Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 3.8e-151 538.1 267 100.0
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 9.1e-137 490.3 268 89.6
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 3.8e-135 485.0 267 86.9
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 4.0e-132 474.9 266 84.6
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 7.5e-131 470.7 267 83.1
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 2.8e-130 468.8 264 84.8
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 7.0e-129 464.2 282 79.4
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 9.1e-121 437.2 269 81.0
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.5e-118 429.9 267 75.7
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.6e-117 426.4 268 76.5
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 2.1e-117 426.0 268 76.5
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 2.2e-114 416.0 269 74.7
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.1e-113 413.7 263 74.1
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.4e-113 413.3 263 74.1
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 4.1e-113 411.8 267 73.8
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.6e-112 409.8 267 74.5
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 5.9e-112 407.9 267 74.9
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.3e-111 406.8 267 73.0
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 5.0e-111 404.8 268 73.9
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.1e-110 403.7 268 72.8
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 1.9e-110 402.9 267 73.4
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 2.5e-110 402.5 265 73.2
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 2.5e-110 402.5 265 72.5
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 5.6e-110 401.4 267 72.3
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 5.6e-110 401.4 264 73.1
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 7.3e-110 401.0 265 73.6
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 2.1e-109 399.4 268 72.4
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 4.0e-108 395.2 276 70.7
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 4.0e-108 395.2 265 71.7
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 6.8e-108 394.4 275 70.5
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 1.2e-107 393.7 265 70.6
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 1.5e-107 393.3 265 70.6
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 3.4e-107 392.1 264 72.0
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 5.8e-107 391.3 265 69.8
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 5.8e-107 391.3 265 69.8
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.3e-106 390.2 267 70.8
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.3e-106 390.2 267 71.2
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.7e-106 389.8 267 71.2
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 1.7e-106 389.8 235 77.9
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.7e-106 389.8 265 70.2
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.7e-106 389.8 264 70.5
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 3.7e-106 388.7 265 70.2
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.9e-106 388.3 267 70.8
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 6.4e-106 387.9 265 70.2
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 8.3e-106 387.5 265 69.8
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.1e-105 387.1 268 70.9
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 2.4e-105 386.0 267 70.4
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 7.0e-105 384.4 267 69.3
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 7.0e-105 384.4 265 70.2
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 1.2e-104 383.6 267 69.7
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 3.5e-104 382.1 265 68.3
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 4.6e-104 381.7 282 66.3
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 6.0e-104 381.3 265 68.7
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 1.3e-103 380.2 266 67.3
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 2.3e-103 379.4 265 68.3
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 3.9e-103 378.6 265 68.3
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 3.9e-103 378.6 264 67.8
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 5.0e-103 378.3 265 68.3
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.5e-102 376.7 265 68.7
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.5e-102 376.7 268 69.4
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.5e-102 376.7 263 69.6
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 4.3e-102 375.2 265 67.5
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 4.3e-102 375.2 264 67.8
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 4.3e-102 375.2 264 68.6
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 5.6e-102 374.8 262 68.7
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 1.6e-101 373.2 264 67.8
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.6e-101 373.2 264 67.8
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 2.1e-101 372.9 267 68.2
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 2.8e-101 372.5 262 67.9
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 4.7e-101 371.7 265 67.9
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 4.7e-101 371.7 265 67.5
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 6.2e-101 371.3 265 67.2
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 6.2e-101 371.3 265 67.2
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 6.2e-101 371.3 263 67.3
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 1.1e-100 370.5 267 67.4
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 1.1e-100 370.5 265 67.5
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 1.4e-100 370.2 300 62.0
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 1.8e-100 369.8 265 67.2
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 2.3e-100 369.4 265 66.8
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 2.3e-100 369.4 271 67.5
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 5.2e-100 368.2 269 68.0
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 6.8e-100 367.9 265 66.8
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 8.9e-100 367.5 263 67.3
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.2e-99 367.1 264 65.5
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.2e-99 367.1 265 66.8
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.2e-99 367.1 269 68.0
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 2.0e-99 366.3 271 68.3
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 7.5e-99 364.4 265 66.4
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 7.5e-99 364.4 271 67.5
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 9.8e-99 364.0 268 66.0
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 3.7e-98 362.1 265 66.0
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.2e-96 357.1 265 64.5
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 3.5e-96 355.5 233 70.4
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 6.0e-96 354.8 265 64.2
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 6.0e-96 354.8 211 77.3
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 7.8e-96 354.4 246 72.0
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 7.8e-96 354.4 265 64.2
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 1.3e-95 353.6 265 64.5
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 1.7e-95 353.2 265 63.4
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 5.1e-95 351.7 265 64.5
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 8.6e-95 350.9 265 63.8
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.1e-94 350.5 278 61.2
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.5e-94 350.1 182 92.9
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 3.3e-94 349.0 212 76.4
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 5.6e-94 348.2 325 56.0
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.4e-92 343.6 264 62.9
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 6.8e-92 341.3 267 62.2
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.2e-91 340.5 265 64.9
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.6e-91 339.3 263 63.9
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 5.8e-91 338.2 211 75.8
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 1.3e-90 337.0 266 62.8
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 4.9e-90 335.1 197 80.7
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.9e-89 333.2 213 73.2
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 9.2e-89 330.9 195 80.5
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.6e-88 330.1 211 73.5
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 1.0e-87 327.4 213 71.8
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 2.3e-87 326.2 269 61.3
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.5e-86 323.6 266 57.5
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 9.6e-86 320.9 244 64.8
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.4e-84 316.2 197 76.1
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 3.4e-83 312.4 190 78.9
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 5.8e-83 311.6 190 75.3
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 2.2e-82 309.7 248 60.5
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 4.9e-82 308.5 285 52.6
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 3.3e-78 295.8 265 57.0
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.6e-77 293.5 231 58.0
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 2.8e-77 292.7 230 58.7
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 2.4e-76 289.7 204 68.1
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 6.9e-76 288.1 170 80.0
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 2.2e-74 283.1 319 51.1
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 1.7e-71 273.5 235 60.0
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.6e-69 265.8 372 44.6
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 8.1e-69 264.6 230 54.3
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 1.5e-67 260.4 232 53.4
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 3.1e-60 236.1 192 60.4
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.0e-60 234.6 280 49.6
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 8.4e-58 228.0 231 50.6
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.2e-56 224.2 155 65.8
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 2.3e-55 219.9 209 55.5
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 5.3e-52 208.8 179 56.4
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 2.0e-51 206.8 146 72.6
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 5.0e-50 202.2 178 56.2
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 2.2e-45 186.8 145 61.4
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 6.9e-44 181.8 137 65.0
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 8.5e-42 174.9 140 62.9
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 3.6e-40 169.5 251 35.9
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.4e-38 161.8 103 74.8
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.1e-36 157.9 298 32.9
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 2.6e-35 153.3 96 71.9
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 9.4e-33 144.8 174 51.1
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 9.4e-33 144.8 251 35.9
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.7e-30 135.6 82 73.2
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 6.3e-29 132.1 173 41.0
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.5e-25 120.2 165 40.0
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 7.2e-25 118.6 75 69.3
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 5.9e-19 99.0 55 87.3
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 5.9e-19 99.0 55 87.3
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 7.7e-19 98.6 58 79.3
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.2e-17 93.2 119 41.2
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 5.5e-17 92.4 86 54.7
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.4e-15 87.8 83 53.0
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 2.0e-14 84.0 55 69.1
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 2.9e-10 70.1 60 60.0
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.2e-08 64.7 48 56.2
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.0e-07 61.6 37 78.4
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 8.8e-07 58.5 59 44.1
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 2.0e-06 57.4 44 54.5
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 2.0e-06 57.4 44 54.5


User provided reference genes

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