Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 0.0e+00 1347.8 695 100.0
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 0.0e+00 1186.0 674 89.0
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 0.0e+00 1175.2 674 88.1
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 0.0e+00 1170.2 697 85.4
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 0.0e+00 1155.6 699 84.4
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 0.0e+00 1151.7 699 84.1
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 0.0e+00 1144.8 695 83.6
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 0.0e+00 1112.4 678 83.3
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 0.0e+00 1098.6 674 81.5
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 0.0e+00 1087.4 703 81.7
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 5.0e-304 1047.3 703 79.8
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 1.8e-285 985.7 680 72.8
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 4.0e-285 984.6 681 72.4
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 3.0e-280 968.4 682 71.7
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 1.1e-277 959.9 696 70.0
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 1.4e-277 959.5 819 64.5
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 8.9e-277 956.8 695 69.9
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 2.6e-276 955.3 682 71.0
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 3.4e-276 954.9 676 71.3
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 1.7e-275 952.6 684 70.0
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 1.4e-274 949.5 683 70.3
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 8.7e-272 940.3 694 68.9
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 1.5e-271 939.5 685 70.1
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 1.9e-271 939.1 682 69.4
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 2.5e-271 938.7 708 69.9
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 2.5e-271 938.7 708 69.9
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 2.5e-271 938.7 670 69.7
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 3.3e-271 938.3 702 68.8
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 3.6e-270 934.9 676 69.7
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 4.8e-270 934.5 682 68.5
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 8.1e-270 933.7 710 67.7
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 9.0e-269 930.2 682 67.9
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 9.0e-269 930.2 682 67.9
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 3.8e-267 924.9 701 68.5
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.4e-266 922.9 682 67.4
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 7.1e-266 920.6 679 68.5
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 1.6e-265 919.5 678 68.4
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 6.0e-265 917.5 676 68.6
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 6.6e-264 914.1 694 67.1
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.9e-263 912.5 679 68.6
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 3.3e-263 911.8 679 68.0
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 3.3e-263 911.8 682 68.0
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 5.6e-263 911.0 666 68.3
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 1.1e-261 906.7 700 65.6
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 1.8e-261 906.0 674 66.9
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 2.2e-259 899.0 678 68.0
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 8.4e-259 897.1 682 66.7
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 3.0e-256 888.6 681 65.9
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 1.1e-255 886.7 679 67.3
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 1.6e-254 882.9 727 62.3
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 2.8e-254 882.1 680 66.0
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 8.1e-254 880.6 726 62.3
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 1.4e-253 879.8 666 66.5
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 2.0e-252 875.9 688 64.7
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 2.2e-251 872.5 681 66.4
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 6.5e-251 870.9 681 65.3
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 8.4e-251 870.5 751 62.3
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 3.9e-248 861.7 696 63.6
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 3.9e-248 861.7 683 64.4
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 5.1e-248 861.3 658 65.3
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 8.2e-246 854.0 681 64.6
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.4e-245 852.4 651 65.1
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 9.0e-245 850.5 653 69.1
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 4.2e-242 841.6 710 62.3
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 3.9e-240 835.1 536 79.7
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.5e-239 832.4 710 60.1
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 1.4e-237 826.6 704 62.6
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 1.8e-237 826.2 680 62.1
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 1.2e-236 823.5 707 60.8
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 7.7e-236 820.8 680 61.6
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 1.9e-234 816.2 689 61.5
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 2.5e-234 815.8 681 61.5
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 5.5e-234 814.7 685 61.2
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 9.4e-234 813.9 681 61.4
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 1.6e-233 813.1 681 61.4
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 3.6e-233 812.0 681 61.8
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 6.1e-233 811.2 679 61.0
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 1.8e-232 809.7 585 68.5
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 6.7e-232 807.7 679 60.5
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 6.7e-232 807.7 677 61.2
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 4.3e-231 805.1 679 60.8
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 5.7e-231 804.7 684 60.7
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 7.4e-231 804.3 684 60.7
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 6.9e-229 797.7 670 61.0
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 3.8e-227 792.0 679 59.8
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 4.2e-226 788.5 688 59.6
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 2.7e-225 785.8 688 59.4
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 3.9e-224 781.9 1006 45.7
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 8.8e-224 780.8 689 60.2
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 8.8e-224 780.8 689 60.2
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 5.7e-223 778.1 694 59.7
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 2.9e-219 765.8 738 57.3
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 2.8e-214 749.2 512 73.4
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 2.0e-212 743.0 672 57.1
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 2.6e-207 726.1 452 78.3
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 4.1e-205 718.8 690 54.9
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 5.0e-203 711.8 690 55.4
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 2.6e-199 699.5 679 56.1
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 5.7e-199 698.4 717 51.9
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 1.4e-197 693.7 674 54.0
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 8.6e-195 684.5 505 67.5
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 3.3e-194 682.6 698 50.6
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 7.8e-188 661.4 678 53.4
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 2.6e-175 619.8 438 71.0
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 4.3e-162 575.9 423 64.8
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.0e-155 554.7 589 51.3
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 3.3e-154 549.7 704 43.8
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 3.3e-154 549.7 532 55.3
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 1.9e-141 507.3 555 52.8
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 1.1e-136 491.5 669 41.4
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 2.6e-135 486.9 713 39.4
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 1.7e-118 431.0 540 43.7
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 6.7e-115 419.1 458 51.7
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 4.3e-114 416.4 434 52.1
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 5.3e-104 382.9 405 55.1
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 1.0e-99 368.6 299 64.2
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 2.7e-95 354.0 429 49.4
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 2.5e-85 320.9 372 51.6
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 6.1e-84 316.2 324 54.3
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 1.8e-83 314.7 658 35.4
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 3.0e-83 313.9 218 71.6
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 4.7e-76 290.0 619 33.3
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 5.2e-67 260.0 256 55.9
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 3.7e-65 253.8 265 55.8
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 3.2e-64 250.8 258 54.7
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 5.4e-64 250.0 358 45.8
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.7e-63 247.7 262 52.7
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 3.5e-63 247.3 263 55.5
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 3.5e-63 247.3 252 52.8
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 3.3e-61 240.7 263 54.8
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 2.3e-54 218.0 141 75.2
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 2.5e-53 214.5 131 77.9
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 1.6e-52 211.8 186 58.6
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 2.3e-46 191.4 233 47.6
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 2.1e-44 184.9 206 54.9
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 1.8e-43 181.8 106 80.2
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 2.4e-43 181.4 119 70.6
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 4.0e-43 180.6 207 50.2
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 1.3e-38 165.6 102 75.5
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 3.9e-38 164.1 102 74.5
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 1.6e-36 158.7 175 48.6
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 3.6e-36 157.5 119 68.1
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 9.0e-35 152.9 161 49.7
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.6e-34 149.8 89 77.5
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.6e-34 149.8 89 77.5
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.6e-34 149.8 89 77.5
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 7.6e-34 149.8 103 72.8
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.9e-32 145.2 85 77.6
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 2.7e-31 141.4 120 60.8
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-30 139.4 104 62.5
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 1.8e-30 138.7 79 77.2
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.5e-29 135.6 79 78.5
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 1.9e-29 135.2 149 48.3
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 1.9e-29 135.2 107 59.8
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 2.6e-26 124.8 70 77.1
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 4.5e-26 124.0 106 57.5
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 9.3e-24 116.3 72 69.4
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 6.0e-23 113.6 183 41.5
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 2.3e-22 111.7 88 65.9
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 9.6e-21 106.3 107 54.2
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-18 99.4 62 71.0
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 1.5e-18 99.0 56 78.6
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 5.8e-18 97.1 97 51.5
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-17 95.9 62 69.4
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 2.2e-17 95.1 49 91.8
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 8.4e-17 93.2 69 60.9
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 7.1e-16 90.1 96 50.0
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 9.3e-16 89.7 126 42.1
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 6.0e-15 87.0 57 73.7
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 1.3e-14 85.9 77 54.5
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 2.3e-14 85.1 74 52.7
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 5.1e-14 84.0 55 61.8
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 5.1e-14 84.0 74 51.4
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 4.8e-12 77.4 52 67.3
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 6.3e-12 77.0 62 59.7
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 6.3e-12 77.0 195 32.8
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 1.8e-11 75.5 55 60.0
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 4.1e-11 74.3 77 50.6
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 4.5e-10 70.9 142 33.8
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 1.0e-09 69.7 50 66.0
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 1.0e-09 69.7 50 66.0
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 3.8e-09 67.8 97 47.4
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-08 66.2 68 50.0
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-08 66.2 39 71.8
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 1.9e-08 65.5 36 77.8
SHI50318 Sapria himalayana HOM05D003729 ORTHO05D004384 5.5e-08 63.9 172 34.3
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 4.6e-07 60.8 193 30.6
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 3.9e-06 57.8 130 34.6


User provided reference genes

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