Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.7e-274 948.7 485 100.0
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 6.7e-239 830.5 465 89.2
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 3.3e-238 828.2 477 87.2
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 7.2e-225 783.9 475 82.1
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 2.1e-224 782.3 466 82.4
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.6e-222 775.4 465 82.6
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.8e-218 761.5 465 80.6
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 4.3e-217 758.1 496 77.4
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.3e-215 752.3 496 77.2
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 4.9e-213 744.6 479 78.7
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 4.4e-206 721.5 462 76.0
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.2e-205 719.2 477 74.2
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.4e-204 716.5 510 71.2
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 4.1e-204 714.9 465 74.8
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.0e-202 710.3 466 74.5
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 8.6e-202 707.2 462 74.0
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.5e-201 706.4 505 69.7
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.3e-201 705.3 462 74.0
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 3.3e-201 705.3 465 77.6
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 3.3e-201 705.3 478 72.2
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.2e-200 703.4 465 73.5
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.2e-200 703.4 465 73.3
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 3.6e-200 701.8 463 71.5
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 4.7e-200 701.4 465 73.1
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 4.7e-200 701.4 465 73.1
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 6.2e-200 701.0 477 73.0
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 8.1e-200 700.7 462 73.4
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.4e-199 699.9 467 72.4
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.4e-199 699.9 465 71.6
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.8e-199 699.5 463 72.8
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.8e-199 699.5 463 72.8
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.3e-199 699.1 462 73.8
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 2.3e-199 699.1 463 72.8
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.3e-199 699.1 462 73.4
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 4.0e-199 698.4 465 73.3
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 5.2e-199 698.0 463 72.1
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 5.2e-199 698.0 465 72.0
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 6.8e-199 697.6 463 72.6
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 6.8e-199 697.6 466 73.2
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 6.8e-199 697.6 465 71.0
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 8.9e-199 697.2 465 72.7
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.5e-198 696.4 465 72.5
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.5e-198 696.4 463 71.9
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 3.4e-198 695.3 463 71.9
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 7.5e-198 694.1 463 71.1
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 9.9e-198 693.7 466 71.0
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 1.7e-197 693.0 465 72.3
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.7e-197 693.0 474 70.9
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.7e-197 693.0 466 75.3
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 4.9e-197 691.4 476 70.6
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 4.9e-197 691.4 465 71.0
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 6.4e-197 691.0 462 74.0
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 8.3e-197 690.6 465 72.5
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 8.3e-197 690.6 463 72.4
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.1e-196 690.3 465 71.0
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.4e-196 689.9 463 71.7
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.9e-196 689.5 465 71.2
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 1.9e-196 689.5 462 71.9
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 3.2e-196 688.7 463 71.7
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 7.1e-196 687.6 465 73.1
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 3.5e-195 685.3 478 69.5
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 1.0e-194 683.7 465 72.0
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 3.9e-194 681.8 463 69.8
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 6.6e-194 681.0 463 70.6
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.5e-193 679.9 461 70.7
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.5e-193 679.9 464 71.8
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.9e-193 679.5 465 70.8
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.9e-193 679.5 467 70.4
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 4.3e-193 678.3 465 71.4
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.2e-192 676.8 464 72.4
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 2.8e-192 675.6 464 72.0
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 4.7e-192 674.9 462 72.7
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-191 673.7 505 66.5
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.4e-191 673.3 477 69.8
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.8e-191 672.9 495 67.5
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.3e-191 672.5 463 70.4
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.1e-191 672.2 462 71.9
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 4.0e-191 671.8 463 70.6
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 6.8e-191 671.0 457 72.4
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 6.8e-191 671.0 479 70.6
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.4e-190 668.7 472 70.1
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 7.6e-190 667.5 463 69.1
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 2.9e-189 665.6 463 68.9
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 4.9e-189 664.8 492 68.7
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 8.4e-189 664.1 465 71.6
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 9.2e-188 660.6 475 69.1
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-186 656.8 476 68.3
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-186 656.8 476 68.3
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 6.6e-186 654.4 459 70.2
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-185 653.7 476 68.1
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 4.3e-185 651.7 465 68.8
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 1.2e-184 650.2 462 70.3
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 8.1e-184 647.5 466 68.5
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.0e-183 645.2 472 66.9
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 4.0e-183 645.2 475 66.9
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 9.0e-183 644.0 540 61.7
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.5e-182 643.3 464 69.2
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.5e-182 643.3 465 67.3
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 3.4e-182 642.1 463 69.8
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.7e-181 639.8 476 66.6
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.9e-181 639.0 455 68.4
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.4e-180 636.7 462 69.5
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 5.4e-180 634.8 476 67.9
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 5.4e-180 634.8 475 66.9
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 1.0e-178 630.6 450 69.6
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.1e-175 620.5 448 69.0
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 4.0e-175 618.6 459 67.5
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.5e-174 616.7 462 65.8
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.0e-174 616.3 476 64.9
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.1e-171 606.3 464 64.2
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 3.5e-171 605.5 605 54.4
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.9e-170 602.1 448 67.9
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.3e-165 587.0 515 61.4
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.1e-159 567.4 459 63.2
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 2.2e-157 559.7 361 74.5
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.2e-155 553.9 464 63.1
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.9e-154 548.9 366 73.5
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.5e-150 537.0 459 58.0
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 9.3e-148 527.7 464 56.2
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 9.3e-148 527.7 391 67.3
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 1.3e-144 517.3 475 55.4
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.4e-143 513.8 457 56.7
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 5.0e-141 505.4 359 68.5
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 8.2e-136 488.0 359 68.5
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.1e-135 486.1 464 57.1
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.1e-131 473.4 480 51.9
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 6.3e-128 461.8 394 62.2
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 9.1e-127 458.0 325 67.4
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 9.7e-121 438.0 312 69.9
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.7e-120 436.0 288 73.6
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 3.8e-117 426.0 272 79.0
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 4.5e-110 402.5 496 45.0
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 5.7e-105 385.6 478 44.6
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 6.6e-101 372.1 219 82.6
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 2.5e-100 370.2 272 68.8
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 3.3e-100 369.8 243 72.4
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 1.1e-90 338.2 215 74.9
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 9.8e-89 331.6 216 73.6
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 2.2e-88 330.5 459 40.5
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.0e-85 320.1 234 67.1
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.2e-83 314.7 246 64.6
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 2.3e-82 310.5 220 69.1
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 3.1e-82 310.1 217 68.7
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.4e-79 300.4 230 62.6
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 6.6e-77 292.4 197 73.1
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 2.6e-73 280.4 471 37.4
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 4.9e-72 276.2 263 53.6
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 9.6e-68 261.9 187 71.1
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.4e-65 253.1 488 34.2
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.9e-60 237.7 285 48.8
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.8e-58 231.1 154 74.7
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.3e-53 214.2 145 73.1
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.1e-52 211.8 191 60.7
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.3e-52 210.3 283 43.8
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.9e-47 194.5 139 72.7
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.4e-42 177.6 137 61.3
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.9e-40 169.9 125 63.2
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 1.9e-39 167.9 124 65.3
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.5e-39 167.5 114 69.3
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 4.1e-34 150.2 150 54.0
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 2.6e-33 147.5 309 38.5
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.2e-31 140.2 80 81.2
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 7.2e-31 139.4 308 35.7
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 7.2e-31 139.4 88 73.9
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 4.3e-28 130.2 82 67.1
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.3e-27 128.6 76 80.3
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 1.4e-26 125.2 103 68.0
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 3.1e-26 124.0 81 74.1
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.2e-25 122.1 84 67.9
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.5e-25 120.2 77 72.7
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 3.6e-22 110.5 64 78.1
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.8e-21 108.2 64 79.7
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.8e-21 108.2 143 44.1
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 1.1e-18 99.0 62 69.4
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 2.4e-18 97.8 85 61.2
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 4.1e-18 97.1 85 57.6
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 9.1e-18 95.9 81 65.4
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 2.0e-17 94.7 64 65.6
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 1.7e-16 91.7 70 55.7
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 4.2e-15 87.0 55 72.7
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.7e-12 76.6 153 39.2
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 2.2e-11 74.7 48 75.0
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.3e-10 70.1 111 41.4
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-07 62.4 51 54.9


User provided reference genes

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