Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 0.0e+00 2934.4 1566 100.0
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 0.0e+00 2001.5 1616 70.9
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 0.0e+00 1951.8 1671 67.6
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 0.0e+00 1910.2 1742 65.1
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 0.0e+00 1610.9 1657 58.8
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 0.0e+00 1609.0 1660 58.7
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 0.0e+00 1606.7 1671 59.2
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 0.0e+00 1535.8 1683 56.2
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 0.0e+00 1494.6 1679 56.2
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 0.0e+00 1415.2 1678 54.3
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 0.0e+00 1197.2 1427 53.1
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 6.1e-281 971.8 1697 42.3
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 1.8e-277 960.3 1706 41.2
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 5.7e-271 938.7 1710 40.9
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 1.0e-264 917.9 1708 40.0
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 8.5e-259 898.3 1684 40.7
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 8.5e-259 898.3 1684 40.7
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 1.8e-253 880.6 1709 40.1
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 2.2e-251 873.6 1713 39.4
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 1.4e-248 864.4 1711 40.2
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 1.2e-244 851.3 1760 38.8
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 1.6e-244 850.9 1749 38.8
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.1e-242 844.7 1660 39.6
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 3.6e-241 839.7 1686 39.1
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 1.0e-240 838.2 1670 38.4
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 5.2e-240 835.9 1755 38.3
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 4.4e-239 832.8 1749 38.2
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 1.7e-238 830.9 1660 38.8
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 5.0e-235 819.3 1720 37.4
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 8.3e-230 802.0 1673 37.5
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 1.8e-229 800.8 1786 36.4
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 2.9e-227 793.5 947 51.6
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 1.2e-225 788.1 1714 38.2
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 2.1e-225 787.3 1832 35.6
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 3.1e-224 783.5 1760 36.9
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 4.4e-223 779.6 1777 36.6
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 1.7e-222 777.7 1677 37.1
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 1.7e-219 767.7 1768 37.0
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 5.6e-218 762.7 1617 38.3
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 8.1e-217 758.8 1754 35.9
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 3.4e-215 753.4 1820 35.7
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 1.1e-213 748.4 1747 35.4
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 3.2e-213 746.9 1751 36.4
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 2.7e-212 743.8 1684 36.1
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 4.3e-210 736.5 1712 35.5
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 1.2e-209 734.9 1636 36.9
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 1.4e-208 731.5 1690 35.6
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 6.8e-208 729.2 1683 35.2
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 5.8e-207 726.1 1700 35.9
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 9.9e-207 725.3 1715 35.3
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 1.7e-206 724.5 1741 35.0
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 1.0e-203 715.3 1675 34.9
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 3.0e-203 713.8 1761 35.6
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 8.9e-200 702.2 1727 35.3
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 1.2e-196 691.8 1791 34.3
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 2.1e-196 691.0 1723 35.0
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 1.9e-194 684.5 1649 34.2
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 1.9e-194 684.5 1854 33.5
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.3e-194 683.7 1804 34.5
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 1.0e-187 662.1 1653 34.5
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 3.0e-187 660.6 1747 34.3
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 2.5e-186 657.5 1646 36.1
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 9.6e-186 655.6 2083 31.5
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 2.0e-183 647.9 1647 35.0
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 6.4e-182 642.9 1618 34.7
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 6.0e-180 636.3 1636 34.4
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 1.9e-178 631.3 1755 33.2
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.3e-177 628.6 1686 33.7
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 1.3e-171 608.6 1669 31.9
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 1.9e-170 604.7 1289 37.5
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 5.7e-170 603.2 1627 34.2
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 4.1e-168 597.0 1568 34.1
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 5.3e-168 596.7 1615 33.3
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 1.1e-165 589.0 1637 33.6
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 7.9e-164 582.8 1127 37.5
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 6.3e-161 573.2 1692 33.2
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 7.7e-159 566.2 1616 33.1
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 3.4e-151 540.8 1726 31.1
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 7.7e-151 539.7 1730 31.6
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 7.4e-146 523.1 1589 32.2
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 6.3e-129 466.8 1656 30.0
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 1.6e-127 462.2 1390 31.6
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.0e-123 447.6 651 42.7
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 7.5e-122 443.4 1718 30.2
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 4.3e-117 427.6 1410 32.2
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 4.3e-117 427.6 1410 32.2
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 3.6e-116 424.5 1014 37.8
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 6.2e-108 397.1 922 37.7
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.7e-102 379.0 435 46.9
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.7e-95 355.1 763 35.3
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.1e-88 331.3 872 35.8
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 1.1e-83 316.6 339 47.8
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 1.4e-80 306.2 875 36.5
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 3.2e-80 305.1 879 35.8
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 6.0e-79 300.8 838 30.1
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 2.5e-77 295.4 926 32.0
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 2.4e-75 288.9 236 64.4
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 5.1e-70 271.2 954 27.4
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 7.6e-66 257.3 463 35.2
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 6.7e-62 244.2 1263 28.3
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 9.6e-61 240.4 1690 26.0
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 1.7e-57 229.6 784 33.5
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 4.6e-55 221.5 1662 24.1
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 7.9e-55 220.7 533 32.3
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 4.3e-53 214.9 466 41.4
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 4.8e-52 211.5 1036 25.1
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 5.3e-51 208.0 172 63.4
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.5e-50 206.5 533 30.2
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 1.9e-48 199.5 293 45.4
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.3e-46 193.4 235 47.2
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 5.7e-45 188.0 542 36.3
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.6e-44 186.4 190 52.1
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 8.2e-44 184.1 626 33.7
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 1.5e-42 179.9 191 50.8
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.5e-42 179.9 372 38.7
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.0e-42 179.5 234 44.0
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 4.5e-42 178.3 147 54.4
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 6.7e-38 164.5 259 45.6
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 7.4e-37 161.0 203 50.7
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 6.3e-36 157.9 186 47.3
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 2.9e-33 149.1 999 27.3
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 3.5e-26 125.6 428 34.1
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 6.5e-25 121.3 128 52.3
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 7.2e-24 117.9 85 63.5
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 7.2e-24 117.9 184 40.8
SMO167G0064 Selaginella moellendorffii HOM05D004493 ORTHO05D005117 2.6e-21 109.4 411 24.8
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 9.7e-21 107.5 139 41.7
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 1.7e-20 106.7 93 60.2
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 1.7e-20 106.7 661 28.6
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 3.7e-20 105.5 128 46.9
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.2e-17 96.3 220 34.1
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 2.5e-16 92.8 70 61.4
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 5.5e-16 91.7 851 25.7
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 2.3e-14 86.3 115 53.0
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 3.0e-14 85.9 62 62.9
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 5.2e-14 85.1 101 41.6
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 3.7e-12 79.0 120 36.7
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.1e-11 75.9 230 29.1
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.4e-11 75.1 70 52.9
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 5.4e-11 75.1 353 31.4
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 7.7e-10 71.2 70 51.4
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.9e-08 66.6 65 50.8
Psat4g190920 Pisum sativum HOM05D000487 ORTHO05D001267 1.9e-08 66.6 51 68.6
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 5.5e-08 65.1 66 51.5
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 3.6e-07 62.4 458 28.4
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.1e-07 61.6 94 38.3
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.8e-06 60.1 58 51.7
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 6.8e-06 58.2 56 51.8


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