Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 2.9e-137 491.9 250 100.0
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 4.4e-117 424.9 251 86.5
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 2.0e-114 416.0 252 83.3
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 1.1e-112 410.2 257 82.1
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.3e-108 396.7 256 78.9
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 6.4e-108 394.4 256 78.9
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 1.7e-105 386.3 250 78.4
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 2.3e-102 375.9 219 85.8
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 7.8e-98 360.9 212 84.4
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 3.3e-96 355.5 229 80.3
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 4.3e-96 355.1 238 76.5
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 5.6e-96 354.8 229 80.3
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 7.3e-96 354.4 220 80.0
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 1.6e-95 353.2 217 80.6
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 2.1e-95 352.8 224 79.9
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 2.8e-95 352.4 226 77.4
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 3.6e-95 352.1 236 75.8
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 4.7e-95 351.7 217 80.2
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 1.1e-94 350.5 229 77.7
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 1.8e-94 349.7 224 76.8
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 1.8e-94 349.7 250 72.8
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 4.0e-94 348.6 229 77.3
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 5.2e-94 348.2 236 75.4
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 6.8e-94 347.8 237 75.1
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 6.8e-94 347.8 236 75.8
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 8.9e-94 347.4 237 75.1
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 8.9e-94 347.4 236 75.0
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 1.2e-93 347.1 238 75.2
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 1.5e-93 346.7 219 79.0
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 2.0e-93 346.3 220 80.5
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 5.8e-93 344.7 215 80.5
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 7.6e-93 344.4 215 79.5
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 1.3e-92 343.6 215 78.6
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 1.3e-92 343.6 245 72.2
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 2.2e-92 342.8 227 76.7
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 2.2e-92 342.8 214 81.3
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 2.9e-92 342.4 213 79.8
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 2.9e-92 342.4 234 74.8
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 6.4e-92 341.3 233 76.0
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 1.1e-91 340.5 219 77.6
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 1.4e-91 340.1 216 79.2
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 3.2e-91 339.0 231 74.9
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 5.4e-91 338.2 224 76.8
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 5.4e-91 338.2 220 77.3
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 5.4e-91 338.2 215 78.1
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 7.1e-91 337.8 238 73.1
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 1.2e-90 337.0 245 71.8
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 4.6e-90 335.1 213 78.4
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 4.6e-90 335.1 205 80.5
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 6.0e-90 334.7 227 74.0
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 3.0e-89 332.4 214 78.0
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 3.9e-89 332.0 219 77.2
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 3.9e-89 332.0 219 76.7
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 1.9e-88 329.7 237 73.8
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.9e-88 329.7 214 77.1
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 2.5e-88 329.3 218 77.5
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 2.5e-88 329.3 214 75.7
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 3.3e-88 328.9 227 72.7
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 3.3e-88 328.9 219 75.3
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 3.3e-88 328.9 215 77.7
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 3.3e-88 328.9 215 77.7
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 5.6e-88 328.2 217 73.7
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 5.6e-88 328.2 214 76.2
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 9.6e-88 327.4 214 76.2
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 1.2e-87 327.0 214 76.2
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 1.6e-87 326.6 231 70.6
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 2.1e-87 326.2 219 75.8
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 6.2e-87 324.7 222 75.7
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 6.2e-87 324.7 222 75.7
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 6.2e-87 324.7 241 68.5
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 8.1e-87 324.3 225 75.1
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 8.1e-87 324.3 244 70.9
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 1.1e-86 323.9 231 70.1
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 1.4e-86 323.6 240 68.8
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 1.8e-86 323.2 179 87.2
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.8e-86 323.2 215 70.7
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 1.8e-86 323.2 215 74.9
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 3.1e-86 322.4 202 80.2
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 6.9e-86 321.2 215 77.2
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 1.2e-85 320.5 224 71.0
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.5e-85 320.1 237 70.9
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 1.5e-85 320.1 188 81.9
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 2.0e-85 319.7 222 74.3
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 2.0e-85 319.7 248 67.7
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 2.0e-85 319.7 216 76.4
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 2.6e-85 319.3 215 72.6
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 5.8e-85 318.2 218 75.2
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 7.6e-85 317.8 213 71.4
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 9.9e-85 317.4 213 75.1
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.3e-84 317.0 205 78.5
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.7e-84 316.6 187 81.8
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 1.7e-84 316.6 220 73.6
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 2.9e-84 315.8 220 75.0
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 8.4e-84 314.3 219 73.5
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 1.1e-83 313.9 225 72.0
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 1.9e-83 313.2 239 68.6
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 4.2e-83 312.0 204 77.0
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 5.4e-83 311.6 248 66.9
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 7.1e-83 311.2 217 72.8
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 7.1e-83 311.2 237 70.9
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.2e-82 310.5 238 66.4
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 7.8e-82 307.8 178 83.7
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 8.7e-81 304.3 218 71.1
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 2.4e-78 296.2 211 71.6
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 9.9e-77 290.8 202 74.8
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 4.9e-76 288.5 220 65.0
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 1.9e-72 276.6 177 73.4
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.1e-70 270.8 208 61.5
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 2.2e-68 263.1 213 61.0
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 4.6e-66 255.4 183 71.0
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 1.2e-61 240.7 179 63.1
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 2.7e-58 229.6 195 56.4
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 1.6e-50 203.8 134 73.1
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.8e-47 193.0 149 63.8
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 2.0e-45 186.8 111 82.0
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 2.9e-44 183.0 216 46.3
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 6.3e-39 165.2 205 44.9
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 1.6e-26 124.0 88 68.2
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 1.4e-22 110.9 171 35.7
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 5.9e-21 105.5 75 72.0
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.2e-18 97.8 67 68.7
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 1.9e-11 73.9 60 60.0
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 5.2e-09 65.9 237 27.8
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 6.8e-09 65.5 193 25.9
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.5e-08 64.3 151 27.8
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 2.0e-08 63.9 235 26.4
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 4.4e-08 62.8 239 26.8
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 5.7e-08 62.4 127 32.3
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 7.5e-08 62.0 127 29.9
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 7.5e-08 62.0 127 29.9
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 7.5e-08 62.0 127 29.9
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 7.5e-08 62.0 192 26.6
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 7.5e-08 62.0 190 28.4
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 7.5e-08 62.0 127 31.5
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 9.8e-08 61.6 132 29.5
Duzib114G0802 Durio zibethinus HOM05D002933 ORTHO05D009221 9.8e-08 61.6 192 27.6
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 9.8e-08 61.6 234 25.2
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 1.3e-07 61.2 173 30.6
Migut.F01519 Erythranthe guttata HOM05D002933 ORTHO05D009221 2.2e-07 60.5 235 23.4
Thecc.10G052300 Theobroma cacao HOM05D002933 ORTHO05D009221 2.2e-07 60.5 195 27.2
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 2.8e-07 60.1 136 30.1
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 2.8e-07 60.1 127 31.5
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 2.8e-07 60.1 127 29.1
Lalb_Chr21g0307341 Lupinus albus HOM05D002933 ORTHO05D009221 2.8e-07 60.1 219 24.2
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 3.7e-07 59.7 199 25.1
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 3.7e-07 59.7 178 25.8
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 4.9e-07 59.3 127 30.7
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 4.9e-07 59.3 127 30.7
Medtr1g115410 Medicago truncatula HOM05D002933 ORTHO05D009221 8.3e-07 58.5 231 25.5
Prupe.2G229200 Prunus persica HOM05D002933 ORTHO05D009221 8.3e-07 58.5 251 25.5
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 1.1e-06 58.2 193 25.9
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 1.1e-06 58.2 238 24.8
Hma1.2p1_0402F.1_g144930 Hydrangea macrophylla HOM05D002933 ORTHO05D009221 1.4e-06 57.8 187 27.3
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 1.4e-06 57.8 190 26.3
Gohir.D04G061800 Gossypium hirsutum HOM05D002933 ORTHO05D009221 1.8e-06 57.4 192 26.6
Cpa.g.sc1.348 Carica papaya HOM05D002933 ORTHO05D009221 2.4e-06 57.0 187 24.6
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 2.4e-06 57.0 188 26.1
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 2.4e-06 57.0 202 24.8
Aqoxy4G03026 Aquilegia oxysepala HOM05D002933 ORTHO05D009221 3.1e-06 56.6 187 24.1
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 3.1e-06 56.6 178 24.7
Nn3g20127 Nelumbo nucifera HOM05D002933 ORTHO05D009221 3.1e-06 56.6 200 25.5
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 4.1e-06 56.2 178 24.2
TWI63G1829 Tripterygium wilfordii HOM05D002933 ORTHO05D009221 4.1e-06 56.2 83 37.3
CsaV3_5G026270 Cucumis sativus L. HOM05D002933 ORTHO05D009221 5.4e-06 55.8 247 22.7
DCAR_015210 Daucus carota HOM05D002933 ORTHO05D009221 5.4e-06 55.8 240 25.8
ECA238G2744 Erigeron canadensis HOM05D002933 ORTHO05D009221 5.4e-06 55.8 202 25.2
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 5.4e-06 55.8 151 25.2
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 7.0e-06 55.5 157 28.0
Gohir.A05G350800 Gossypium hirsutum HOM05D002933 ORTHO05D009221 7.0e-06 55.5 207 25.6


User provided reference genes

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