Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 1.0e-24 115.9 60 100.0
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 2.3e-16 88.2 62 80.6
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 8.9e-16 86.3 48 91.7
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 9.8e-15 82.8 47 87.2
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 1.4e-13 79.0 47 85.1
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 1.2e-12 75.9 54 72.2
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 6.0e-12 73.6 47 80.9
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 1.3e-11 72.4 69 62.3
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 1.3e-11 72.4 47 78.7
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 4.3e-10 67.4 64 62.5
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 4.3e-10 67.4 54 64.8
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 5.6e-10 67.0 56 66.1
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 5.6e-10 67.0 63 66.7
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.6e-09 65.5 56 66.1
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 1.6e-09 65.5 56 66.1
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.6e-09 65.5 56 66.1
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.6e-09 65.5 56 66.1
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 2.1e-09 65.1 52 63.5
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 2.1e-09 65.1 63 65.1
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 3.6e-09 64.3 55 65.5
Lalb_Chr20g0107771 Lupinus albus HOM05D007833 ORTHO05D009855 3.6e-09 64.3 58 63.8
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 4.7e-09 63.9 52 65.4
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 6.2e-09 63.5 56 64.3
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 6.2e-09 63.5 56 64.3
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 6.2e-09 63.5 55 63.6
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 6.2e-09 63.5 53 62.3
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 6.2e-09 63.5 51 62.7
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 8.1e-09 63.2 55 65.5
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 1.1e-08 62.8 50 64.0
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 2.3e-08 61.6 55 63.6
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 2.3e-08 61.6 46 65.2
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 3.1e-08 61.2 42 71.4
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 3.1e-08 61.2 65 56.9
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 4.0e-08 60.8 57 59.6
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 4.0e-08 60.8 48 64.6
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 4.0e-08 60.8 66 57.6
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 5.2e-08 60.5 50 66.0
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 6.8e-08 60.1 58 56.9
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 6.8e-08 60.1 48 62.5
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 6.8e-08 60.1 48 62.5
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 6.8e-08 60.1 52 59.6
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 8.9e-08 59.7 50 58.0
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 8.9e-08 59.7 59 57.6
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 1.2e-07 59.3 51 60.8
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 1.5e-07 58.9 46 63.0
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 2.0e-07 58.5 55 58.2
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.0e-07 58.5 47 61.7
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 2.0e-07 58.5 55 61.8
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 2.0e-07 58.5 59 55.9
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 2.0e-07 58.5 43 69.8
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 2.6e-07 58.2 57 57.9
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 2.6e-07 58.2 44 65.9
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 2.6e-07 58.2 62 58.1
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 2.6e-07 58.2 43 65.1
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.6e-07 58.2 54 63.0
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 2.6e-07 58.2 54 57.4
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 3.4e-07 57.8 50 62.0
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 3.4e-07 57.8 61 54.1
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 3.4e-07 57.8 46 60.9
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 4.4e-07 57.4 41 70.7
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 4.4e-07 57.4 50 60.0
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 4.4e-07 57.4 43 67.4
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 4.4e-07 57.4 41 65.9
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 4.4e-07 57.4 45 66.7
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 5.8e-07 57.0 43 67.4
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 5.8e-07 57.0 50 60.0
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 5.8e-07 57.0 54 55.6
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 5.8e-07 57.0 63 55.6
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 7.6e-07 56.6 50 60.0
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 9.9e-07 56.2 46 63.0
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 9.9e-07 56.2 48 58.3
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 1.3e-06 55.8 48 58.3
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 1.7e-06 55.5 55 58.2
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.7e-06 55.5 43 62.8
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.7e-06 55.5 50 62.0
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 2.2e-06 55.1 62 56.5
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 2.2e-06 55.1 55 58.2
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 3.7e-06 54.3 61 52.5
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 6.4e-06 53.5 58 51.7
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 8.4e-06 53.1 45 66.7


User provided reference genes

Program Settings