Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 0.0e+00 1473.4 1357 100.0
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 4.1e-249 865.9 1359 69.1
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 6.7e-236 822.0 1361 60.0
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 7.4e-235 818.5 1361 62.7
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 2.8e-234 816.6 1361 58.3
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.0e-231 808.1 1361 64.5
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 6.5e-223 778.9 1360 59.8
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 8.0e-213 745.3 1360 57.4
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 8.8e-212 741.9 1363 57.8
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 8.3e-210 735.3 1362 61.2
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 2.9e-199 700.3 1361 58.5
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 5.7e-195 686.0 1363 56.5
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 1.0e-175 622.1 1384 50.7
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 9.6e-158 562.4 1382 50.8
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 4.9e-146 523.5 1369 47.6
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 1.9e-145 521.5 999 54.7
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 4.6e-144 516.9 1379 51.1
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 4.5e-139 500.4 1334 49.1
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 2.9e-138 497.7 1387 55.7
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 3.0e-135 487.6 1376 50.9
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 1.8e-132 478.4 1384 50.4
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 2.6e-131 474.6 1537 40.5
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 4.6e-128 463.8 1351 47.9
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.8e-127 461.8 1386 49.8
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.0e-122 446.0 1382 44.6
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 7.9e-120 436.4 1387 44.4
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 1.0e-119 436.0 1384 43.9
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 1.8e-119 435.3 1456 44.0
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 2.4e-116 424.9 1073 39.5
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.1e-116 424.1 1376 47.6
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 9.1e-116 422.9 1296 45.3
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 3.8e-114 417.5 625 49.8
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 4.7e-112 410.6 1405 44.4
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 7.9e-112 409.8 1405 44.3
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 3.9e-111 407.5 1416 47.1
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 3.7e-109 401.0 1586 39.1
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 7.0e-108 396.7 1377 46.6
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 9.1e-108 396.4 1377 49.5
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 1.0e-106 392.9 1581 38.1
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.2e-106 391.7 1377 49.7
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 2.9e-106 391.3 1345 45.7
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 6.5e-106 390.2 1377 44.6
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 6.5e-106 390.2 1375 41.1
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 7.2e-105 386.7 1575 36.3
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.7e-104 384.8 1377 49.1
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 4.8e-101 374.0 1382 43.4
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 6.3e-101 373.6 1377 46.9
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 7.0e-100 370.2 1391 44.6
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 7.0e-100 370.2 1442 39.9
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 4.7e-96 357.5 621 44.4
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 2.3e-95 355.1 1568 34.9
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 8.8e-95 353.2 1439 39.7
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 1.2e-94 352.8 1374 42.7
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 1.4e-92 345.9 1583 39.2
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.0e-90 339.7 1395 44.1
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.3e-90 339.3 1381 39.1
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.1e-88 330.5 646 42.7
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 6.8e-87 327.0 1633 31.7
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 4.5e-83 314.3 1532 39.6
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 1.3e-82 312.8 724 34.8
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 5.0e-82 310.8 1070 41.3
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.9e-81 308.9 1388 35.9
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 9.5e-81 306.6 1388 40.9
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 8.0e-80 303.5 1384 38.4
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 4.9e-77 294.3 1412 37.7
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 2.4e-76 292.0 620 39.0
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 3.2e-76 291.6 1378 37.7
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 7.0e-76 290.4 618 39.2
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 3.9e-74 284.6 723 34.7
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.8e-71 275.8 1409 44.6
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 8.9e-71 273.5 1394 49.4
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 7.5e-70 270.4 1039 49.8
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 9.8e-70 270.0 1396 41.8
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 9.8e-70 270.0 1396 41.8
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 8.3e-69 266.9 1375 35.9
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 4.1e-68 264.6 1386 39.8
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 5.4e-68 264.2 1383 34.8
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 2.0e-67 262.3 1544 36.3
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.7e-66 259.2 1582 39.6
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 5.6e-65 254.2 1385 37.0
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 7.3e-65 253.8 1633 33.7
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 9.5e-65 253.4 1384 42.0
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 4.0e-63 248.1 1406 37.4
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 2.7e-59 235.3 1386 43.2
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 1.5e-57 229.6 620 44.0
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 7.6e-54 217.2 1382 37.7
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 4.1e-52 211.5 645 29.8
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 1.2e-51 209.9 428 37.4
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 3.3e-49 201.8 616 33.1
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 8.1e-48 197.2 516 40.1
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.4e-45 187.6 294 44.2
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.3e-42 179.1 549 33.5
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.3e-41 175.3 557 29.6
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.6e-40 172.9 584 30.1
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.8e-39 169.5 642 33.2
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 5.8e-38 164.5 715 28.0
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.2e-37 162.5 611 36.7
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 3.2e-36 158.7 236 42.8
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 2.7e-35 155.6 418 35.4
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 4.6e-35 154.8 580 35.9
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 2.3e-34 152.5 280 40.0
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 1.5e-33 149.8 280 41.8
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 1.1e-31 143.7 250 48.4
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 1.4e-31 143.3 636 31.6
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 4.0e-31 141.7 649 27.6
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 6.9e-31 141.0 400 32.5
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 3.4e-30 138.7 582 35.7
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.8e-30 137.9 418 33.3
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 1.3e-29 136.7 229 38.9
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 9.3e-28 130.6 1418 34.3
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 1.6e-27 129.8 227 42.3
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 4.6e-27 128.3 531 27.3
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 1.0e-26 127.1 280 36.8
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.1e-25 123.6 573 35.3
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 3.3e-25 122.1 192 43.8
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 5.6e-25 121.3 1375 35.2
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 6.2e-24 117.9 241 46.1
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 3.4e-22 112.1 141 50.4
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.4e-22 112.1 634 32.8
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 1.1e-20 107.1 241 43.6
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 4.2e-20 105.1 639 26.8
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 2.1e-19 102.8 186 44.1
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 3.5e-19 102.1 308 31.2
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 3.5e-19 102.1 198 36.4
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.6e-19 101.7 375 29.9
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 7.9e-19 100.9 354 33.9
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 2.3e-18 99.4 644 25.5
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.3e-17 95.1 210 38.6
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 5.7e-17 94.7 614 34.7
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.3e-16 93.6 243 33.3
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 2.8e-16 92.4 625 28.6
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.7e-16 92.0 1392 44.5
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 4.8e-16 91.7 622 27.8
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 2.6e-14 85.9 407 33.2
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 1.0e-13 84.0 349 32.7
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 1.0e-13 84.0 349 32.7
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.0e-13 84.0 241 32.4
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.7e-13 83.2 620 31.1
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 1.7e-13 83.2 508 36.2
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.8e-13 82.0 157 51.6
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.8e-13 82.0 241 32.0
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 5.0e-13 81.6 243 38.3
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.9e-12 79.7 511 26.6
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 3.2e-12 79.0 83 55.4
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 5.5e-12 78.2 340 28.5
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 5.5e-12 78.2 273 40.7
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 7.2e-12 77.8 703 28.6
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 3.6e-11 75.5 488 28.3
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.1e-09 70.5 180 33.3
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.1e-09 70.5 180 33.3
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 1.1e-09 70.5 120 41.7
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 9.7e-09 67.4 555 23.6
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-08 67.0 637 22.8
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 2.0e-06 59.7 96 42.7


User provided reference genes

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