Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 1.3e-301 1038.9 518 100.0
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 1.7e-171 606.7 572 60.8
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 1.3e-123 447.6 589 48.0
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 1.3e-118 431.0 630 42.2
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 3.0e-96 356.7 558 41.2
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 5.2e-96 355.9 530 42.3
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 3.7e-94 349.7 578 40.5
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 8.6e-91 338.6 608 38.2
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 3.3e-90 336.7 528 44.3
arahy.Tifrunner.gnm1.ann1.L07F2C Arachis hypogaea HOM05D007742 ORTHO05D004072 1.4e-72 278.1 566 34.6
arahy.Tifrunner.gnm1.ann1.H02ZFL Arachis hypogaea HOM05D007742 ORTHO05D004072 5.8e-71 272.7 568 34.5
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 3.5e-68 263.5 529 36.5
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 3.2e-61 240.4 539 33.8
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 9.3e-61 238.8 532 33.5
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 9.0e-56 222.2 278 42.8
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 6.2e-49 199.5 197 49.2
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 3.7e-33 147.1 591 24.0
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 8.2e-33 146.0 521 26.9
Glyma.16G046800 Glycine max HOM05D007742 ORTHO05D004072 2.2e-30 137.9 351 33.0
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 6.5e-30 136.3 536 27.1
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 5.5e-29 133.3 541 26.2
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 7.9e-28 129.4 564 25.9
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 1.1e-26 125.6 626 24.4
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 3.7e-25 120.6 632 24.5
Medtr2g078580 Medicago truncatula HOM05D007742 ORTHO05D004072 6.3e-25 119.8 119 58.0
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 5.3e-24 116.7 116 52.6
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 3.4e-23 114.0 549 25.5
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 4.5e-23 113.6 525 25.7
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 2.9e-22 110.9 527 24.5
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 3.8e-22 110.5 528 23.9
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.6e-20 105.1 145 40.0
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 3.6e-20 104.0 118 38.1
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 7.9e-20 102.8 134 33.6
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 3.0e-19 100.9 116 38.8
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 3.9e-19 100.5 122 36.1
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 5.1e-19 100.1 414 23.2
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 6.7e-19 99.8 133 39.1
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 1.1e-18 99.0 146 34.9
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 1.5e-18 98.6 123 39.8
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 2.0e-18 98.2 133 38.3
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 7.4e-18 96.3 106 39.6
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 7.4e-18 96.3 151 34.4
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.7e-17 95.1 112 40.2
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 2.2e-17 94.7 432 25.0
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 2.8e-17 94.4 629 23.5
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 4.8e-17 93.6 472 25.2
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 4.8e-17 93.6 118 36.4
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 6.3e-17 93.2 124 33.1
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 6.3e-17 93.2 124 33.1
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 1.1e-16 92.4 124 33.1
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 1.4e-16 92.0 124 33.1
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 3.1e-16 90.9 139 33.8
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 5.3e-16 90.1 115 37.4
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.2e-15 89.0 222 30.6
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 2.0e-15 88.2 272 30.5
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 3.4e-15 87.4 132 32.6
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 3.4e-15 87.4 132 32.6
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 5.9e-15 86.7 117 39.3
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 7.7e-15 86.3 552 22.8
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 2.9e-14 84.3 493 22.7
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 1.9e-13 81.6 129 34.1
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 1.9e-13 81.6 113 33.6
Sabra09G0085900 Salix brachista HOM05D007742 ORTHO05D004072 2.5e-13 81.3 458 22.7
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.5e-13 81.3 113 35.4
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 4.2e-13 80.5 153 34.0
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 4.2e-13 80.5 116 35.3
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 5.5e-13 80.1 153 34.0
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 5.5e-13 80.1 153 34.0
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 2.7e-12 77.8 132 33.3
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 3.6e-12 77.4 155 36.1
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 4.7e-12 77.0 116 35.3
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 8.0e-12 76.3 610 20.2
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 8.0e-12 76.3 145 35.2
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 8.0e-12 76.3 141 35.5
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 3.9e-11 73.9 122 32.0
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 5.2e-11 73.6 152 29.6
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 6.7e-11 73.2 145 31.0
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 8.8e-11 72.8 138 28.3
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 8.8e-11 72.8 142 28.2
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.1e-10 72.4 112 33.0
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 1.1e-10 72.4 517 22.2
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 2.0e-10 71.6 166 29.5
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 4.4e-10 70.5 105 34.3
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 4.4e-10 70.5 105 34.3
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 4.4e-10 70.5 145 32.4
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 4.4e-10 70.5 161 32.9
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 5.7e-10 70.1 112 32.1
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 7.4e-10 69.7 97 35.1
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 9.7e-10 69.3 150 29.3
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 9.7e-10 69.3 150 29.3
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 9.7e-10 69.3 495 22.6
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 1.7e-09 68.6 144 26.4
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 1.7e-09 68.6 110 32.7
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 2.2e-09 68.2 134 29.1
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 2.2e-09 68.2 253 22.1
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 2.2e-09 68.2 211 27.0
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 2.8e-09 67.8 142 34.5
QL02p069122 Quercus lobata HOM05D007742 ORTHO05D004072 4.8e-09 67.0 162 31.5
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 4.8e-09 67.0 125 32.0
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 6.3e-09 66.6 117 29.9
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 6.3e-09 66.6 118 31.4
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 8.2e-09 66.2 170 28.8
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 8.2e-09 66.2 133 29.3
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 1.1e-08 65.9 184 26.1
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 1.1e-08 65.9 184 26.1
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 1.4e-08 65.5 135 28.1
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 3.1e-08 64.3 133 27.1
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 3.1e-08 64.3 133 27.1
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 3.1e-08 64.3 142 30.3
DCAR_008617 Daucus carota HOM05D007742 ORTHO05D004072 4.1e-08 63.9 136 28.7
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 5.3e-08 63.5 113 28.3
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 5.3e-08 63.5 133 27.1
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 7.0e-08 63.2 121 28.9
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 9.1e-08 62.8 110 31.8
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.2e-07 62.4 305 25.2
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.6e-07 62.0 110 30.9
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 2.0e-07 61.6 122 31.1
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 2.6e-07 61.2 102 29.4
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 3.5e-07 60.8 130 29.2
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 4.5e-07 60.5 135 26.7
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 7.7e-07 59.7 525 20.4
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 1.3e-06 58.9 110 33.6
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 2.2e-06 58.2 110 26.4
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 2.2e-06 58.2 143 30.8
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 3.8e-06 57.4 111 27.9
GSVIVG01032966001 Vitis vinifera HOM05D007742 ORTHO05D004072 3.8e-06 57.4 153 27.5
CSS0044588 Camellia sinensis var. sinensis HOM05D001357 ORTHO05D001224 8.5e-06 56.2 52 46.2


User provided reference genes

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