Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08439_v3 Cicer arietinum L. HOM05D007428 ORTHO05D009308 5.9e-42 173.7 83 100.0
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 8.3e-12 73.6 59 64.4
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 8.3e-12 73.6 58 63.8
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 2.7e-10 68.6 58 60.3
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 4.5e-10 67.8 61 57.4
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 1.3e-09 66.2 59 57.6
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 1.7e-09 65.9 61 55.7
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 2.2e-09 65.5 66 48.5
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 5.0e-09 64.3 59 54.2
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 6.5e-09 63.9 60 56.7
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 6.5e-09 63.9 61 50.8
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 8.5e-09 63.5 59 55.9
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 1.1e-08 63.2 64 51.6
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 1.5e-08 62.8 59 54.2
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.9e-08 62.4 59 55.9
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 3.2e-08 61.6 59 50.8
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 3.2e-08 61.6 59 55.9
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 3.2e-08 61.6 59 55.9
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 3.2e-08 61.6 59 54.2
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 4.2e-08 61.2 59 55.9
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 4.2e-08 61.2 59 54.2
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 4.2e-08 61.2 60 55.0
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 5.5e-08 60.8 61 50.8
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 5.5e-08 60.8 61 50.8
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 5.5e-08 60.8 58 50.0
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 7.2e-08 60.5 59 52.5
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 1.2e-07 59.7 59 52.5
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 1.2e-07 59.7 61 50.8
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.6e-07 59.3 61 52.5
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 1.6e-07 59.3 64 46.9
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 2.1e-07 58.9 62 53.2
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.1e-07 58.9 62 53.2
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.1e-07 58.9 62 53.2
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 2.1e-07 58.9 62 53.2
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 2.1e-07 58.9 64 46.9
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 2.1e-07 58.9 62 53.2
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 2.7e-07 58.5 61 47.5
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 3.6e-07 58.2 61 50.8
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 3.6e-07 58.2 59 50.8
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 4.7e-07 57.8 61 52.5
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 4.7e-07 57.8 58 51.7
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 4.7e-07 57.8 61 49.2
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 4.7e-07 57.8 61 49.2
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 6.1e-07 57.4 68 44.1
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 8.0e-07 57.0 67 46.3
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 8.0e-07 57.0 59 50.8
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 8.0e-07 57.0 61 50.8
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 1.4e-06 56.2 61 49.2
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 1.8e-06 55.8 55 49.1
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 1.8e-06 55.8 59 50.8
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 1.8e-06 55.8 59 50.8
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.3e-06 55.5 59 49.2
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 2.3e-06 55.5 59 49.2
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 3.0e-06 55.1 61 52.5
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 4.0e-06 54.7 61 47.5
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 4.0e-06 54.7 59 45.8
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 4.0e-06 54.7 64 43.8
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 5.2e-06 54.3 61 47.5
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 5.2e-06 54.3 61 47.5
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 5.2e-06 54.3 58 48.3
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 5.2e-06 54.3 61 47.5
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 5.2e-06 54.3 61 49.2
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 5.2e-06 54.3 59 49.2
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 5.2e-06 54.3 64 45.3
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 6.8e-06 53.9 61 47.5
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 6.8e-06 53.9 58 48.3
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 6.8e-06 53.9 55 50.9
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 6.8e-06 53.9 61 47.5
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 8.8e-06 53.5 58 43.1


User provided reference genes

Program Settings