Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_10032_v3 Cicer arietinum L. HOM05D001494 ORTHO05D001364 6.4e-55 217.6 149 100.0
Medtr1g080590 Medicago truncatula HOM05D001494 ORTHO05D001364 1.4e-41 173.3 152 82.2
TPR.G26642 Trifolium pratense HOM05D001494 ORTHO05D001364 6.6e-36 154.5 153 80.4
Phvul.007G189200 Phaseolus vulgaris HOM05D001494 ORTHO05D001364 2.1e-34 149.4 156 59.6
VMungo0720G1367 Vigna mungo HOM05D001494 ORTHO05D001364 6.8e-33 144.4 156 57.7
Glyma.10G164100 Glycine max HOM05D001494 ORTHO05D001364 3.2e-30 135.6 158 57.0
Glyma.20G226500 Glycine max HOM05D001494 ORTHO05D001364 3.2e-30 135.6 158 57.0
Haze_04387 Corylus avellana HOM05D001494 ORTHO05D001364 6.0e-29 131.3 162 53.1
Cfa006389 Carpinus fangiana HOM05D001494 ORTHO05D001364 1.3e-28 130.2 162 52.5
Atru.chr2.881 Acer truncatum HOM05D001494 ORTHO05D001364 8.7e-28 127.5 162 53.1
Ciclev10022144m.g Citrus clementina HOM05D001494 ORTHO05D001364 1.1e-27 127.1 161 53.4
Psat0s368g0160 Pisum sativum HOM05D001494 ORTHO05D001364 1.5e-27 126.7 149 65.8
Gorai.007G279600 Gossypium raimondii HOM05D001494 ORTHO05D001364 3.3e-27 125.6 167 53.3
Lalb_Chr06g0168171 Lupinus albus HOM05D001494 ORTHO05D001364 3.3e-27 125.6 158 53.2
Manes.08G136900 Manihot esculenta HOM05D001494 ORTHO05D001364 7.3e-27 124.4 158 53.2
QL03p028987 Quercus lobata HOM05D001494 ORTHO05D001364 7.3e-27 124.4 163 51.5
Lj1g0018088 Lotus japonicus HOM05D001494 ORTHO05D001364 1.2e-26 123.6 164 69.5
Duzib106G1326 Durio zibethinus HOM05D001494 ORTHO05D001364 2.1e-26 122.9 165 50.9
Hma1.2p1_0345F.1_g131270 Hydrangea macrophylla HOM05D001494 ORTHO05D001364 2.1e-26 122.9 159 50.9
MD12G1244500 Malus domestica HOM05D001494 ORTHO05D001364 1.1e-25 120.6 159 50.9
TWI56G0132 Tripterygium wilfordii HOM05D001494 ORTHO05D001364 1.1e-25 120.6 161 51.6
TWI56G1137 Tripterygium wilfordii HOM05D001494 ORTHO05D001364 1.1e-25 120.6 161 51.6
MD04G1227900 Malus domestica HOM05D001494 ORTHO05D001364 6.9e-25 117.9 159 50.3
Thecc.05G277400 Theobroma cacao HOM05D001494 ORTHO05D001364 2.6e-24 115.9 164 48.8
TAR633G0935 Trochodendron aralioides HOM05D001494 ORTHO05D001364 4.4e-24 115.2 165 47.9
TAR633G1765 Trochodendron aralioides HOM05D001494 ORTHO05D001364 4.4e-24 115.2 165 47.9
COL.COLO4_15409 Corchorus olitorius HOM05D001494 ORTHO05D001364 5.8e-24 114.8 154 50.0
Lalb_Chr06g0171791 Lupinus albus HOM05D001494 ORTHO05D001364 9.9e-24 114.0 157 50.3
Glyma.19G246600 Glycine max HOM05D001494 ORTHO05D001364 4.9e-23 111.7 153 52.3
Potri.013G043700 Populus trichocarpa HOM05D001494 ORTHO05D001364 4.9e-23 111.7 161 49.1
Cc02_g09130 Coffea canephora HOM05D001494 ORTHO05D001364 8.4e-23 110.9 166 48.2
FvH4_6g02460 Fragaria vesca HOM05D001494 ORTHO05D001364 1.4e-22 110.2 155 50.3
FAN02G4133 Fragaria x ananassa HOM05D001494 ORTHO05D001364 1.4e-22 110.2 155 50.3
FAN05G1638 Fragaria x ananassa HOM05D001494 ORTHO05D001364 1.4e-22 110.2 155 50.3
FAN05G3907 Fragaria x ananassa HOM05D001494 ORTHO05D001364 1.4e-22 110.2 155 50.3
FAN09G0085 Fragaria x ananassa HOM05D001494 ORTHO05D001364 1.4e-22 110.2 155 50.3
FAN14G1685 Fragaria x ananassa HOM05D001494 ORTHO05D001364 1.4e-22 110.2 155 50.3
Prupe.6G346900 Prunus persica HOM05D001494 ORTHO05D001364 2.4e-22 109.4 159 49.1
Lalb_Chr21g0311081 Lupinus albus HOM05D001494 ORTHO05D001364 4.2e-22 108.6 157 49.7
Sabra19G0017000 Salix brachista HOM05D001494 ORTHO05D001364 4.2e-22 108.6 160 48.1
Sabra19G0026200 Salix brachista HOM05D001494 ORTHO05D001364 4.2e-22 108.6 160 48.1
Cpa.g.sc162.7 Carica papaya HOM05D001494 ORTHO05D001364 5.4e-22 108.2 166 48.8
Manes.09G150200 Manihot esculenta HOM05D001494 ORTHO05D001364 5.4e-22 108.2 158 48.7
CSS0050322 Camellia sinensis var. sinensis HOM05D001494 ORTHO05D001364 9.3e-22 107.5 161 49.1
RcHm_v2.0_Chr3g0450341 Rosa chinensis HOM05D001494 ORTHO05D001364 9.3e-22 107.5 156 50.6
Sabra13G0040500 Salix brachista HOM05D001494 ORTHO05D001364 9.3e-22 107.5 162 48.8
FAN14G4019 Fragaria x ananassa HOM05D001494 ORTHO05D001364 1.2e-21 107.1 156 49.4
MELO3C004407.2 Cucumis melo HOM05D001494 ORTHO05D001364 1.6e-21 106.7 163 47.2
Duzib177G0505 Durio zibethinus HOM05D001494 ORTHO05D001364 1.6e-21 106.7 164 54.9
Potri.019G013100 Populus trichocarpa HOM05D001494 ORTHO05D001364 1.6e-21 106.7 159 47.8
ClCG02G016890 Citrullus lanatus HOM05D001494 ORTHO05D001364 2.1e-21 106.3 162 45.7
Gohir.A11G250400 Gossypium hirsutum HOM05D001494 ORTHO05D001364 2.1e-21 106.3 168 49.4
MBI04_g10916_MAGBIO Magnolia biondii HOM05D001494 ORTHO05D001364 2.7e-21 105.9 160 46.2
Peaxi162Scf00135g01012 Petunia axillaris HOM05D001494 ORTHO05D001364 2.7e-21 105.9 158 50.0
Oeu031436.1 Olea europaea HOM05D001494 ORTHO05D001364 3.5e-21 105.5 161 47.2
CSS0035099 Camellia sinensis var. sinensis HOM05D001494 ORTHO05D001364 6.0e-21 104.8 161 48.4
Gohir.D11G261100 Gossypium hirsutum HOM05D001494 ORTHO05D001364 6.0e-21 104.8 167 48.5
TAR636G3277 Trochodendron aralioides HOM05D001494 ORTHO05D001364 6.0e-21 104.8 165 45.5
CiPaw.08G119400 Carya illinoinensis HOM05D001494 ORTHO05D001364 2.3e-20 102.8 164 44.5
Aqoxy5G00296 Aquilegia oxysepala HOM05D001494 ORTHO05D001364 3.9e-20 102.1 155 47.7
CiPaw.07G070300 Carya illinoinensis HOM05D001494 ORTHO05D001364 3.9e-20 102.1 165 46.1
CsaV3_2G003880 Cucumis sativus L. HOM05D001494 ORTHO05D001364 3.9e-20 102.1 163 46.0
TAR406G0006 Trochodendron aralioides HOM05D001494 ORTHO05D001364 5.1e-20 101.7 160 44.4
CANSAT54G2344 Cannabis sativa HOM05D001494 ORTHO05D001364 6.6e-20 101.3 160 45.6
Dinv30122 Davidia involucrata HOM05D001494 ORTHO05D001364 6.6e-20 101.3 165 44.2
MSTRG.9010 Avicennia marina HOM05D001494 ORTHO05D001364 1.5e-19 100.1 166 46.4
Actinidia03298 Actinidia chinensis HOM05D001494 ORTHO05D001364 4.3e-19 98.6 162 46.3
Oeu033257.1 Olea europaea HOM05D001494 ORTHO05D001364 7.3e-19 97.8 161 46.6
EL10Ac4g09046 Beta vulgaris HOM05D001494 ORTHO05D001364 3.6e-18 95.5 155 47.7
Dinv05727 Davidia involucrata HOM05D001494 ORTHO05D001364 3.6e-18 95.5 156 44.9
Nn3g19574 Nelumbo nucifera HOM05D001494 ORTHO05D001364 3.6e-18 95.5 165 44.8
HanXRQChr08g0217191 Helianthus annuus HOM05D001494 ORTHO05D001364 6.2e-18 94.7 167 61.7
Sed0021193 Sechium edule HOM05D001494 ORTHO05D001364 4.0e-17 92.0 163 44.8
CAN.G1256.2 Capsicum annuum HOM05D001494 ORTHO05D001364 6.9e-17 91.3 161 61.5
MBI11_g40181_MAGBIO Magnolia biondii HOM05D001494 ORTHO05D001364 6.9e-17 91.3 163 44.8
Ah.06g192020 Amaranthus hybridus HOM05D001494 ORTHO05D001364 9.0e-17 90.9 157 47.1
Glyma.03G249000 Glycine max HOM05D001494 ORTHO05D001364 9.0e-17 90.9 166 44.6
Nitab4.5_0007901g0050 Nicotiana tabacum HOM05D001494 ORTHO05D001364 1.2e-16 90.5 160 60.6
Phvul.006G103700 Phaseolus vulgaris HOM05D001494 ORTHO05D001364 1.5e-16 90.1 158 43.0
Gorai.004G248600 Gossypium raimondii HOM05D001494 ORTHO05D001364 7.6e-16 87.8 134 46.3
Psat0s3277g0080 Pisum sativum HOM05D001494 ORTHO05D001364 7.6e-16 87.8 110 65.5
Gorai.013G186300 Gossypium raimondii HOM05D001494 ORTHO05D001364 9.9e-16 87.4 152 45.4
Gohir.D13G174400 Gossypium hirsutum HOM05D001494 ORTHO05D001364 2.9e-15 85.9 152 45.4
Gohir.A13G169000 Gossypium hirsutum HOM05D001494 ORTHO05D001364 3.8e-15 85.5 152 44.7
VMungo0540G0407 Vigna mungo HOM05D001494 ORTHO05D001364 3.8e-15 85.5 158 41.8
GSVIVG01036262001 Vitis vinifera HOM05D001494 ORTHO05D001364 3.8e-15 85.5 156 41.7
PSO832G0149 Papaver somniferum HOM05D001494 ORTHO05D001364 4.9e-15 85.1 164 42.7
TWI12G0628 Tripterygium wilfordii HOM05D001494 ORTHO05D001364 4.9e-15 85.1 161 42.9
Lj5g0004761 Lotus japonicus HOM05D001494 ORTHO05D001364 6.4e-15 84.7 157 59.9
THA.LOC104802838 Tarenaya hassleriana HOM05D001494 ORTHO05D001364 6.4e-15 84.7 152 48.0
Nitab4.5_0000930g0090 Nicotiana tabacum HOM05D001494 ORTHO05D001364 1.9e-14 83.2 87 64.4
Nitab4.5_0002640g0040 Nicotiana tabacum HOM05D001494 ORTHO05D001364 1.9e-14 83.2 160 59.4
Hund28885 Selenicereus undatus HOM05D001494 ORTHO05D001364 1.9e-14 83.2 163 44.2
Hund28886 Selenicereus undatus HOM05D001494 ORTHO05D001364 1.9e-14 83.2 163 44.2
GSVIVG01028287001 Vitis vinifera HOM05D001494 ORTHO05D001364 4.2e-14 82.0 160 42.5
CDE06G0532 Ceratophyllum demersum HOM05D001494 ORTHO05D001364 5.4e-14 81.6 156 40.4
AUR62004889 Chenopodium quinoa HOM05D001494 ORTHO05D001364 7.1e-14 81.3 157 45.9
CDE03G0506 Ceratophyllum demersum HOM05D001494 ORTHO05D001364 9.3e-14 80.9 156 39.1
Peaxi162Scf00120g00067 Petunia axillaris HOM05D001494 ORTHO05D001364 1.2e-13 80.5 161 59.6
HanXRQChr14g0455321 Helianthus annuus HOM05D001494 ORTHO05D001364 1.6e-13 80.1 159 57.2
ECA233G0782 Erigeron canadensis HOM05D001494 ORTHO05D001364 2.1e-13 79.7 167 58.7
PSO210G4488 Papaver somniferum HOM05D001494 ORTHO05D001364 2.1e-13 79.7 165 41.2
PGSC0003DMG400000988 Solanum tuberosum HOM05D001494 ORTHO05D001364 3.5e-13 79.0 166 57.8
Eucgr.B02127 Eucalyptus grandis HOM05D001494 ORTHO05D001364 4.6e-13 78.6 152 40.1
SEGI_29100 Sequoiadendron giganteum HOM05D001494 ORTHO05D001364 7.9e-13 77.8 178 42.1
vmacro20007 Vaccinium macrocarpon HOM05D001494 ORTHO05D001364 1.0e-12 77.4 159 47.8
AUR62001062 Chenopodium quinoa HOM05D008025 ORTHO05D001364 1.8e-12 76.6 158 48.7
HPP92_010441 Vanilla planifolia HOM05D001494 ORTHO05D001364 1.8e-12 76.6 148 41.9
ATR1125G089 Amborella trichopoda HOM05D001494 ORTHO05D001364 3.9e-12 75.5 187 38.0
CAN.G186.69 Capsicum annuum HOM05D001494 ORTHO05D001364 5.1e-12 75.1 168 60.1
BcaC04g23724 Brassica carinata HOM05D001494 ORTHO05D001364 6.7e-12 74.7 164 57.3
C09p05340 Brassica napus HOM05D001494 ORTHO05D001364 6.7e-12 74.7 164 57.3
BolC9t53461H Brassica oleracea HOM05D001494 ORTHO05D001364 1.5e-11 73.6 164 56.1
THA.LOC104799252 Tarenaya hassleriana HOM05D001494 ORTHO05D001364 1.5e-11 73.6 162 44.4
SHI18467 Sapria himalayana HOM05D001494 ORTHO05D001364 3.3e-11 72.4 161 41.6
CDE04G0014 Ceratophyllum demersum HOM05D001494 ORTHO05D001364 9.6e-11 70.9 157 40.1
Eucgr.H04262 Eucalyptus grandis HOM05D001494 ORTHO05D001364 9.6e-11 70.9 159 40.9
TAR365G1012 Trochodendron aralioides HOM05D001494 ORTHO05D001364 9.6e-11 70.9 174 36.2
CDE07G0517 Ceratophyllum demersum HOM05D001494 ORTHO05D001364 2.8e-10 69.3 157 39.5
Gohir.D08G233900 Gossypium hirsutum HOM05D001494 ORTHO05D001364 3.7e-10 68.9 135 43.7
Nitab4.5_0003799g0020 Nicotiana tabacum HOM05D001494 ORTHO05D001364 6.2e-10 68.2 169 54.4
MBI06_g06410_MAGBIO Magnolia biondii HOM05D001494 ORTHO05D001364 1.1e-09 67.4 129 38.8
Gohir.A08G216900 Gossypium hirsutum HOM05D001494 ORTHO05D001364 1.8e-09 66.6 134 41.8
arahy.Tifrunner.gnm1.ann1.L225S3 Arachis hypogaea HOM05D001494 ORTHO05D001364 2.4e-09 66.2 131 62.6
Sopen04g004950 Solanum pennellii HOM05D001494 ORTHO05D001364 3.1e-09 65.9 158 57.6
PGSC0003DMG401025427 Solanum tuberosum HOM05D001494 ORTHO05D001364 3.1e-09 65.9 158 57.6
Aa31LG11G8670 Aethionema arabicum HOM05D001494 ORTHO05D001364 4.0e-09 65.5 164 55.5
SEGI_30560 Sequoiadendron giganteum HOM05D001494 ORTHO05D001364 4.0e-09 65.5 198 45.5
unitig_748.g8686 Utricularia gibba HOM05D001494 ORTHO05D001364 5.3e-09 65.1 149 39.6
CSS0037209 Camellia sinensis var. sinensis HOM05D001494 ORTHO05D001364 6.9e-09 64.7 153 37.9
arahy.Tifrunner.gnm1.ann1.71F8WW Arachis hypogaea HOM05D001494 ORTHO05D001364 1.5e-08 63.5 165 49.1
BcaB04g19626 Brassica carinata HOM05D001494 ORTHO05D001364 2.0e-08 63.2 167 57.5
Lj2C38G3 Lonicera japonica HOM05D001494 ORTHO05D001364 2.0e-08 63.2 160 56.9
Solyc04g009820.3 Solanum lycopersicum HOM05D001494 ORTHO05D001364 2.0e-08 63.2 158 58.2
HanXRQChr07g0200601 Helianthus annuus HOM05D001494 ORTHO05D001364 5.8e-08 61.6 159 58.5
BcaC03g17754 Brassica carinata HOM05D001494 ORTHO05D001364 1.7e-07 60.1 167 55.1
DCAR_028383 Daucus carota HOM05D001494 ORTHO05D001364 1.7e-07 60.1 97 67.0
BcaNung02101 Brassica carinata HOM05D001494 ORTHO05D001364 2.2e-07 59.7 165 56.4
A06p37990 Brassica napus HOM05D001494 ORTHO05D001364 2.2e-07 59.7 165 56.4
C07p40240 Brassica napus HOM05D001494 ORTHO05D001364 2.2e-07 59.7 165 56.4
BolC7t44559H Brassica oleracea HOM05D001494 ORTHO05D001364 2.2e-07 59.7 165 56.4
BraA06t26715Z Brassica rapa HOM05D001494 ORTHO05D001364 2.2e-07 59.7 165 56.4
Medtr7g115410 Medicago truncatula HOM05D001494 ORTHO05D001364 2.9e-07 59.3 170 54.7
Migut.F00821 Erythranthe guttata HOM05D001494 ORTHO05D001364 3.8e-07 58.9 171 40.4
MBI07_g07332_MAGBIO Magnolia biondii HOM05D002532 ORTHO05D006707 3.8e-07 58.9 83 44.6
CARHR185230 Cardamine hirsuta HOM05D001494 ORTHO05D001364 8.4e-07 57.8 168 54.8
ECA238G3537 Erigeron canadensis HOM05D001494 ORTHO05D001364 1.4e-06 57.0 163 55.8
Medtr3g097190 Medicago truncatula HOM05D001494 ORTHO05D000039 1.9e-06 56.6 34 79.4
Rhsim05G0176000 Rhododendron simsii HOM05D001494 ORTHO05D001364 1.9e-06 56.6 159 39.0
Sc09g0004090 Simmondsia chinensis HOM05D001494 ORTHO05D001364 2.4e-06 56.2 154 37.7
AL6G40650 Arabidopsis lyrata HOM05D001494 ORTHO05D001364 3.2e-06 55.8 168 54.8
C02p57670 Brassica napus HOM05D001494 ORTHO05D001364 3.2e-06 55.8 168 54.8
BolC2t11839H Brassica oleracea HOM05D001494 ORTHO05D001364 3.2e-06 55.8 168 54.8
Solyc11g006230.3 Solanum lycopersicum HOM05D001494 ORTHO05D001364 3.2e-06 55.8 155 53.5
AT5G28640 Arabidopsis thaliana HOM05D001494 ORTHO05D001364 4.2e-06 55.5 169 54.4
Carub.0006s2591 Capsella rubella HOM05D001494 ORTHO05D001364 4.2e-06 55.5 170 54.1
Dinv32635 Davidia involucrata HOM05D001494 ORTHO05D001364 4.2e-06 55.5 170 40.6
A09p04940 Brassica napus HOM05D001494 ORTHO05D001364 9.3e-06 54.3 164 56.7
BraA09t36133Z Brassica rapa HOM05D001494 ORTHO05D001364 9.3e-06 54.3 164 56.7


User provided reference genes

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