Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 3.6e-131 471.9 288 100.0
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 3.3e-108 395.6 256 88.3
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 8.1e-107 391.0 264 87.1
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 3.4e-105 385.6 259 86.9
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 4.6e-102 375.2 267 83.5
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 4.6e-102 375.2 267 83.5
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 3.0e-101 372.5 263 84.0
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 1.5e-100 370.2 263 83.7
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 4.8e-99 365.2 268 82.5
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 3.1e-98 362.5 263 83.3
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 3.9e-93 345.5 266 77.8
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 4.5e-89 332.0 265 77.0
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 9.3e-87 324.3 260 75.4
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 1.2e-86 323.9 261 75.5
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 2.3e-85 319.7 258 74.8
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.3e-85 319.7 259 74.5
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 2.3e-85 319.7 262 74.0
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 3.0e-85 319.3 257 73.9
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 3.0e-85 319.3 256 74.2
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 1.5e-84 317.0 259 74.5
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 1.9e-84 316.6 260 73.8
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.5e-84 316.2 268 72.0
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 3.3e-84 315.8 260 73.5
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 3.3e-84 315.8 258 73.6
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 9.6e-84 314.3 256 73.8
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.8e-83 312.8 268 71.3
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 2.8e-83 312.8 257 71.2
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 2.8e-83 312.8 265 72.8
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 8.2e-83 311.2 256 74.2
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 1.1e-82 310.8 259 73.0
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 1.8e-82 310.1 260 73.5
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 2.4e-82 309.7 258 73.3
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 4.1e-82 308.9 258 72.1
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 9.0e-82 307.8 267 71.2
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 1.5e-81 307.0 265 70.2
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.5e-81 307.0 264 71.2
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 2.0e-81 306.6 264 71.6
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 2.0e-81 306.6 261 72.4
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 3.4e-81 305.8 259 70.7
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 3.4e-81 305.8 268 68.7
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 5.9e-81 305.1 256 70.3
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 2.2e-80 303.1 258 70.5
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 3.8e-80 302.4 296 65.2
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 1.4e-79 300.4 263 70.0
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 4.2e-79 298.9 258 69.4
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 4.2e-79 298.9 256 70.7
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 3.6e-78 295.8 283 66.4
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 4.6e-78 295.4 257 71.2
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.8e-77 293.5 258 68.2
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 6.7e-77 291.6 266 68.8
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 1.1e-76 290.8 264 67.0
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.1e-76 290.8 256 68.8
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 4.3e-76 288.9 266 66.9
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 5.3e-74 282.0 261 67.0
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 5.3e-74 282.0 261 66.7
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 2.0e-73 280.0 258 67.8
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.0e-73 280.0 258 67.1
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 2.9e-72 276.2 237 72.6
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 8.5e-72 274.6 258 65.9
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 9.4e-71 271.2 263 63.1
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.1e-70 270.0 212 71.7
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 3.0e-69 266.2 269 62.5
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 8.8e-69 264.6 257 62.6
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.5e-68 263.8 257 63.0
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.5e-68 263.8 257 63.0
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 1.5e-68 263.8 259 63.3
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 2.0e-68 263.5 257 63.4
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 4.4e-68 262.3 257 63.0
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 9.7e-68 261.2 261 63.6
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 2.2e-67 260.0 263 60.8
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 2.2e-67 260.0 260 63.1
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 2.8e-67 259.6 263 62.7
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 6.3e-67 258.5 256 62.9
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 1.4e-66 257.3 271 60.9
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 4.1e-66 255.8 258 61.2
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 5.3e-66 255.4 267 62.2
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.7e-64 250.4 257 60.7
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 1.7e-64 250.4 257 59.9
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 3.8e-64 249.2 257 61.1
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 4.2e-63 245.7 207 68.6
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 9.4e-63 244.6 215 66.0
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.6e-62 243.8 265 59.6
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.7e-62 243.0 258 60.5
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 2.7e-62 243.0 264 59.5
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.6e-62 242.7 258 60.1
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.6e-60 236.5 255 60.8
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.7e-59 233.8 258 59.7
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 1.1e-58 231.1 262 58.0
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 7.7e-57 224.9 218 61.0
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.3e-56 224.2 219 63.5
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.7e-56 223.8 213 63.8
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 7.2e-55 218.4 258 56.6
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 1.2e-54 217.6 257 56.8
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 1.2e-54 217.6 214 63.1
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 4.7e-54 215.7 258 56.2
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.0e-53 214.5 265 58.5
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.4e-53 214.2 258 55.4
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 8.8e-53 211.5 262 55.7
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 2.6e-52 209.9 229 56.8
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 4.4e-52 209.1 257 54.9
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 4.4e-52 209.1 257 54.9
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 4.4e-52 209.1 260 53.8
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 5.7e-52 208.8 267 50.9
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 1.1e-50 204.5 228 59.2
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 1.8e-50 203.8 260 53.5
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 1.8e-50 203.8 260 53.5
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 3.1e-50 203.0 267 53.6
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 9.1e-50 201.4 206 60.2
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 9.1e-50 201.4 206 60.2
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 9.1e-50 201.4 260 53.1
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 2.7e-49 199.9 199 61.8
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 4.5e-49 199.1 269 50.9
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 1.3e-48 197.6 197 61.4
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 1.5e-47 194.1 310 44.8
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.9e-47 193.7 271 50.2
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.1e-46 190.3 243 50.6
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 2.7e-46 189.9 190 63.7
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 2.7e-46 189.9 237 54.9
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 3.6e-46 189.5 281 49.5
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 1.8e-45 187.2 209 57.4
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.5e-44 184.1 271 47.2
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.7e-43 179.5 245 48.6
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 4.1e-42 176.0 221 53.4
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 5.9e-41 172.2 221 51.1
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 2.9e-40 169.9 259 46.7
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 5.0e-40 169.1 237 49.4
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 8.5e-40 168.3 237 49.4
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 6.8e-37 158.7 124 72.6
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.6e-36 156.8 162 59.9
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 5.7e-36 155.6 260 47.7
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 1.3e-35 154.5 259 49.0
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 2.0e-33 147.1 107 77.6
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 1.8e-29 134.0 146 61.6
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 4.3e-23 112.8 92 69.6
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 3.7e-19 99.8 142 44.4
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 2.3e-16 90.5 170 38.8
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.5e-15 87.8 95 61.1
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 3.7e-11 73.2 87 51.7
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.5e-09 66.6 38 92.1
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 5.6e-07 59.3 58 67.2
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 9.5e-07 58.5 170 33.5
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 2.1e-06 57.4 208 29.3


User provided reference genes

Program Settings