Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 1.4e-93 346.3 178 100.0
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 2.8e-73 278.9 183 83.1
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 1.4e-72 276.6 180 83.3
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 7.6e-71 270.8 181 82.3
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 3.8e-70 268.5 182 80.2
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 6.4e-70 267.7 181 81.2
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 2.4e-69 265.8 186 77.4
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 3.2e-69 265.4 183 79.2
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 2.3e-67 259.2 179 81.0
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 1.5e-66 256.5 178 77.5
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 3.3e-66 255.4 180 79.4
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 2.0e-63 246.1 183 74.3
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 8.4e-62 240.7 181 75.1
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 1.9e-61 239.6 178 74.7
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 4.2e-61 238.4 178 73.6
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 5.4e-61 238.0 178 75.3
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.2e-60 236.9 183 73.8
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 1.2e-60 236.9 183 73.8
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 1.6e-60 236.5 178 73.6
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 1.6e-60 236.5 178 73.6
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 1.6e-60 236.5 178 73.6
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.0e-60 234.6 179 74.9
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 7.8e-60 234.2 179 73.2
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 1.7e-59 233.0 180 71.7
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 3.0e-59 232.3 184 71.7
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 3.0e-59 232.3 180 72.8
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 3.9e-59 231.9 179 72.6
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 5.1e-59 231.5 183 73.2
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 5.1e-59 231.5 179 72.1
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 6.6e-59 231.1 183 70.5
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 6.6e-59 231.1 181 71.3
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 8.7e-59 230.7 185 71.4
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 8.7e-59 230.7 182 70.3
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 8.7e-59 230.7 183 71.6
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 8.7e-59 230.7 182 72.0
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 1.5e-58 229.9 179 73.2
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 1.9e-58 229.6 179 71.5
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 3.3e-58 228.8 179 71.5
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 3.3e-58 228.8 179 73.2
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 5.6e-58 228.0 182 71.4
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 5.6e-58 228.0 182 71.4
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 7.3e-58 227.6 149 78.5
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 9.6e-58 227.3 179 71.5
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 9.6e-58 227.3 159 77.4
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.6e-57 226.5 150 78.7
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 3.6e-57 225.3 181 70.2
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 4.8e-57 224.9 181 71.8
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 4.8e-57 224.9 179 68.2
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 8.1e-57 224.2 157 75.2
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 8.1e-57 224.2 181 69.6
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 1.1e-56 223.8 167 72.5
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 1.1e-56 223.8 182 69.8
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 1.1e-56 223.8 186 67.7
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 1.4e-56 223.4 186 69.9
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 1.4e-56 223.4 186 69.9
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.4e-56 223.4 150 78.0
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 3.1e-56 222.2 183 67.8
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 3.1e-56 222.2 179 69.8
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 4.0e-56 221.9 178 70.2
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 4.0e-56 221.9 181 66.3
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 5.3e-56 221.5 186 69.4
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 2.0e-55 219.5 161 72.7
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 2.0e-55 219.5 168 70.2
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 2.0e-55 219.5 161 72.7
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 2.0e-55 219.5 161 72.7
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 2.0e-55 219.5 168 70.2
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 2.6e-55 219.2 181 68.0
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 2.6e-55 219.2 184 67.4
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 5.8e-55 218.0 185 69.2
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 5.8e-55 218.0 182 68.7
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 7.6e-55 217.6 172 69.2
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 7.6e-55 217.6 161 72.7
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 7.6e-55 217.6 185 68.6
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 7.6e-55 217.6 172 69.2
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 7.6e-55 217.6 181 69.1
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 7.6e-55 217.6 183 65.6
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 1.3e-54 216.9 182 67.6
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 2.9e-54 215.7 185 68.1
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 6.4e-54 214.5 178 66.9
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.1e-53 213.8 181 64.6
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.9e-53 213.0 182 64.8
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 1.9e-53 213.0 189 65.1
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 2.4e-53 212.6 184 66.3
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 3.2e-53 212.2 186 65.1
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 3.2e-53 212.2 142 76.1
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 5.4e-53 211.5 185 63.2
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 7.1e-53 211.1 166 72.9
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 7.1e-53 211.1 179 67.0
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.2e-52 210.3 180 65.0
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 1.2e-52 210.3 196 63.3
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.6e-52 209.9 185 65.9
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.6e-52 209.9 186 66.7
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 2.1e-52 209.5 183 65.0
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.5e-52 208.8 160 71.9
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 3.5e-52 208.8 166 70.5
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 4.6e-52 208.4 150 72.0
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 6.0e-52 208.0 190 62.1
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 1.0e-51 207.2 180 64.4
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 1.8e-51 206.5 179 65.9
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 1.8e-51 206.5 181 64.6
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 2.3e-51 206.1 179 65.9
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 3.0e-51 205.7 184 65.2
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 3.9e-51 205.3 180 65.6
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 5.1e-51 204.9 187 64.2
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 6.7e-51 204.5 114 86.8
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 1.9e-50 203.0 179 65.9
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 3.3e-50 202.2 183 62.3
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 2.1e-49 199.5 178 62.9
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 2.8e-49 199.1 141 72.3
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 4.8e-49 198.4 189 59.3
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 4.0e-48 195.3 131 77.9
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 5.3e-48 194.9 163 65.6
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 6.9e-48 194.5 152 73.7
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 2.0e-47 193.0 291 46.4
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 7.6e-47 191.0 179 62.6
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 3.8e-46 188.7 180 60.6
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 6.4e-46 188.0 291 45.0
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 6.4e-46 188.0 162 64.2
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 3.5e-44 182.2 143 63.6
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 4.8e-41 171.8 162 61.7
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 7.6e-39 164.5 134 64.9
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 2.2e-38 162.9 152 58.6
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 2.9e-38 162.5 188 56.4
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 9.3e-37 157.5 216 50.9
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 6.0e-36 154.8 149 59.7
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 1.4e-32 143.7 81 88.9
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.6e-31 139.4 87 82.8
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 1.3e-30 137.1 82 86.6
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 2.2e-30 136.3 87 79.3
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 6.5e-30 134.8 87 77.0
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 8.5e-30 134.4 141 50.4
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 9.3e-29 131.0 82 80.5
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 9.3e-29 131.0 86 81.4
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 1.2e-28 130.6 169 51.5
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 4.1e-24 115.5 97 57.7
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 3.8e-22 109.0 100 55.0
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.4e-16 90.5 95 58.9
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 4.1e-16 89.0 86 59.3
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 6.9e-16 88.2 105 56.2
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 6.5e-14 81.6 54 75.9
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 1.1e-13 80.9 96 54.2
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 4.7e-12 75.5 54 74.1
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 1.4e-08 63.9 42 69.0
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 1.8e-08 63.5 69 44.9
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 3.8e-06 55.8 81 49.4
Pp3c6_9300 Physcomitrium patens HOM05D005249 ORTHO05D006457 6.5e-06 55.1 68 41.2


User provided reference genes

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