Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 0.0e+00 1112.1 595 100.0
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 7.6e-285 983.4 615 86.7
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 1.4e-283 979.2 650 82.8
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 3.8e-276 954.5 611 86.4
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 2.6e-248 862.1 598 79.1
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 4.4e-248 861.3 593 76.6
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 7.0e-246 854.0 592 76.5
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 1.2e-245 853.2 612 78.3
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 1.6e-245 852.8 603 79.4
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.6e-245 852.8 598 74.9
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.0e-245 852.4 612 78.3
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 9.4e-243 843.6 600 77.2
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 5.9e-237 824.3 603 75.0
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 3.0e-220 768.8 597 72.4
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 7.3e-219 764.2 599 72.0
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 8.0e-218 760.8 580 71.4
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 8.3e-215 750.7 580 72.2
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 1.4e-209 733.4 603 69.5
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 2.2e-207 726.1 603 66.0
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 1.9e-206 723.0 596 68.8
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.9e-206 723.0 580 68.1
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 1.0e-204 717.2 612 63.9
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 5.1e-204 714.9 575 67.5
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 8.6e-204 714.1 601 68.4
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.9e-203 713.0 592 65.4
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 2.5e-203 712.6 602 65.8
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.2e-202 710.3 596 65.4
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 2.1e-202 709.5 593 67.3
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.2e-200 703.7 572 66.1
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 9.3e-198 694.1 607 63.1
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 4.6e-197 691.8 593 67.5
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 7.8e-197 691.0 588 66.8
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.3e-196 690.3 604 63.9
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.7e-196 689.9 591 63.3
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.0e-196 689.1 604 63.9
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.1e-195 687.2 574 66.9
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 3.3e-195 685.6 581 66.4
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 5.6e-195 684.9 584 65.8
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 1.6e-194 683.3 583 67.6
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 4.8e-194 681.8 598 63.7
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 6.2e-194 681.4 602 63.0
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 5.3e-193 678.3 590 62.0
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 6.9e-193 677.9 605 62.3
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 9.0e-193 677.6 581 62.3
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 1.5e-192 676.8 591 63.6
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.0e-192 676.4 605 62.3
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.4e-192 675.6 538 71.2
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 5.8e-192 674.9 593 60.7
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.3e-191 673.7 609 63.9
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 1.7e-191 673.3 606 64.5
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 2.2e-191 672.9 598 63.5
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 2.2e-191 672.9 583 63.1
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 3.8e-191 672.2 601 64.2
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 6.4e-191 671.4 595 62.4
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 8.4e-191 671.0 587 63.0
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 8.4e-191 671.0 597 61.3
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 1.1e-190 670.6 588 64.3
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 1.1e-190 670.6 581 64.5
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.1e-190 670.6 587 63.0
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 2.4e-190 669.5 580 63.4
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 6.0e-189 664.8 584 63.0
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 1.7e-188 663.3 582 61.7
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 5.1e-188 661.8 593 60.9
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 1.9e-187 659.8 573 64.0
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.3e-187 659.1 582 61.2
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 9.6e-187 657.5 615 59.5
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 2.1e-186 656.4 617 62.4
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 1.1e-185 654.1 497 70.2
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 2.4e-185 652.9 582 64.6
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.2e-184 650.6 571 61.3
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 1.5e-184 650.2 577 63.8
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.6e-184 649.4 582 60.3
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 4.5e-184 648.7 582 63.7
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 5.8e-184 648.3 666 58.9
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.2e-183 646.4 496 68.3
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 3.8e-183 645.6 593 61.4
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 6.4e-183 644.8 574 64.6
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 1.1e-182 644.0 582 59.8
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 1.4e-182 643.7 584 63.2
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.4e-182 643.7 564 61.0
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 1.2e-181 640.6 598 62.4
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.2e-181 640.6 590 62.7
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 7.9e-181 637.9 604 61.6
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.8e-180 636.7 599 60.9
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.8e-180 636.7 581 60.6
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.0e-180 636.0 593 58.9
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 2.5e-179 632.9 594 59.1
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 5.6e-179 631.7 624 56.2
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 5.6e-179 631.7 548 62.0
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.3e-178 630.6 595 57.8
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 1.6e-178 630.2 582 59.5
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 2.8e-178 629.4 520 67.7
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.8e-178 629.4 608 57.7
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.7e-178 629.0 604 61.3
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 4.8e-178 628.6 597 58.3
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 6.2e-178 628.2 595 58.5
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 3.1e-177 625.9 572 60.5
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 5.3e-177 625.2 614 56.8
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 1.5e-176 623.6 607 56.7
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 2.0e-176 623.2 603 57.2
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.5e-176 622.1 618 60.0
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.0e-175 620.9 624 55.1
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 2.5e-174 616.3 603 56.9
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.2e-174 615.5 582 61.9
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 2.1e-173 613.2 592 57.8
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 2.1e-173 613.2 601 58.9
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 3.0e-172 609.4 590 59.0
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 5.1e-172 608.6 590 57.3
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 6.7e-172 608.2 602 56.5
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 8.7e-172 607.8 589 56.9
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 1.1e-171 607.4 592 57.1
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 1.5e-171 607.1 589 58.4
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 1.5e-171 607.1 589 58.6
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 3.3e-171 605.9 596 59.2
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 7.4e-171 604.7 579 58.7
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 9.6e-171 604.4 640 53.3
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 3.7e-170 602.4 589 56.9
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.8e-170 602.1 617 58.3
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 4.8e-170 602.1 663 52.0
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 3.1e-169 599.4 605 56.4
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 3.0e-164 582.8 564 59.4
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 8.7e-164 581.3 570 56.5
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 3.3e-163 579.3 568 58.6
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 3.3e-163 579.3 596 56.4
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.7e-162 575.9 449 69.3
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.7e-159 567.0 484 65.1
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 2.2e-159 566.6 546 59.9
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.9e-158 563.5 559 58.7
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 4.2e-158 562.4 587 55.5
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 2.5e-155 553.1 573 56.4
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 4.7e-149 532.3 605 51.2
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 2.2e-146 523.5 568 53.0
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.2e-146 523.5 576 53.5
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 6.3e-146 521.9 483 58.6
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 1.6e-141 507.3 463 61.3
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.0e-139 500.4 569 50.8
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 2.6e-139 500.0 590 52.0
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 2.7e-133 479.9 563 50.4
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.0e-132 476.5 367 71.7
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 4.4e-131 472.6 625 47.2
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.2e-123 448.0 577 46.4
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 9.2e-121 438.3 447 54.1
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 4.3e-118 429.5 338 66.6
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 3.9e-111 406.4 379 61.5
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 1.6e-96 357.8 315 61.6
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.5e-94 351.3 340 60.0
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 5.2e-92 342.8 634 36.0
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 1.9e-86 324.3 363 51.8
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.1e-70 271.9 269 60.6
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 3.2e-65 253.8 163 79.8
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 4.3e-62 243.4 237 61.2
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 2.4e-52 211.1 230 50.9
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 1.6e-45 188.3 138 73.2
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 2.6e-38 164.5 290 34.5
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 5.7e-30 136.7 167 51.5
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 7.4e-30 136.3 449 24.5
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 6.3e-29 133.3 219 43.4
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 4.5e-27 127.1 526 23.6
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 5.9e-27 126.7 76 78.9
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 5.0e-26 123.6 71 77.5
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 1.6e-24 118.6 71 80.3
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 2.1e-24 118.2 100 62.0
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 7.0e-20 103.2 66 83.3
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 4.7e-16 90.5 83 60.2
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 3.0e-15 87.8 72 59.7
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 5.7e-14 83.6 65 63.1
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 4.8e-13 80.5 209 30.6
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 1.7e-10 72.0 103 42.7
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 4.7e-08 63.9 35 82.9
Ca_07189_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 6.1e-08 63.5 248 27.4
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 1.8e-07 62.0 36 80.6
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 1.5e-06 58.9 58 56.9
Ca_06859_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 1.5e-06 58.9 248 26.6
arahy.Tifrunner.gnm1.ann1.5E42VB Arachis hypogaea HOM05D004045 ORTHO05D083177 3.4e-06 57.8 38 81.6
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 3.4e-06 57.8 254 29.1
unitig_899.g15441 Utricularia gibba HOM05D001818 ORTHO05D001780 7.5e-06 56.6 242 26.0


User provided reference genes

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