Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 3.6e-100 368.2 184 100.0
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 1.1e-88 330.1 184 90.2
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 2.3e-86 322.4 184 88.6
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 3.4e-82 308.5 184 83.2
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 9.8e-82 307.0 187 84.5
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 1.3e-81 306.6 189 81.5
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 8.3e-81 303.9 183 80.3
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 5.4e-80 301.2 186 80.6
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 9.2e-80 300.4 185 80.5
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 6.0e-79 297.7 184 79.9
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 1.3e-78 296.6 184 79.9
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 2.5e-77 292.4 184 78.3
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 4.3e-77 291.6 190 77.9
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 4.4e-74 281.6 184 76.6
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 4.4e-74 281.6 184 75.5
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 3.2e-72 275.4 184 76.1
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 7.1e-72 274.2 184 73.4
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 9.2e-72 273.9 191 72.3
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 2.1e-71 272.7 185 73.5
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 2.7e-71 272.3 184 76.1
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 3.5e-71 271.9 182 73.1
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 4.6e-71 271.6 183 73.8
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 1.0e-70 270.4 183 74.3
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 1.0e-70 270.4 184 71.7
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 3.0e-70 268.9 184 70.1
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 3.0e-70 268.9 184 70.1
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 3.9e-70 268.5 182 73.1
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 5.1e-70 268.1 184 70.1
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 6.6e-70 267.7 184 73.4
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 1.1e-69 266.9 184 71.2
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 2.5e-69 265.8 187 70.1
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 2.5e-69 265.8 183 71.6
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 4.3e-69 265.0 187 69.0
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 2.1e-68 262.7 184 73.9
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 2.1e-68 262.7 187 71.1
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 2.8e-68 262.3 187 71.1
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 3.6e-68 261.9 184 70.1
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 4.7e-68 261.5 184 70.7
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 6.2e-68 261.2 187 70.6
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 8.1e-68 260.8 184 74.5
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 1.1e-67 260.4 186 69.9
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 1.1e-67 260.4 184 69.6
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 1.1e-67 260.4 183 68.9
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 2.4e-67 259.2 184 69.6
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 4.0e-67 258.5 186 72.0
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.5e-66 256.5 182 69.8
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 1.5e-66 256.5 184 69.0
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 2.0e-66 256.1 182 69.8
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 2.6e-66 255.8 185 69.2
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 7.6e-66 254.2 184 68.5
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 9.9e-66 253.8 185 68.6
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 9.9e-66 253.8 185 68.6
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 9.9e-66 253.8 183 68.3
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 1.3e-65 253.4 185 69.7
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 2.2e-65 252.7 189 67.2
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 3.8e-65 251.9 182 67.6
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 4.9e-65 251.5 184 70.7
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 6.4e-65 251.1 184 67.4
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 1.1e-64 250.4 186 67.2
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 1.1e-64 250.4 186 67.2
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 1.1e-64 250.4 186 67.2
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 1.1e-64 250.4 183 72.1
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 1.1e-64 250.4 185 68.1
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 1.1e-64 250.4 183 67.2
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 3.2e-64 248.8 182 67.0
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 3.2e-64 248.8 182 67.0
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 5.4e-64 248.1 173 73.4
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 9.3e-64 247.3 184 67.4
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 1.2e-63 246.9 186 65.6
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 1.2e-63 246.9 182 67.0
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 1.6e-63 246.5 182 68.1
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 2.7e-63 245.7 183 71.0
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 2.7e-63 245.7 182 64.3
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 1.7e-62 243.0 184 65.2
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 2.3e-62 242.7 184 67.4
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 3.9e-62 241.9 184 64.1
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 6.6e-62 241.1 185 65.9
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 8.7e-62 240.7 184 65.2
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 4.3e-61 238.4 161 72.0
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 7.3e-61 237.7 185 65.4
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 2.1e-60 236.1 185 63.2
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 2.8e-60 235.7 182 66.5
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 3.6e-60 235.3 184 63.6
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 3.6e-60 235.3 185 63.2
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 4.8e-60 235.0 188 63.3
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 6.2e-60 234.6 183 68.9
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 6.2e-60 234.6 189 64.0
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 1.1e-59 233.8 185 63.2
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 2.4e-59 232.6 185 65.4
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 2.4e-59 232.6 186 63.4
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 3.1e-59 232.3 159 72.3
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 3.1e-59 232.3 185 65.9
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 4.0e-59 231.9 195 59.5
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 9.0e-59 230.7 190 62.1
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 2.0e-58 229.6 185 65.4
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 2.0e-58 229.6 182 62.1
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 2.6e-58 229.2 191 63.9
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 2.6e-58 229.2 182 62.6
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 4.4e-58 228.4 156 70.5
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 4.4e-58 228.4 187 63.1
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 6.4e-57 224.6 183 61.7
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 8.7e-54 214.2 237 52.3
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 3.3e-53 212.2 184 64.7
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 7.3e-53 211.1 198 57.6
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 6.2e-52 208.0 184 59.2
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 2.4e-51 206.1 185 58.9
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 9.9e-50 200.7 185 56.2
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 3.8e-49 198.7 187 56.1
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 1.4e-48 196.8 184 56.5
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 1.4e-48 196.8 185 55.1
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 3.2e-48 195.7 140 72.9
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 3.3e-45 185.7 147 63.3
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 2.8e-44 182.6 127 73.2
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.8e-43 179.9 166 56.6
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 4.0e-43 178.7 141 69.5
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 5.8e-42 174.9 133 65.4
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 5.8e-42 174.9 111 75.7
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 2.5e-40 169.5 173 53.8
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 3.2e-40 169.1 96 80.2
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 6.0e-39 164.9 156 54.5
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 4.1e-35 152.1 82 85.4
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 4.5e-34 148.7 183 46.4
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 3.7e-28 129.0 92 68.5
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 3.4e-26 122.5 175 39.4
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 2.2e-25 119.8 117 53.8
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 4.2e-24 115.5 113 55.8
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 2.3e-22 109.8 57 84.2
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 2.5e-16 89.7 76 60.5
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 4.2e-16 89.0 45 82.2
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 1.6e-15 87.0 46 78.3
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 3.6e-15 85.9 63 61.9
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 1.4e-14 84.0 79 59.5
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 6.7e-14 81.6 72 55.6
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.5e-13 80.5 76 56.6
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 6.5e-09 65.1 42 71.4
TAR005G0002 Trochodendron aralioides HOM05D005643 ORTHO05D006819 5.5e-08 62.0 65 52.3
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 1.0e-06 57.8 102 37.3
MBI07_g43742_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 6.7e-06 55.1 77 50.6


User provided reference genes

Program Settings