Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 8.7e-279 963.0 483 100.0
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 6.9e-244 847.0 508 84.1
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 2.9e-242 841.6 475 87.2
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 6.7e-239 830.5 479 86.0
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 7.2e-233 810.4 471 84.1
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 1.1e-217 760.0 480 78.1
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 3.2e-217 758.4 482 78.0
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 4.2e-217 758.1 469 78.7
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 5.2e-215 751.1 475 77.5
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.5e-214 749.6 480 75.6
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.3e-210 736.5 471 75.6
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.9e-210 735.3 480 74.0
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 6.5e-210 734.2 473 75.3
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.2e-208 729.9 502 71.9
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 2.8e-208 728.8 462 76.8
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 3.0e-207 725.3 502 71.9
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.1e-204 715.3 487 72.9
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 5.9e-203 711.1 466 74.5
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 2.3e-202 709.1 518 68.0
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.5e-201 705.7 469 71.0
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.8e-200 702.2 475 74.1
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 5.2e-199 698.0 471 69.4
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 5.2e-199 698.0 473 70.0
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.5e-198 696.4 469 70.1
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 2.0e-198 696.0 471 70.3
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 4.4e-198 694.9 473 70.0
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 2.2e-197 692.6 471 68.6
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.4e-196 689.9 477 69.0
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 7.0e-196 687.6 467 69.4
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 2.0e-195 686.0 470 69.8
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.7e-195 685.6 462 69.5
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 7.8e-195 684.1 477 67.7
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.0e-194 683.7 475 67.2
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 8.6e-194 680.6 473 67.7
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 8.6e-194 680.6 469 67.6
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.1e-193 680.2 477 69.4
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 2.5e-193 679.1 478 66.5
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.3e-193 678.7 473 69.3
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.3e-193 678.7 468 68.6
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.3e-193 678.7 465 68.4
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 5.6e-193 677.9 481 66.5
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 5.6e-193 677.9 473 67.0
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 2.8e-192 675.6 481 67.6
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 3.6e-192 675.2 462 68.8
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.1e-191 673.7 471 67.5
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 1.1e-191 673.7 478 66.9
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.8e-191 672.9 471 66.2
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.8e-191 672.9 481 67.2
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.8e-191 672.9 468 67.7
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 8.9e-191 670.6 469 68.0
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.2e-190 670.2 466 68.5
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 1.2e-190 670.2 476 67.4
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 2.0e-190 669.5 481 65.3
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 2.0e-190 669.5 471 69.0
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.6e-190 669.1 471 68.8
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 5.8e-190 667.9 462 68.4
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 5.8e-190 667.9 462 68.4
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 5.8e-190 667.9 462 67.5
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 2.9e-189 665.6 477 65.2
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.9e-188 662.9 471 65.8
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 3.2e-188 662.1 462 68.0
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 4.1e-188 661.8 469 67.6
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 4.1e-188 661.8 474 70.0
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 7.0e-188 661.0 462 67.3
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 7.0e-188 661.0 469 67.6
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 7.0e-188 661.0 462 67.7
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 7.0e-188 661.0 462 67.7
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 9.2e-188 660.6 474 65.2
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.2e-187 660.2 469 67.4
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.6e-187 659.8 473 65.8
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 2.1e-187 659.4 462 68.2
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 4.6e-187 658.3 475 69.3
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.0e-186 657.1 462 67.1
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 3.9e-186 655.2 484 66.1
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.1e-185 653.7 471 65.0
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.1e-185 653.7 469 66.5
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 1.5e-185 653.3 473 65.3
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 5.6e-185 651.4 462 67.1
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.7e-184 648.3 494 63.6
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 4.7e-184 648.3 471 67.1
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 4.0e-183 645.2 477 65.0
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 4.0e-183 645.2 503 64.0
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 5.2e-183 644.8 469 65.7
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 2.0e-182 642.9 490 65.3
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 9.9e-182 640.6 473 64.7
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 4.9e-181 638.3 471 64.3
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.9e-181 638.3 471 67.1
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.9e-181 638.3 471 67.1
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.4e-180 636.7 471 63.9
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.9e-180 636.3 458 65.7
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.9e-180 636.3 481 62.6
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.4e-180 636.0 471 66.9
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 7.1e-180 634.4 474 66.0
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 7.1e-180 634.4 471 63.7
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 6.0e-179 631.3 479 63.3
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.3e-178 630.2 455 65.5
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 2.3e-178 629.4 469 65.2
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.3e-178 629.4 478 64.0
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.0e-178 629.0 471 65.4
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 1.1e-177 627.1 459 65.6
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 2.4e-175 619.4 466 64.4
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 2.4e-175 619.4 455 66.2
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 4.0e-175 618.6 469 64.0
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 8.9e-175 617.5 535 57.8
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.2e-174 617.1 486 61.7
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.3e-173 613.6 459 64.9
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.0e-170 604.0 467 62.3
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.3e-170 603.6 462 63.0
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.1e-169 600.5 617 52.5
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.3e-169 599.0 471 63.7
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 9.6e-169 597.4 459 63.6
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.2e-168 597.0 486 60.7
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.5e-161 573.5 526 57.6
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.7e-157 560.1 473 59.6
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 4.3e-153 545.4 363 70.0
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.1e-151 539.3 366 69.1
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 5.8e-150 535.0 390 65.6
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 5.5e-148 528.5 469 57.8
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 7.1e-148 528.1 463 56.8
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 6.5e-141 505.0 362 66.9
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 6.0e-139 498.4 471 52.4
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.8e-136 488.8 461 53.4
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 1.5e-134 483.8 473 51.6
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 5.0e-133 478.8 471 54.8
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.2e-132 476.1 361 64.0
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.6e-126 456.4 478 51.5
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 2.2e-125 453.4 381 59.6
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 3.2e-124 449.5 326 66.0
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 2.1e-123 446.8 324 68.2
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.3e-119 432.2 287 70.4
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 5.3e-111 405.6 290 69.0
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.6e-102 377.5 280 65.0
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.6e-102 377.5 475 43.2
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.3e-101 374.4 496 42.5
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 2.5e-100 370.2 219 81.3
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 8.0e-99 365.2 243 70.4
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 6.8e-90 335.5 217 71.4
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 4.3e-84 316.2 212 68.4
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 4.3e-84 316.2 456 39.0
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 1.6e-83 314.3 227 65.6
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.2e-81 308.1 202 72.8
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 2.6e-81 307.0 227 63.4
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.7e-80 303.1 229 63.8
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 8.3e-80 302.0 227 63.0
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 3.2e-79 300.1 261 55.9
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 6.4e-72 275.8 267 52.8
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.0e-69 268.5 463 36.3
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.8e-66 257.7 187 66.8
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.9e-61 240.0 270 51.5
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 3.8e-56 223.4 163 65.6
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.9e-55 221.1 471 33.3
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 9.6e-52 208.8 188 57.4
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.4e-50 204.1 152 62.5
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.1e-50 203.8 285 43.2
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.2e-47 193.7 139 65.5
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.3e-40 171.8 125 60.8
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.9e-40 169.9 137 59.9
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.5e-36 158.3 114 63.2
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 9.6e-36 155.6 124 58.1
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 7.1e-31 139.4 80 80.0
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 9.3e-31 139.0 154 48.1
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 3.5e-30 137.1 314 34.4
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.3e-29 135.2 88 70.5
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 6.7e-29 132.9 348 31.0
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.3e-28 130.6 76 80.3
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 2.2e-24 117.9 102 60.8
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 2.9e-24 117.5 84 64.3
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 8.4e-24 115.9 88 59.1
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 3.2e-23 114.0 90 54.4
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.6e-22 111.7 64 81.2
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.5e-20 104.4 63 74.6
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 7.4e-20 102.8 77 61.0
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 4.8e-19 100.1 138 43.5
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.1e-18 99.0 77 62.3
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 5.9e-17 93.2 64 67.2
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.0e-16 92.4 80 58.8
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 2.2e-16 91.3 52 76.9
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 2.1e-14 84.7 64 54.7
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 4.6e-14 83.6 84 44.0
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 7.9e-14 82.8 100 44.0
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.9e-13 80.5 151 37.1
Medtr6g046320 Medicago truncatula HOM05D000007 ORTHO05D000521 2.6e-09 67.8 51 66.7
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.9e-09 66.6 111 40.5
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-07 62.4 48 58.3
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 5.5e-07 60.1 51 51.0


User provided reference genes

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