Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_09122_v3 Cicer arietinum L. HOM05D005315 ORTHO05D006589 2.4e-171 605.5 325 100.0
Medtr4g104580 Medicago truncatula HOM05D005315 ORTHO05D006589 3.1e-155 552.0 323 90.7
Psat3g025640 Pisum sativum HOM05D005315 ORTHO05D006589 2.2e-153 545.8 325 88.9
TPR.G32271 Trifolium pratense HOM05D005315 ORTHO05D006589 4.8e-148 528.1 323 87.3
Phvul.001G203400 Phaseolus vulgaris HOM05D005315 ORTHO05D006589 1.9e-144 516.2 326 86.8
VMungo1383G1398 Vigna mungo HOM05D005315 ORTHO05D006589 9.4e-144 513.8 326 86.2
Glyma.19G207500 Glycine max HOM05D005315 ORTHO05D006589 8.8e-142 507.3 326 85.0
Medtr7g108240 Medicago truncatula HOM05D005315 ORTHO05D006589 1.7e-140 503.1 288 91.7
Glyma.03G210300 Glycine max HOM05D005315 ORTHO05D006589 6.7e-134 481.1 326 81.6
Lj1g0005840 Lotus japonicus HOM05D005315 ORTHO05D006589 5.7e-133 478.0 326 80.7
Lalb_Chr04g0259741 Lupinus albus HOM05D005315 ORTHO05D006589 3.5e-130 468.8 318 80.2
arahy.Tifrunner.gnm1.ann1.NZ3ZKL Arachis hypogaea HOM05D005315 ORTHO05D006589 2.1e-127 459.5 327 76.8
arahy.Tifrunner.gnm1.ann1.EUG2WG Arachis hypogaea HOM05D005315 ORTHO05D006589 6.1e-127 458.0 327 76.8
QL10p015953 Quercus lobata HOM05D005315 ORTHO05D006589 1.4e-126 456.8 326 75.8
Prupe.2G090200 Prunus persica HOM05D005315 ORTHO05D006589 2.2e-124 449.5 323 74.6
Prupe.8G254400 Prunus persica HOM05D005315 ORTHO05D006589 2.8e-124 449.1 323 74.0
MD03G1278200 Malus domestica HOM05D005315 ORTHO05D006589 4.8e-124 448.4 308 76.9
Cfa006013 Carpinus fangiana HOM05D005315 ORTHO05D006589 1.4e-123 446.8 323 74.6
Duzib138G1810 Durio zibethinus HOM05D005315 ORTHO05D006589 2.7e-122 442.6 301 76.7
MD11G1300200 Malus domestica HOM05D005315 ORTHO05D006589 1.3e-121 440.3 309 74.8
Manes.05G066800 Manihot esculenta HOM05D005315 ORTHO05D006589 8.5e-121 437.6 327 70.9
Thecc.01G292600 Theobroma cacao HOM05D005315 ORTHO05D006589 3.2e-120 435.6 298 76.5
Gorai.004G141000 Gossypium raimondii HOM05D005315 ORTHO05D006589 7.2e-120 434.5 301 76.1
CSS0027333 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 9.4e-120 434.1 326 72.7
Sed0018657 Sechium edule HOM05D005315 ORTHO05D006589 9.4e-120 434.1 325 70.5
Gohir.D08G137700 Gossypium hirsutum HOM05D005315 ORTHO05D006589 1.6e-119 433.3 301 76.1
Ciclev10021031m.g Citrus clementina HOM05D005315 ORTHO05D006589 2.1e-119 433.0 323 73.1
QL12p024404 Quercus lobata HOM05D005315 ORTHO05D006589 2.7e-119 432.6 326 73.3
CSS0021362 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 3.6e-119 432.2 326 72.4
Gohir.A08G116900 Gossypium hirsutum HOM05D005315 ORTHO05D006589 4.7e-119 431.8 301 75.1
Manes.01G214900 Manihot esculenta HOM05D005315 ORTHO05D006589 6.1e-119 431.4 321 71.7
Eucgr.K03447 Eucalyptus grandis HOM05D005315 ORTHO05D006589 8.0e-119 431.0 320 72.2
ClCG09G006320 Citrullus lanatus HOM05D005315 ORTHO05D006589 3.0e-118 429.1 325 70.5
RcHm_v2.0_Chr6g0292881 Rosa chinensis HOM05D005315 ORTHO05D006589 5.2e-118 428.3 326 71.2
Potri.014G134100 Populus trichocarpa HOM05D005315 ORTHO05D006589 8.8e-118 427.6 323 71.8
Atru.chr4.1184 Acer truncatum HOM05D005315 ORTHO05D006589 1.2e-117 427.2 323 71.2
MELO3C016054.2 Cucumis melo HOM05D005315 ORTHO05D006589 4.4e-117 425.2 325 70.2
Dinv33007 Davidia involucrata HOM05D005315 ORTHO05D006589 5.7e-117 424.9 295 76.3
Nitab4.5_0008505g0010 Nicotiana tabacum HOM05D005315 ORTHO05D006589 5.7e-117 424.9 308 74.0
FAN20G2356 Fragaria x ananassa HOM05D005315 ORTHO05D006589 2.8e-116 422.5 324 70.7
CANSAT25G3366 Cannabis sativa HOM05D005315 ORTHO05D006589 6.3e-116 421.4 324 70.4
CAN.G276.6 Capsicum annuum HOM05D005315 ORTHO05D006589 1.1e-115 420.6 328 71.6
Haze_04835 Corylus avellana HOM05D005315 ORTHO05D006589 2.4e-115 419.5 314 72.6
Sabra14G0100000 Salix brachista HOM05D005315 ORTHO05D006589 5.4e-115 418.3 323 70.0
COL.COLO4_08010 Corchorus olitorius HOM05D005315 ORTHO05D006589 9.1e-115 417.5 289 74.0
DCAR_003965 Daucus carota HOM05D005315 ORTHO05D006589 9.1e-115 417.5 326 70.6
Lj6A760G44 Lonicera japonica HOM05D005315 ORTHO05D006589 1.2e-114 417.2 310 73.2
AUR62029964 Chenopodium quinoa HOM05D005315 ORTHO05D006589 1.6e-114 416.8 327 69.7
Peaxi162Scf01132g00228 Petunia axillaris HOM05D005315 ORTHO05D006589 2.0e-114 416.4 326 70.6
Nitab4.5_0013619g0010 Nicotiana tabacum HOM05D005315 ORTHO05D008125 7.7e-114 414.5 327 70.0
AUR62002550 Chenopodium quinoa HOM05D005315 ORTHO05D006589 1.0e-113 414.1 327 68.8
Sopen04g023370 Solanum pennellii HOM05D005315 ORTHO05D006589 1.0e-113 414.1 332 70.5
Sc24g0001270 Simmondsia chinensis HOM05D005315 ORTHO05D006589 2.2e-113 412.9 323 69.0
Nitab4.5_0000492g0210 Nicotiana tabacum HOM05D005315 ORTHO05D006589 2.9e-113 412.5 327 71.6
Sed0022397 Sechium edule HOM05D005315 ORTHO05D006589 5.0e-113 411.8 325 68.9
Nn1g09466 Nelumbo nucifera HOM05D005315 ORTHO05D006589 1.1e-112 410.6 334 66.8
Oeu028371.1 Olea europaea HOM05D005315 ORTHO05D006589 2.5e-112 409.5 325 67.7
Solyc04g053080.4 Solanum lycopersicum HOM05D005315 ORTHO05D006589 2.5e-112 409.5 330 70.3
PSO210G5824 Papaver somniferum HOM05D005315 ORTHO05D006589 4.2e-112 408.7 320 67.8
TWI59G0122 Tripterygium wilfordii HOM05D005315 ORTHO05D006589 4.2e-112 408.7 326 70.2
Nitab4.5_0000431g0150 Nicotiana tabacum HOM05D005315 ORTHO05D006589 7.2e-112 407.9 327 69.4
PSO170G6158 Papaver somniferum HOM05D005315 ORTHO05D006589 7.2e-112 407.9 320 68.1
Hund18046 Selenicereus undatus HOM05D005315 ORTHO05D006589 7.2e-112 407.9 308 70.8
Hma1.2p1_0399F.1_g144060 Hydrangea macrophylla HOM05D005315 ORTHO05D006589 2.7e-111 406.0 283 73.5
MSTRG.16494 Avicennia marina HOM05D005315 ORTHO05D006589 3.6e-111 405.6 323 66.6
CsaV3_7G028820 Cucumis sativus L. HOM05D005315 ORTHO05D006589 6.1e-111 404.8 331 67.1
EL10Ac1g00719 Beta vulgaris HOM05D005315 ORTHO05D006589 2.3e-110 402.9 326 69.0
CiPaw.07G101900 Carya illinoinensis HOM05D005315 ORTHO05D006589 2.3e-110 402.9 323 70.0
PGR044G2036 Punica granatum HOM05D005315 ORTHO05D006589 2.2e-108 396.4 318 69.5
Aqoxy2G03077 Aquilegia oxysepala HOM05D005315 ORTHO05D006589 3.7e-108 395.6 319 68.0
PGSC0003DMG400016587 Solanum tuberosum HOM05D005315 ORTHO05D006589 4.9e-108 395.2 280 75.4
Aa31LG10G16750 Aethionema arabicum HOM05D005315 ORTHO05D006589 1.2e-103 380.6 308 66.9
Thhalv10006094m.g Eutrema salsugineum HOM05D005315 ORTHO05D006589 2.8e-103 379.4 324 63.9
Gorai.008G008700 Gossypium raimondii HOM05D005315 ORTHO05D006589 6.1e-103 378.3 324 67.3
FvH4_2g14201 Fragaria vesca HOM05D005315 ORTHO05D006589 1.0e-102 377.5 324 66.4
FAN24G2129 Fragaria x ananassa HOM05D005315 ORTHO05D006589 1.0e-102 377.5 324 66.4
Sp5g00580 Schrenkiella parvula HOM05D005315 ORTHO05D006589 1.0e-102 377.5 324 63.9
SGA_v2.0_scaffold304G47908 Striga asiatica HOM05D005315 ORTHO05D006589 1.4e-102 377.1 325 64.0
ATR0665G323 Amborella trichopoda HOM05D005315 ORTHO05D006589 6.8e-102 374.8 311 66.9
vmacro02497 Vaccinium macrocarpon HOM05D005315 ORTHO05D006589 1.5e-101 373.6 327 65.1
BcaC02g10325 Brassica carinata HOM05D005315 ORTHO05D006589 2.6e-101 372.9 315 64.4
C04p30300 Brassica napus HOM05D005315 ORTHO05D006589 2.6e-101 372.9 315 64.4
BolC4t24563H Brassica oleracea HOM05D005315 ORTHO05D006589 2.6e-101 372.9 315 64.4
Duzib133G0389 Durio zibethinus HOM05D005315 ORTHO05D006589 9.8e-101 370.9 305 67.5
BraA04t15762Z Brassica rapa HOM05D005315 ORTHO05D006589 1.7e-100 370.2 322 63.7
Cpa.g.sc9.185 Carica papaya HOM05D005315 ORTHO05D006589 2.2e-100 369.8 306 68.3
A04p00430 Brassica napus HOM05D005315 ORTHO05D006589 2.9e-100 369.4 322 63.7
BcaB02g08087 Brassica carinata HOM05D005315 ORTHO05D006589 8.3e-100 367.9 322 64.0
Carub.0005s2959 Capsella rubella HOM05D005315 ORTHO05D006589 1.8e-99 366.7 321 63.2
HPP92_002250 Vanilla planifolia HOM05D005315 ORTHO05D006589 4.1e-99 365.5 303 64.4
A09p54790 Brassica napus HOM05D005315 ORTHO05D006589 7.0e-99 364.8 320 63.1
BraA09t40888Z Brassica rapa HOM05D005315 ORTHO05D006589 7.0e-99 364.8 320 63.1
Rhsim13G0016000 Rhododendron simsii HOM05D005315 ORTHO05D006589 9.2e-99 364.4 327 64.8
Zm00001eb212540 Zea mays HOM05D005315 ORTHO05D006589 1.2e-98 364.0 324 62.0
AT3G62940 Arabidopsis thaliana HOM05D005315 ORTHO05D006589 2.7e-98 362.8 328 61.6
C08p37650 Brassica napus HOM05D005315 ORTHO05D006589 4.6e-98 362.1 319 63.6
BolC8t51348H Brassica oleracea HOM05D005315 ORTHO05D006589 1.7e-97 360.1 319 63.3
CARHR173230 Cardamine hirsuta HOM05D005315 ORTHO05D006589 1.5e-96 357.1 312 63.1
Migut.B00780 Erythranthe guttata HOM05D005315 ORTHO05D006589 1.9e-96 356.7 326 61.0
HanXRQChr12g0357681 Helianthus annuus HOM05D005315 ORTHO05D006589 3.6e-95 352.4 299 65.2
unitig_26.g9038 Utricularia gibba HOM05D005315 ORTHO05D006589 6.2e-95 351.7 316 62.0
THA.LOC104802209 Tarenaya hassleriana HOM05D005315 ORTHO05D006589 1.5e-93 347.1 290 65.9
Hma1.2p1_0209F.1_g088950 Hydrangea macrophylla HOM05D005315 ORTHO05D006589 7.5e-93 344.7 294 64.3
AL5G45720 Arabidopsis lyrata HOM05D005315 ORTHO05D006589 1.7e-92 343.6 324 60.2
Cc07_g16220 Coffea canephora HOM05D005315 ORTHO05D006589 1.4e-91 340.5 325 61.2
Gohir.D12G008800 Gossypium hirsutum HOM05D005315 ORTHO05D006589 3.2e-91 339.3 267 68.2
MBI02_g41662_MAGBIO Magnolia biondii HOM05D005315 ORTHO05D006589 3.5e-90 335.9 302 61.9
Nn1g09463 Nelumbo nucifera HOM05D005315 ORTHO05D006589 2.3e-89 333.2 225 73.3
SEGI_33648 Sequoiadendron giganteum HOM05D005315 ORTHO05D006589 2.3e-89 333.2 320 59.1
ATR0564G214 Amborella trichopoda HOM05D005315 ORTHO05D006589 6.6e-89 331.6 304 62.5
Os04g0619500 Oryza sativa ssp. japonica HOM05D005315 ORTHO05D006589 3.6e-87 325.9 313 57.5
ECA247G4081 Erigeron canadensis HOM05D005315 ORTHO05D006589 1.4e-86 323.9 329 57.8
ECA234G3298 Erigeron canadensis HOM05D005315 ORTHO05D006589 2.3e-86 323.2 329 58.1
Lsat_1_v5_gn_5_90141 Lactuca sativa HOM05D005315 ORTHO05D006589 3.0e-81 306.2 276 61.6
Mapoly0036s0154 Marchantia polymorpha HOM05D005315 ORTHO05D006589 1.1e-80 304.3 301 56.5
Actinidia32232 Actinidia chinensis HOM05D005315 ORTHO05D006589 4.3e-80 302.4 279 62.7
AagrBONN_evm.TU.Sc2ySwM_228.5144 Anthoceros agrestis HOM05D005315 ORTHO05D006589 2.9e-76 289.7 314 52.2
Ah.12g052040 Amaranthus hybridus HOM05D005315 ORTHO05D006589 2.7e-74 283.1 325 51.4
GSVIVG01010986001 Vitis vinifera HOM05D005315 ORTHO05D006589 6.0e-74 282.0 325 55.7
SMO196G0226 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 6.6e-73 278.5 305 53.4
CBR_g50012 Chara braunii HOM05D005315 ORTHO05D006589 2.1e-71 273.5 315 51.1
Pp3c15_4060 Physcomitrium patens HOM05D005315 ORTHO05D006589 4.9e-68 262.3 310 49.7
EL10Ac3g06247 Beta vulgaris HOM05D005315 ORTHO05D006589 2.0e-61 240.4 223 65.9
RcHm_v2.0_Chr3g0496291 Rosa chinensis HOM05D005315 ORTHO05D006589 1.3e-60 237.7 229 58.1
HanXRQChr16g0511311 Helianthus annuus HOM05D005315 ORTHO05D006589 1.9e-59 233.8 221 57.9
CDE04G3078 Ceratophyllum demersum HOM05D005315 ORTHO05D006589 6.7e-57 225.3 223 56.5
MBI13_g04790_MAGBIO Magnolia biondii HOM05D005315 ORTHO05D006589 6.7e-57 225.3 162 69.8
TAR369G0925 Trochodendron aralioides HOM05D005315 ORTHO05D006589 2.4e-51 206.8 134 75.4
Sc24g0001280 Simmondsia chinensis HOM05D005315 ORTHO05D006589 3.2e-51 206.5 131 74.0
BcaB02g07311 Brassica carinata HOM05D005315 ORTHO05D006589 4.5e-45 186.0 228 54.8
arahy.Tifrunner.gnm1.ann1.UST23B Arachis hypogaea HOM05D005315 ORTHO05D006589 2.1e-42 177.2 294 43.9
RcHm_v2.0_Chr5g0001231 Rosa chinensis HOM05D005315 ORTHO05D006589 1.9e-40 170.6 195 48.2
Cre01.g028550 Chlamydomonas reinhardtii HOM05D005315 ORTHO05D006589 3.3e-40 169.9 311 39.5
RcHm_v2.0_Chr6g0247511 Rosa chinensis HOM05D005315 ORTHO05D006589 9.6e-40 168.3 149 65.8
SMO196G0254 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 1.1e-38 164.9 199 49.7
PRCOL_00001709 Prasinoderma coloniale HOM05D005315 ORTHO05D006589 6.9e-38 162.2 315 37.1
SMO234G0054 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 6.9e-30 135.6 140 52.9
SHI20216 Sapria himalayana HOM05D005315 ORTHO05D006589 3.4e-29 133.3 238 36.1
MCO04G021 Micromonas commoda HOM05D005315 ORTHO05D006589 3.8e-28 129.8 310 34.5
CSS0017761 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 4.4e-16 89.7 106 60.4
CSS0041271 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 4.4e-16 89.7 105 60.0
Cfa025660 Carpinus fangiana HOM05D005315 ORTHO05D006589 5.3e-14 82.8 341 27.3
BolC3t16814H Brassica oleracea HOM05D053812 ORTHO05D039671 8.0e-10 68.9 147 30.6
Eucgr.H02068 Eucalyptus grandis HOM05D006446 ORTHO05D007832 3.3e-08 63.5 166 28.9
BolC9t54014H Brassica oleracea HOM05D006446 ORTHO05D007832 5.7e-08 62.8 199 28.1
BcaC04g23194 Brassica carinata HOM05D006446 ORTHO05D007832 1.3e-07 61.6 156 31.4
C09p11250 Brassica napus HOM05D006446 ORTHO05D007832 2.2e-07 60.8 199 29.1
ATR0762G017 Amborella trichopoda HOM05D006446 ORTHO05D007832 2.8e-07 60.5 159 30.8
THA.LOC104827244 Tarenaya hassleriana HOM05D006446 ORTHO05D007832 3.7e-07 60.1 198 29.3
Ah.03g145380 Amaranthus hybridus HOM05D006446 ORTHO05D007832 8.2e-07 58.9 156 29.5
BcaB04g20072 Brassica carinata HOM05D006446 ORTHO05D007832 1.1e-06 58.5 199 27.1
Carub.0008s2734 Capsella rubella HOM05D006446 ORTHO05D007832 1.4e-06 58.2 198 27.3
ECA238G0447 Erigeron canadensis HOM05D002135 ORTHO05D002134 1.8e-06 57.8 155 29.0
unitig_899.g14957 Utricularia gibba HOM05D004616 ORTHO05D005860 1.8e-06 57.8 212 26.9
ATR0820G275 Amborella trichopoda HOM05D004616 ORTHO05D005860 2.4e-06 57.4 173 28.3
BraA09t36599Z Brassica rapa HOM05D006446 ORTHO05D007832 2.4e-06 57.4 199 27.6
PRCOL_00000140 Prasinoderma coloniale HOM05D005315 ORTHO05D007832 2.4e-06 57.4 200 27.5
CAN.G919.39 Capsicum annuum HOM05D004616 ORTHO05D005860 3.1e-06 57.0 211 25.6
A09p09520 Brassica napus HOM05D006446 ORTHO05D007832 4.1e-06 56.6 198 26.8
Sp2g29500 Schrenkiella parvula HOM05D006446 ORTHO05D007832 4.1e-06 56.6 198 27.8
AL8G44180 Arabidopsis lyrata HOM05D006446 ORTHO05D007832 5.3e-06 56.2 198 27.8
AT5G67170 Arabidopsis thaliana HOM05D006446 ORTHO05D007832 5.3e-06 56.2 198 27.8
Ciclev10032126m.g Citrus clementina HOM05D002135 ORTHO05D002134 5.3e-06 56.2 124 32.3
Lsat_1_v5_gn_5_164060 Lactuca sativa HOM05D002135 ORTHO05D002134 5.3e-06 56.2 159 28.9
PRCOL_00000381 Prasinoderma coloniale HOM05D005790 ORTHO05D007832 7.0e-06 55.8 116 32.8
SGA_v2.0_scaffold100G29603 Striga asiatica HOM05D004616 ORTHO05D005860 7.0e-06 55.8 158 29.1
SGA_v2.0_scaffold22G09840 Striga asiatica HOM05D004616 ORTHO05D005860 7.0e-06 55.8 152 28.3
arahy.Tifrunner.gnm1.ann1.CC10Q4 Arachis hypogaea HOM05D002135 ORTHO05D002134 9.1e-06 55.5 156 29.5
arahy.Tifrunner.gnm1.ann1.KS9I1Q Arachis hypogaea HOM05D002135 ORTHO05D002134 9.1e-06 55.5 156 29.5
Hund24758 Selenicereus undatus HOM05D002135 ORTHO05D002134 9.1e-06 55.5 157 26.8


User provided reference genes

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