.8
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 1.5e-140 503.4 393 72.8
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 3.3e-140 502.3 394 73.6
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 4.3e-140 501.9 394 75.6
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 5.6e-140 501.5 394 74.6
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 2.8e-139 499.2 394 74.9
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 2.8e-139 499.2 394 72.3
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 3.6e-139 498.8 394 71.8
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 6.2e-139 498.0 392 74.7
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 8.1e-139 497.7 394 75.1
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 8.1e-139 497.7 394 72.6
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 4.0e-138 495.4 390 72.1
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 5.3e-138 495.0 389 72.2
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 9.0e-138 494.2 396 70.2
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 9.0e-138 494.2 389 73.5
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.5e-137 493.4 416 71.2
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 3.4e-137 492.3 404 72.3
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 2.2e-136 489.6 394 73.9
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 2.9e-136 489.2 395 73.4
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 5.4e-135 485.0 438 68.3
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 7.1e-135 484.6 394 65.0
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 9.3e-135 484.2 392 71.2
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 4.6e-134 481.9 390 73.3
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 4.6e-134 481.9 394 68.8
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 7.9e-134 481.1 394 68.3
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 3.0e-133 479.2 394 66.5
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 6.7e-133 478.0 386 63.5
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 1.9e-132 476.5 394 65.0
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 4.3e-132 475.3 394 64.5
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 5.6e-132 474.9 396 63.9
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 9.6e-132 474.2 394 65.0
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 9.6e-132 474.2 394 64.2
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 1.3e-131 473.8 337 84.6
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 1.6e-131 473.4 391 70.6
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 6.2e-131 471.5 390 64.9
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 8.1e-131 471.1 394 63.5
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 2.4e-130 469.5 394 66.2
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 2.4e-130 469.5 390 64.4
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 1.2e-129 467.2 390 64.1
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 1.2e-129 467.2 390 64.1
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 4.5e-129 465.3 395 69.6
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 7.6e-129 464.5 395 63.8
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 7.6e-129 464.5 378 70.4
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.3e-128 463.8 370 74.3
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 6.4e-128 461.5 396 69.4
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 4.6e-126 455.3 370 73.2
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 1.0e-125 454.1 392 69.6
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 1.1e-122 444.1 393 67.4
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 6.9e-122 441.4 394 68.0
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.2e-121 440.7 378 63.2
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 2.6e-121 439.5 392 66.1
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 2.7e-118 429.5 395 59.7
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 2.7e-118 429.5 387 68.2
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 7.4e-116 421.4 426 63.1
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 9.7e-116 421.0 380 59.5
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.1e-114 415.6 358 65.6
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.9e-111 406.8 394 65.2
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 6.3e-99 365.2 371 56.1
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 1.1e-95 354.4 394 49.7
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 1.6e-94 350.5 385 50.6
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 3.1e-90 336.3 394 51.0
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 2.1e-86 323.6 291 68.4
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 4.7e-86 322.4 394 47.7
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 2.7e-78 296.6 394 48.7
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.1e-74 284.6 239 61.5
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 1.1e-74 284.6 293 55.3
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 5.9e-73 278.9 328 60.7
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 1.0e-69 268.1 294 54.4
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 8.9e-69 265.0 364 45.3
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 1.3e-67 261.2 375 53.9
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 5.8e-52 209.1 165 69.1
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.3e-51 208.0 541 31.8
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 1.1e-50 204.9 182 57.7
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 2.4e-50 203.8 182 57.7
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 6.6e-48 195.7 153 71.2
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 2.5e-47 193.7 278 45.3
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 1.8e-45 187.6 405 33.1
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 9.2e-42 175.3 411 33.3
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 1.5e-39 167.9 384 32.3
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 2.4e-37 160.6 122 71.3
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 4.0e-37 159.8 120 70.0
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 8.9e-37 158.7 205 48.8
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 1.3e-32 144.8 91 79.1
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 6.2e-30 136.0 160 48.1
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 2.0e-28 131.0 125 63.2
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 7.6e-28 129.0 71 78.9
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 3.2e-26 123.6 88 73.9
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 1.7e-24 117.9 108 55.6
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 3.0e-24 117.1 71 81.7
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.9e-24 116.7 88 67.0
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 2.5e-23 114.0 114 51.8
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 6.2e-22 109.4 130 63.1
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 3.4e-20 103.6 92 57.6
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 3.4e-20 103.6 50 92.0
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 9.3e-18 95.5 145 41.4
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.6e-17 94.7 149 40.9
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 1.9e-15 87.8 80 62.5
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 1.5e-12 78.2 51 76.5
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 2.6e-12 77.4 48 62.5
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.7e-11 74.7 46 82.6
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 4.9e-11 73.2 44 81.8
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 1.1e-10 72.0 39 87.2
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 9.3e-10 68.9 89 44.9
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 3.0e-08 63.9 35 91.4
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 5.7e-07 59.7 38 73.7


User provided reference genes

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