Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09437_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 6.5e-76 287.3 148 100.0
Ca_01486_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.8e-62 242.7 123 100.0
Ca_14756_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.4e-41 173.3 95 96.8
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 3.7e-39 165.2 95 91.6
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 8.3e-39 164.1 95 91.6
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 3.1e-38 162.2 95 89.5
Ca_27225_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 1.0e-36 157.1 95 91.6
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 9.5e-35 150.6 95 83.2
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 6.1e-34 147.9 95 82.1
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 3.0e-33 145.6 95 82.1
Phvul.002G328600 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 8.9e-33 144.1 95 81.1
Phvul.002G328704 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 8.9e-33 144.1 95 81.1
VMungo0251G2737 Vigna mungo HOM05D002653 ORTHO05D002623 8.9e-33 144.1 95 81.1
arahy.Tifrunner.gnm1.ann1.21MRAZ Arachis hypogaea HOM05D002653 ORTHO05D002623 1.2e-32 143.7 89 83.1
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 1.2e-32 143.7 89 83.1
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 4.4e-32 141.7 95 78.9
Haze_24503 Corylus avellana HOM05D002653 ORTHO05D002623 7.0e-30 134.4 105 67.6
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 2.0e-29 132.9 95 72.6
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 2.7e-29 132.5 95 72.6
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 1.0e-28 130.6 95 72.6
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 1.3e-28 130.2 95 71.6
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 1.7e-28 129.8 93 69.9
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 6.6e-28 127.9 95 70.5
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 6.6e-28 127.9 95 70.5
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 6.6e-28 127.9 95 70.5
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 6.6e-28 127.9 95 69.5
Ciclev10010886m.g Citrus clementina HOM05D002653 ORTHO05D002623 8.6e-28 127.5 95 70.5
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 1.1e-27 127.1 94 71.3
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 1.1e-27 127.1 95 69.5
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 1.1e-27 127.1 95 70.5
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.9e-27 126.3 94 70.2
Cpa.g.sc119.2 Carica papaya HOM05D002653 ORTHO05D002623 2.5e-27 125.9 94 67.0
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 4.3e-27 125.2 95 72.6
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 5.6e-27 124.8 95 68.4
Lj4C825G3 Lonicera japonica HOM05D002653 ORTHO05D002623 5.6e-27 124.8 95 67.4
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 5.6e-27 124.8 94 69.1
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 7.3e-27 124.4 95 66.3
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 7.3e-27 124.4 95 66.3
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 7.3e-27 124.4 95 68.4
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 1.2e-26 123.6 93 68.8
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 2.1e-26 122.9 95 68.4
CSS0047039 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 2.1e-26 122.9 95 68.4
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 2.1e-26 122.9 95 69.5
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 2.1e-26 122.9 94 71.3
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 2.8e-26 122.5 95 69.5
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 2.8e-26 122.5 94 68.1
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 2.8e-26 122.5 95 66.3
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 3.6e-26 122.1 94 67.0
Gohir.D04G020351 Gossypium hirsutum HOM05D002653 ORTHO05D002623 3.6e-26 122.1 94 67.0
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 3.6e-26 122.1 94 67.0
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 3.6e-26 122.1 95 67.4
COL.COLO4_33575 Corchorus olitorius HOM05D002653 ORTHO05D002623 6.2e-26 121.3 94 67.0
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 6.2e-26 121.3 95 66.3
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 1.4e-25 120.2 95 66.3
Actinidia28837 Actinidia chinensis HOM05D002653 ORTHO05D002623 2.3e-25 119.4 95 65.3
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 2.3e-25 119.4 95 66.3
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 3.1e-25 119.0 94 63.8
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 3.1e-25 119.0 95 67.4
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 3.1e-25 119.0 95 67.4
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 3.1e-25 119.0 95 63.2
AUR62007656 Chenopodium quinoa HOM05D002653 ORTHO05D002623 4.0e-25 118.6 94 63.8
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 5.2e-25 118.2 96 66.7
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 6.8e-25 117.9 85 69.4
Sed0003631 Sechium edule HOM05D002653 ORTHO05D002623 6.8e-25 117.9 95 66.3
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 8.9e-25 117.5 95 64.2
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 1.2e-24 117.1 95 66.3
MELO3C010025.2 Cucumis melo HOM05D002653 ORTHO05D002623 1.2e-24 117.1 95 66.3
Nitab4.5_0006025g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 1.5e-24 116.7 95 63.2
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 2.0e-24 116.3 95 65.3
Sp2g22690 Schrenkiella parvula HOM05D002653 ORTHO05D002623 3.4e-24 115.5 85 67.1
Migut.L00525 Erythranthe guttata HOM05D002653 ORTHO05D002623 4.4e-24 115.2 95 63.2
Migut.L00786 Erythranthe guttata HOM05D002653 ORTHO05D002623 4.4e-24 115.2 95 63.2
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 5.8e-24 114.8 94 63.8
CARHR188760 Cardamine hirsuta HOM05D002653 ORTHO05D002623 5.8e-24 114.8 85 65.9
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 7.5e-24 114.4 94 63.8
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 7.5e-24 114.4 95 64.2
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 1.3e-23 113.6 85 65.9
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 1.3e-23 113.6 95 63.2
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 1.3e-23 113.6 85 65.9
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 1.7e-23 113.2 85 65.9
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 1.7e-23 113.2 85 65.9
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 1.7e-23 113.2 85 65.9
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 1.7e-23 113.2 85 65.9
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 1.7e-23 113.2 85 65.9
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 1.7e-23 113.2 94 63.8
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 2.2e-23 112.8 97 67.0
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 2.9e-23 112.5 93 60.2
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 3.7e-23 112.1 95 60.0
Peaxi162Scf00126g00524 Petunia axillaris HOM05D002653 ORTHO05D002623 4.9e-23 111.7 95 60.0
Cc11_g00280 Coffea canephora HOM05D002653 ORTHO05D002623 6.4e-23 111.3 95 60.0
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 1.1e-22 110.5 95 61.1
arahy.Tifrunner.gnm1.ann1.U4FA7I Arachis hypogaea HOM05D002653 ORTHO05D002623 1.1e-22 110.5 90 65.6
Gorai.012G024500 Gossypium raimondii HOM05D002653 ORTHO05D002623 2.4e-22 109.4 94 61.7
Aqoxy4G01176 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 4.1e-22 108.6 89 60.7
Actinidia28775 Actinidia chinensis HOM05D002313 ORTHO05D002623 7.0e-22 107.8 92 57.6
unitig_8.g3108 Utricularia gibba HOM05D002653 ORTHO05D002623 9.2e-22 107.5 95 63.2
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 1.5e-19 100.1 95 56.8
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 4.7e-18 95.1 89 51.7
Os08g0116566 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 1.7e-15 86.7 95 44.2
HPP92_001355 Vanilla planifolia HOM05D002653 ORTHO05D002623 2.9e-15 85.9 95 47.4
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 4.9e-15 85.1 95 44.2
arahy.Tifrunner.gnm1.ann1.Y0I0AR Arachis hypogaea HOM05D002653 ORTHO05D002623 8.3e-15 84.3 69 65.2
Actinidia28844 Actinidia chinensis HOM05D002313 ORTHO05D002623 2.4e-14 82.8 68 61.8
arahy.Tifrunner.gnm1.ann1.LJ799F Arachis hypogaea HOM05D002653 ORTHO05D002623 2.4e-14 82.8 72 61.1
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 5.4e-14 81.6 89 44.9
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 6.0e-13 78.2 95 43.2
SEGI_37137 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 6.0e-13 78.2 61 62.3
HPP92_001361 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.2e-10 70.5 66 51.5
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 2.4e-09 66.2 89 39.3
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 1.5e-08 63.5 64 53.1
Ca_30710_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 5.8e-08 61.6 34 97.1
arahy.Tifrunner.gnm1.ann1.P3JCM3 Arachis hypogaea HOM05D002653 ORTHO05D002623 1.3e-07 60.5 39 76.9


User provided reference genes

Program Settings