Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10317_v3 Cicer arietinum L. HOM05D000245 ORTHO05D021158 1.6e-34 149.1 88 100.0
Ca_10316_v3 Cicer arietinum L. HOM05D000245 ORTHO05D000020 2.3e-28 128.6 88 90.9
TPR.G33964 Trifolium pratense HOM05D000245 ORTHO05D000020 1.0e-23 113.2 87 71.3
Psat6g163880 Pisum sativum HOM05D000245 ORTHO05D000020 2.9e-23 111.7 104 76.9
Medtr1g087920 Medicago truncatula HOM05D000245 ORTHO05D000020 7.9e-21 103.6 95 64.2
Lj5g0022230 Lotus japonicus HOM05D000245 ORTHO05D000020 1.6e-18 95.9 90 65.6
VMungo0720G1171 Vigna mungo HOM05D000245 ORTHO05D000020 2.2e-18 95.5 85 62.4
Glyma.10G016500 Glycine max HOM05D000245 ORTHO05D000020 6.3e-18 94.0 89 58.4
Phvul.007G217800 Phaseolus vulgaris HOM05D000245 ORTHO05D000020 2.4e-17 92.0 84 59.5
CiPaw.07G112200 Carya illinoinensis HOM05D000245 ORTHO05D000020 6.5e-15 84.0 49 79.6
Glyma.02G016100 Glycine max HOM05D000245 ORTHO05D000020 2.5e-14 82.0 84 56.0
FAN15G3494 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.2e-13 79.7 52 73.1
FAN20G2087 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.2e-13 79.7 52 73.1
FAN27G1186 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.2e-13 79.7 52 73.1
QL12p027792 Quercus lobata HOM05D000245 ORTHO05D000020 1.6e-13 79.3 54 66.7
QL08p052215 Quercus lobata HOM05D000245 ORTHO05D021158 4.6e-13 77.8 54 66.7
Duzib133G0934 Durio zibethinus HOM05D000245 ORTHO05D000020 1.8e-12 75.9 51 76.5
Cpa.g.sc151.30 Carica papaya HOM05D000245 ORTHO05D000020 2.3e-12 75.5 48 72.9
Lalb_Chr06g0166561 Lupinus albus HOM05D000245 ORTHO05D000020 2.3e-12 75.5 82 52.4
RcHm_v2.0_Chr6g0294441 Rosa chinensis HOM05D000245 ORTHO05D000020 2.3e-12 75.5 52 69.2
FvH4_2g26080 Fragaria vesca HOM05D000245 ORTHO05D000020 3.9e-12 74.7 52 69.2
FAN24G2143 Fragaria x ananassa HOM05D000245 ORTHO05D000020 3.9e-12 74.7 52 69.2
Sabra02G0157400 Salix brachista HOM05D000245 ORTHO05D000020 3.9e-12 74.7 49 65.3
TWI14G1013 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 3.9e-12 74.7 52 69.2
Duzib138G0004 Durio zibethinus HOM05D000245 ORTHO05D000020 6.7e-12 73.9 50 72.0
Duzib138G0617 Durio zibethinus HOM05D000245 ORTHO05D000020 8.8e-12 73.6 81 49.4
Eucgr.H01085 Eucalyptus grandis HOM05D000245 ORTHO05D000020 8.8e-12 73.6 53 64.2
Manes.01G222600 Manihot esculenta HOM05D000245 ORTHO05D000020 1.1e-11 73.2 49 69.4
MELO3C017940.2 Cucumis melo HOM05D000245 ORTHO05D000020 1.5e-11 72.8 49 71.4
Dinv33076 Davidia involucrata HOM05D000245 ORTHO05D000020 1.5e-11 72.8 53 66.0
Potri.002G201600 Populus trichocarpa HOM05D000245 ORTHO05D000020 2.0e-11 72.4 49 63.3
CANSAT25G2954 Cannabis sativa HOM05D000245 ORTHO05D000020 2.5e-11 72.0 52 69.2
COL.COLO4_23306 Corchorus olitorius HOM05D000245 ORTHO05D000020 3.3e-11 71.6 86 51.2
CsaV3_4G000990 Cucumis sativus L. HOM05D000245 ORTHO05D000020 4.3e-11 71.2 49 69.4
Gorai.004G142800 Gossypium raimondii HOM05D000245 ORTHO05D000020 4.3e-11 71.2 50 72.0
Potri.014G126100 Populus trichocarpa HOM05D000245 ORTHO05D000020 5.7e-11 70.9 48 64.6
Sed0016897 Sechium edule HOM05D000245 ORTHO05D000020 5.7e-11 70.9 52 65.4
Haze_04979 Corylus avellana HOM05D000245 ORTHO05D000020 7.4e-11 70.5 45 71.1
PGR119G0257 Punica granatum HOM05D000245 ORTHO05D000020 7.4e-11 70.5 48 70.8
Cfa005868 Carpinus fangiana HOM05D000245 ORTHO05D000020 9.7e-11 70.1 45 71.1
ClCG10G011120 Citrullus lanatus HOM05D000245 ORTHO05D000020 9.7e-11 70.1 49 67.3
Gohir.D08G139100 Gossypium hirsutum HOM05D000245 ORTHO05D000020 9.7e-11 70.1 50 70.0
Thecc.01G305800 Theobroma cacao HOM05D000245 ORTHO05D000020 9.7e-11 70.1 48 70.8
Gohir.A08G118100 Gossypium hirsutum HOM05D000245 ORTHO05D000020 2.2e-10 68.9 50 68.0
Oeu008343.1 Olea europaea HOM05D000245 ORTHO05D000020 2.2e-10 68.9 60 65.0
Prupe.8G264900 Prunus persica HOM05D000245 ORTHO05D000020 3.7e-10 68.2 52 67.3
THA.LOC104817479 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 3.7e-10 68.2 50 66.0
THA.LOC104804723 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 8.2e-10 67.0 50 66.0
THA.LOC104814747 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 8.2e-10 67.0 50 66.0
THA.LOC104827676 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 8.2e-10 67.0 50 66.0
Ciclev10021059m.g Citrus clementina HOM05D000245 ORTHO05D000020 1.1e-09 66.6 56 58.9
Gohir.D08G051700 Gossypium hirsutum HOM05D000245 ORTHO05D000020 1.1e-09 66.6 50 64.0
Gorai.004G051600 Gossypium raimondii HOM05D000245 ORTHO05D000020 1.1e-09 66.6 50 64.0
Oeu008345.1 Olea europaea HOM05D000245 ORTHO05D000020 1.1e-09 66.6 60 63.3
MBI18_g21797_MAGBIO Magnolia biondii HOM05D000245 ORTHO05D000020 1.8e-09 65.9 52 61.5
Migut.D00130 Erythranthe guttata HOM05D000245 ORTHO05D000020 2.4e-09 65.5 52 61.5
MSTRG.21648 Avicennia marina HOM05D000245 ORTHO05D000020 4.1e-09 64.7 55 60.0
TAR362G0701 Trochodendron aralioides HOM05D000245 ORTHO05D000020 4.1e-09 64.7 53 62.3
EL10Ac7g17571 Beta vulgaris HOM05D000245 ORTHO05D000020 5.3e-09 64.3 52 59.6
THA.LOC104802181 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 5.3e-09 64.3 53 60.4
MSTRG.21649 Avicennia marina HOM05D000245 ORTHO05D000020 6.9e-09 63.9 51 64.7
TAR633G0380 Trochodendron aralioides HOM05D000245 ORTHO05D000020 6.9e-09 63.9 52 63.5
Gohir.A08G041600 Gossypium hirsutum HOM05D000245 ORTHO05D000020 9.1e-09 63.5 50 60.0
MD11G1306500 Malus domestica HOM05D000245 ORTHO05D000020 1.2e-08 63.2 55 63.6
Lj1C22T12 Lonicera japonica HOM05D000245 ORTHO05D000020 1.5e-08 62.8 55 58.2
Lj1g0007199 Lotus japonicus HOM05D000245 ORTHO05D000020 1.5e-08 62.8 52 55.8
Sc17g0003030 Simmondsia chinensis HOM05D000245 ORTHO05D000020 1.5e-08 62.8 52 59.6
Thecc.01G305200 Theobroma cacao HOM05D000245 ORTHO05D000020 1.5e-08 62.8 81 42.0
Actinidia21434 Actinidia chinensis HOM05D000245 ORTHO05D000020 2.0e-08 62.4 54 59.3
Aa31LG1G28850 Aethionema arabicum HOM05D000245 ORTHO05D000020 2.0e-08 62.4 48 64.6
BcaB06g29442 Brassica carinata HOM05D000245 ORTHO05D000020 2.0e-08 62.4 46 60.9
CiPaw.08G093000 Carya illinoinensis HOM05D000245 ORTHO05D000020 2.0e-08 62.4 48 62.5
BraSC79t46687Z Brassica rapa HOM05D000245 ORTHO05D000020 2.6e-08 62.0 46 63.0
COL.COLO4_23308 Corchorus olitorius HOM05D000245 ORTHO05D000020 3.4e-08 61.6 48 58.3
Nitab4.5_0000116g0330 Nicotiana tabacum HOM05D000245 ORTHO05D000020 3.4e-08 61.6 57 56.1
Thecc.01G305400 Theobroma cacao HOM05D000245 ORTHO05D000020 3.4e-08 61.6 81 40.7
MSTRG.18135 Avicennia marina HOM05D000245 ORTHO05D000020 4.5e-08 61.2 52 57.7
A04p34970 Brassica napus HOM05D000245 ORTHO05D000020 4.5e-08 61.2 51 54.9
Hma1.2p1_0494F.1_g165440 Hydrangea macrophylla HOM05D000245 ORTHO05D000020 4.5e-08 61.2 49 61.2
Dinv02023 Davidia involucrata HOM05D000245 ORTHO05D021158 5.9e-08 60.8 54 57.4
Dinv10040 Davidia involucrata HOM05D000245 ORTHO05D000020 5.9e-08 60.8 54 57.4
Dinv19668 Davidia involucrata HOM05D000245 ORTHO05D000020 5.9e-08 60.8 54 57.4
vmacro15137 Vaccinium macrocarpon HOM05D000245 ORTHO05D000020 5.9e-08 60.8 97 40.2
Ah.15g093020 Amaranthus hybridus HOM05D000245 ORTHO05D000020 7.7e-08 60.5 56 55.4
BcaC02g06980 Brassica carinata HOM05D000245 ORTHO05D000020 7.7e-08 60.5 46 60.9
C04p72870 Brassica napus HOM05D000245 ORTHO05D000020 7.7e-08 60.5 46 60.9
Rhsim01G0287500 Rhododendron simsii HOM05D000245 ORTHO05D000020 7.7e-08 60.5 52 59.6
Sopen09g030200 Solanum pennellii HOM05D000245 ORTHO05D000020 7.7e-08 60.5 57 57.9
Nitab4.5_0000803g0030 Nicotiana tabacum HOM05D000245 ORTHO05D000020 1.0e-07 60.1 57 54.4
Sp4g29470 Schrenkiella parvula HOM05D000245 ORTHO05D000020 1.0e-07 60.1 42 61.9
HanXRQChr04g0114741 Helianthus annuus HOM05D000245 ORTHO05D000020 1.3e-07 59.7 50 58.0
AUR62025525 Chenopodium quinoa HOM05D000245 ORTHO05D000020 1.7e-07 59.3 60 53.3
Atru.chr5.1089 Acer truncatum HOM05D000245 ORTHO05D000020 2.2e-07 58.9 52 51.9
Ah.03g147330 Amaranthus hybridus HOM05D000245 ORTHO05D021158 2.2e-07 58.9 52 57.7
CSS0031448 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 2.2e-07 58.9 55 56.4
AUR62043487 Chenopodium quinoa HOM05D000245 ORTHO05D000020 2.2e-07 58.9 56 55.4
PSO407G0293 Papaver somniferum HOM05D000245 ORTHO05D000020 2.2e-07 58.9 60 58.3
GSVIVG01028050001 Vitis vinifera HOM05D000245 ORTHO05D000020 2.2e-07 58.9 59 52.5
arahy.Tifrunner.gnm1.ann1.DRB5KP Arachis hypogaea HOM05D000245 ORTHO05D000020 2.9e-07 58.5 61 50.8
BolC4t28768H Brassica oleracea HOM05D000245 ORTHO05D000020 2.9e-07 58.5 46 58.7
CARHR142930 Cardamine hirsuta HOM05D000245 ORTHO05D000020 2.9e-07 58.5 72 43.1
DCAR_018316 Daucus carota HOM05D000245 ORTHO05D000020 2.9e-07 58.5 52 59.6
Peaxi162Scf00001g00352 Petunia axillaris HOM05D000245 ORTHO05D000020 2.9e-07 58.5 56 55.4
Hund05450 Selenicereus undatus HOM05D000245 ORTHO05D000020 2.9e-07 58.5 52 53.8
Solyc09g075420.3 Solanum lycopersicum HOM05D000245 ORTHO05D000020 2.9e-07 58.5 57 56.1
PGSC0003DMG400031795 Solanum tuberosum HOM05D000245 ORTHO05D000020 2.9e-07 58.5 57 56.1
Lalb_Chr21g0309321 Lupinus albus HOM05D000245 ORTHO05D000020 3.8e-07 58.2 53 54.7
Nn4g25739 Nelumbo nucifera HOM05D000245 ORTHO05D000020 3.8e-07 58.2 54 55.6
Ah.08g213540 Amaranthus hybridus HOM05D001493 ORTHO05D000020 5.0e-07 57.8 58 55.2
arahy.Tifrunner.gnm1.ann1.GP7L65 Arachis hypogaea HOM05D000245 ORTHO05D000020 5.0e-07 57.8 59 50.8
unitig_60.g25583 Utricularia gibba HOM05D000245 ORTHO05D000020 5.0e-07 57.8 51 56.9
AUR62008711 Chenopodium quinoa HOM05D000245 ORTHO05D000020 6.5e-07 57.4 56 53.6
Actinidia25820 Actinidia chinensis HOM05D000245 ORTHO05D000020 8.5e-07 57.0 53 54.7
HanXRQChr06g0167701 Helianthus annuus HOM05D000245 ORTHO05D000020 8.5e-07 57.0 53 54.7
CSS0035247 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 1.1e-06 56.6 53 56.6
Actinidia20003 Actinidia chinensis HOM05D000245 ORTHO05D021158 1.9e-06 55.8 54 51.9
Lsat_1_v5_gn_8_164520 Lactuca sativa HOM05D000245 ORTHO05D000020 1.9e-06 55.8 51 52.9
CAN.G862.63 Capsicum annuum HOM05D000245 ORTHO05D000020 2.5e-06 55.5 89 40.4
ECA236G1351 Erigeron canadensis HOM05D000245 ORTHO05D000020 2.5e-06 55.5 54 50.0
DCAR_005784 Daucus carota HOM05D000245 ORTHO05D000020 3.2e-06 55.1 51 49.0
Actinidia21025 Actinidia chinensis HOM05D000245 ORTHO05D000020 4.2e-06 54.7 53 52.8
PSO170G1965 Papaver somniferum HOM05D000245 ORTHO05D000020 4.2e-06 54.7 57 54.4
Ah.02g117140 Amaranthus hybridus HOM05D000245 ORTHO05D021158 7.2e-06 53.9 52 53.8
Cc01_g21090 Coffea canephora HOM05D000245 ORTHO05D000020 7.2e-06 53.9 54 51.9


User provided reference genes

Program Settings