Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 9.4e-184 646.7 329 100.0
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.4e-166 589.7 329 89.1
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 1.4e-158 563.1 330 86.1
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 1.5e-157 559.7 332 85.5
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 2.6e-157 558.9 332 85.5
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 9.8e-157 557.0 331 85.5
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 1.9e-152 542.7 326 83.1
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 8.8e-150 533.9 329 83.3
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 3.4e-141 505.4 313 81.2
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 3.7e-140 501.9 326 79.4
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 5.0e-137 491.5 330 78.2
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 2.8e-135 485.7 320 75.6
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 2.3e-134 482.6 324 75.0
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 3.1e-134 482.3 299 82.3
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 3.1e-134 482.3 322 74.8
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 4.0e-134 481.9 318 74.2
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 1.5e-133 479.9 322 75.5
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 8.3e-132 474.2 325 73.8
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 4.1e-131 471.9 324 73.5
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 5.4e-131 471.5 325 72.9
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 2.0e-130 469.5 318 76.4
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 3.5e-130 468.8 322 73.3
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 4.6e-130 468.4 335 70.4
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 6.0e-130 468.0 322 73.6
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 6.0e-130 468.0 326 72.7
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 7.8e-130 467.6 322 71.7
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 7.8e-130 467.6 318 73.6
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 7.8e-130 467.6 319 73.4
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.8e-130 467.6 322 71.1
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.8e-130 467.6 322 71.1
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.7e-129 466.5 325 73.2
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.9e-129 465.3 318 73.0
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 8.6e-129 464.2 323 71.2
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 1.9e-128 463.0 322 71.7
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.5e-128 462.6 326 72.1
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 2.5e-128 462.6 318 75.2
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 5.6e-128 461.5 322 71.4
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 5.6e-128 461.5 322 71.7
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 7.3e-128 461.1 326 71.8
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 9.5e-128 460.7 328 69.5
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.6e-127 459.9 331 72.8
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 5.2e-126 454.9 327 70.3
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.2e-125 453.8 321 70.7
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.5e-125 453.4 350 67.4
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 2.0e-125 453.0 326 70.9
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 2.6e-125 452.6 330 70.3
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 2.2e-124 449.5 318 70.8
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 4.9e-124 448.4 324 69.8
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.4e-124 448.0 352 67.0
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.6e-122 443.4 321 67.6
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.7e-122 442.6 327 70.0
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 6.0e-122 441.4 321 68.2
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 6.0e-122 441.4 329 68.4
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 1.0e-121 440.7 327 67.3
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.3e-121 440.3 325 69.2
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 5.1e-121 438.3 321 67.0
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 3.3e-120 435.6 320 68.1
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 3.3e-120 435.6 314 72.3
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 5.6e-120 434.9 312 70.2
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 5.6e-120 434.9 336 69.6
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 7.3e-120 434.5 323 69.0
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 7.3e-120 434.5 322 67.1
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 2.8e-119 432.6 328 66.2
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 6.2e-119 431.4 313 70.0
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 6.2e-119 431.4 326 68.4
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.1e-118 430.6 322 67.7
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.4e-118 430.3 328 65.9
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.8e-118 429.9 322 68.3
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 3.1e-118 429.1 328 65.5
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 6.8e-118 427.9 329 65.7
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 6.8e-118 427.9 325 68.6
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 6.8e-118 427.9 322 69.3
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 8.9e-118 427.6 320 68.4
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.5e-117 426.8 313 68.1
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 1.5e-117 426.8 324 68.8
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.0e-117 426.4 318 68.9
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 2.0e-117 426.4 324 68.8
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 5.8e-117 424.9 297 71.7
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 5.8e-117 424.9 325 67.1
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 1.3e-116 423.7 314 66.9
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 2.4e-115 419.5 340 63.8
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 7.8e-114 414.5 312 68.3
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 2.3e-113 412.9 327 66.1
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 3.0e-113 412.5 251 78.9
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 3.9e-113 412.1 320 65.6
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 1.9e-112 409.8 296 73.0
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.2e-111 407.1 291 70.1
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 1.6e-111 406.8 322 63.7
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 4.7e-111 405.2 328 65.9
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 2.4e-110 402.9 323 64.7
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 3.1e-110 402.5 327 64.5
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 4.0e-110 402.1 329 65.0
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 9.0e-110 401.0 345 62.9
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 2.0e-109 399.8 323 64.7
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 3.4e-109 399.1 310 66.8
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 9.9e-109 397.5 292 69.5
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.4e-107 393.7 292 69.5
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 2.4e-107 392.9 330 64.8
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.2e-106 390.6 327 65.1
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.6e-106 390.2 341 60.4
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 3.0e-105 386.0 299 67.9
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 2.5e-104 382.9 330 60.3
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.6e-103 380.2 325 63.1
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 1.1e-102 377.5 318 61.0
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 2.0e-101 373.2 293 66.6
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 2.6e-101 372.9 298 65.4
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.2e-99 365.9 300 65.0
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 9.3e-99 364.4 250 71.6
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.1e-98 363.2 323 61.0
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.3e-97 360.5 326 61.3
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.1e-96 357.5 299 65.2
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.1e-94 350.9 222 76.6
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.4e-94 350.5 221 76.0
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.6e-93 346.3 296 60.5
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 7.1e-91 338.2 324 59.3
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 9.3e-91 337.8 268 66.4
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.2e-90 337.4 242 71.5
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.1e-86 324.3 264 62.5
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 6.9e-86 321.6 336 50.9
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.5e-85 320.5 246 69.9
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 4.9e-84 315.5 308 54.2
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.2e-83 312.8 265 61.9
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.1e-78 297.7 196 84.2
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.0e-77 293.5 228 67.5
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 7.2e-75 285.0 233 63.1
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 5.1e-73 278.9 241 64.7
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 1.7e-71 273.9 293 53.9
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 2.8e-71 273.1 273 51.6
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 4.8e-71 272.3 232 58.2
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 5.9e-69 265.4 210 68.6
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.7e-68 263.8 159 77.4
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 7.2e-67 258.5 268 54.5
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.6e-66 257.3 223 62.8
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 3.6e-66 256.1 173 67.1
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.5e-61 239.2 212 60.4
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 7.7e-61 238.4 221 57.9
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 7.7e-61 238.4 221 57.9
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 8.0e-58 228.4 223 58.7
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 2.3e-57 226.9 227 56.4
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 6.7e-57 225.3 278 53.6
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 3.3e-56 223.0 228 51.3
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 4.5e-53 212.6 140 72.9
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 4.2e-51 206.1 191 60.7
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.2e-50 204.5 141 71.6
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 3.8e-44 183.0 262 41.6
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 2.1e-42 177.2 116 71.6
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 1.2e-40 171.4 237 43.5
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.3e-39 167.9 230 37.8
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 4.8e-39 166.0 151 49.7
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 1.4e-38 164.5 148 56.1
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 1.7e-36 157.5 192 45.3
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 2.3e-36 157.1 165 53.9
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 2.3e-36 157.1 165 53.9
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 6.6e-36 155.6 164 53.7
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 7.2e-35 152.1 108 63.9
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 6.1e-34 149.1 121 68.6
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 2.0e-32 144.1 186 48.9
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 2.8e-31 140.2 103 80.6
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.1e-30 138.3 153 44.4
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.1e-26 124.0 174 51.7
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 2.1e-26 124.0 98 74.5
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 3.1e-25 120.2 82 70.7
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 9.8e-24 115.2 98 58.2
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.9e-22 110.9 87 63.2
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 3.2e-22 110.2 108 57.4
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 9.2e-22 108.6 69 59.4
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 6.0e-21 105.9 108 47.2
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 6.0e-21 105.9 69 60.9
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 6.0e-21 105.9 66 60.6
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 3.9e-20 103.2 315 28.9
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 3.3e-19 100.1 98 49.0
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 3.3e-19 100.1 98 49.0
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.2e-18 98.2 63 63.5
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 1.6e-18 97.8 100 44.0
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 2.8e-18 97.1 113 41.6
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 8.9e-17 92.0 68 54.4
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 8.9e-17 92.0 68 54.4
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.5e-16 91.3 103 42.7
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.5e-16 91.3 103 42.7
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 4.9e-15 86.3 109 42.2
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 5.4e-14 82.8 80 53.8
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 1.7e-12 77.8 177 37.3
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 7.3e-11 72.4 71 56.3
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 4.9e-07 59.7 70 45.7
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 1.1e-06 58.5 71 49.3


User provided reference genes

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