Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 3.4e-55 218.0 103 100.0
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.6e-41 172.6 81 100.0
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 1.3e-38 162.9 87 86.2
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 2.2e-38 162.2 81 92.6
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 3.7e-38 161.4 87 85.1
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 6.4e-38 160.6 81 92.6
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 1.1e-37 159.8 81 90.1
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 1.1e-37 159.8 81 90.1
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 1.9e-37 159.1 81 91.4
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 3.2e-37 158.3 81 91.4
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 9.2e-37 156.8 81 88.9
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 3.5e-36 154.8 81 87.7
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 1.0e-35 153.3 81 87.7
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 3.1e-32 141.7 80 80.0
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 8.9e-32 140.2 80 78.8
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 5.8e-31 137.5 81 76.5
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 9.9e-31 136.7 80 76.2
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 9.9e-31 136.7 80 78.8
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 1.3e-30 136.3 80 78.8
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 1.7e-30 136.0 80 76.2
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 2.2e-30 135.6 80 78.8
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 2.9e-30 135.2 80 75.0
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 6.4e-30 134.0 80 76.2
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 8.3e-30 133.7 80 77.5
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 8.3e-30 133.7 80 76.2
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 1.1e-29 133.3 79 74.7
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.4e-29 132.9 79 74.7
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 1.9e-29 132.5 80 75.0
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 2.4e-29 132.1 81 72.8
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 4.1e-29 131.3 80 72.5
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 5.4e-29 131.0 81 72.8
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 9.2e-29 130.2 81 72.8
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 1.2e-28 129.8 80 71.2
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 3.5e-28 128.3 80 75.0
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 4.6e-28 127.9 80 72.5
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 6.0e-28 127.5 80 72.5
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 6.0e-28 127.5 80 72.5
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 6.0e-28 127.5 80 72.5
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 6.0e-28 127.5 80 71.2
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 6.0e-28 127.5 80 71.2
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.3e-27 126.3 80 71.2
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 1.7e-27 125.9 80 68.8
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 3.0e-27 125.2 80 70.0
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 3.0e-27 125.2 80 70.0
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 3.0e-27 125.2 80 70.0
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 3.0e-27 125.2 80 70.0
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 3.0e-27 125.2 80 70.0
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 3.9e-27 124.8 80 71.2
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 5.1e-27 124.4 79 70.9
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 5.1e-27 124.4 80 71.2
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 5.1e-27 124.4 78 70.5
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 5.1e-27 124.4 80 68.8
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 8.6e-27 123.6 78 71.8
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 8.6e-27 123.6 80 68.8
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.5e-26 122.9 80 68.8
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 1.9e-26 122.5 81 69.1
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 2.5e-26 122.1 81 67.9
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 2.5e-26 122.1 81 69.1
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 3.3e-26 121.7 81 67.9
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 4.3e-26 121.3 84 64.3
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 2.1e-25 119.0 84 63.1
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 2.1e-25 119.0 80 66.2
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 2.8e-25 118.6 80 68.8
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 2.8e-25 118.6 80 68.8
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 4.7e-25 117.9 80 65.0
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 8.1e-25 117.1 81 60.5
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 1.8e-24 115.9 80 66.2
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 1.8e-24 115.9 80 66.2
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 1.8e-24 115.9 80 66.2
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 2.4e-24 115.5 80 66.2
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 2.4e-24 115.5 80 66.2
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 2.4e-24 115.5 80 66.2
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 2.4e-24 115.5 80 67.5
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 2.4e-24 115.5 80 65.0
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 4.0e-24 114.8 80 65.0
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 4.0e-24 114.8 84 63.1
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 4.0e-24 114.8 80 66.2
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 4.0e-24 114.8 80 66.2
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 5.2e-24 114.4 80 66.2
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 5.2e-24 114.4 80 63.8
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 8.9e-24 113.6 80 67.5
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 1.2e-23 113.2 80 63.8
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 2.0e-23 112.5 80 63.8
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 2.6e-23 112.1 80 65.0
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 3.4e-23 111.7 80 62.5
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 5.8e-23 110.9 80 65.0
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 5.8e-23 110.9 80 65.0
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 5.8e-23 110.9 80 61.2
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 5.8e-23 110.9 80 61.2
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 9.9e-23 110.2 80 62.5
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 1.7e-22 109.4 80 62.5
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 2.2e-22 109.0 80 60.0
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 2.9e-22 108.6 80 61.2
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 2.9e-22 108.6 80 62.5
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 4.9e-22 107.8 80 63.8
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 6.4e-22 107.5 72 63.9
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 8.4e-22 107.1 80 62.5
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 1.4e-21 106.3 80 63.8
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 1.9e-21 105.9 80 60.0
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 3.2e-21 105.1 80 58.8
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 7.1e-21 104.0 81 61.7
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 2.1e-20 102.4 80 60.0
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 1.6e-17 92.8 80 52.5
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 4.4e-15 84.7 81 48.1
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 5.8e-15 84.3 59 62.7
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 5.8e-15 84.3 59 62.7
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 2.9e-14 82.0 79 45.6
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 3.8e-14 81.6 74 48.6
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 4.9e-14 81.3 66 53.0
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 3.2e-13 78.6 68 45.6
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 3.3e-10 68.6 67 46.3
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 2.1e-09 65.9 67 46.3
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.0e-07 59.3 32 84.4
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.0e-07 59.3 33 81.8
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 2.6e-07 58.9 31 87.1
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 3.8e-06 55.1 51 51.0


User provided reference genes

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