Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 2.2e-73 278.9 138 100.0
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 4.4e-58 228.0 146 83.6
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 7.4e-58 227.3 145 82.1
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 8.8e-51 203.8 143 74.8
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 3.5e-47 191.8 143 69.9
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 8.5e-46 187.2 143 71.3
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 5.5e-45 184.5 143 66.4
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 2.3e-43 179.1 143 68.5
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 1.2e-42 176.8 143 66.4
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 1.2e-42 176.8 143 66.4
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 2.7e-39 165.6 146 63.0
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 5.0e-38 161.4 142 62.7
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 8.5e-38 160.6 140 60.7
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 7.2e-37 157.5 141 60.3
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 1.4e-35 153.3 139 58.3
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 1.7e-33 146.4 142 56.3
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 6.3e-33 144.4 97 73.2
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 1.1e-32 143.7 127 59.8
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 1.1e-32 143.7 142 56.3
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 1.4e-32 143.3 143 55.9
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 2.4e-32 142.5 142 56.3
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 3.1e-32 142.1 139 58.3
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 5.4e-32 141.4 142 57.0
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 7.0e-32 141.0 123 56.1
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 1.6e-31 139.8 138 57.2
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 3.5e-31 138.7 142 55.6
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 4.5e-31 138.3 142 54.2
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 7.7e-31 137.5 147 54.4
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.3e-30 136.7 149 51.0
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 1.3e-30 136.7 149 51.0
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.7e-30 136.3 124 56.5
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 2.9e-30 135.6 138 54.3
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 2.9e-30 135.6 143 54.5
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 3.8e-30 135.2 140 52.9
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 3.8e-30 135.2 142 54.2
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 6.6e-30 134.4 124 56.5
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 6.6e-30 134.4 139 53.2
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 6.6e-30 134.4 141 55.3
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 8.6e-30 134.0 142 54.2
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 8.6e-30 134.0 142 54.2
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 8.6e-30 134.0 141 52.5
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 8.6e-30 134.0 138 55.1
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 1.5e-29 133.3 140 53.6
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 1.9e-29 132.9 135 57.8
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 2.5e-29 132.5 131 55.0
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 2.5e-29 132.5 131 55.0
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 2.5e-29 132.5 149 49.7
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 2.5e-29 132.5 145 51.7
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 3.3e-29 132.1 146 55.5
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 3.3e-29 132.1 145 52.4
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 3.3e-29 132.1 139 54.7
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 4.2e-29 131.7 136 50.0
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 5.5e-29 131.3 145 50.3
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 7.2e-29 131.0 148 52.0
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 7.2e-29 131.0 140 50.7
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 9.5e-29 130.6 146 52.7
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 9.5e-29 130.6 143 51.7
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 1.2e-28 130.2 143 51.0
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 1.2e-28 130.2 142 54.2
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 1.2e-28 130.2 136 52.2
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 1.2e-28 130.2 122 54.9
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 1.6e-28 129.8 90 67.8
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 1.6e-28 129.8 124 55.6
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 2.1e-28 129.4 134 52.2
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 2.8e-28 129.0 143 54.5
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 2.8e-28 129.0 126 54.8
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 3.6e-28 128.6 113 56.6
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 3.6e-28 128.6 143 54.5
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 4.7e-28 128.3 138 51.4
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 4.7e-28 128.3 152 52.0
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 6.1e-28 127.9 145 53.8
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 6.1e-28 127.9 151 47.7
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 1.0e-27 127.1 127 54.3
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 1.4e-27 126.7 143 53.1
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 1.8e-27 126.3 134 53.0
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 1.8e-27 126.3 97 61.9
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 1.8e-27 126.3 162 46.3
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 1.8e-27 126.3 141 51.8
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 1.8e-27 126.3 136 49.3
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 2.3e-27 125.9 144 52.8
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 3.0e-27 125.6 135 51.1
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 4.0e-27 125.2 142 49.3
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 5.2e-27 124.8 137 51.1
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 5.2e-27 124.8 141 48.2
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 6.8e-27 124.4 136 51.5
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 1.2e-26 123.6 139 50.4
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 4.4e-26 121.7 99 61.6
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 1.3e-25 120.2 145 51.7
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 1.7e-25 119.8 79 72.2
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 2.2e-25 119.4 78 73.1
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 2.2e-25 119.4 79 72.2
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 3.7e-25 118.6 134 48.5
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 4.9e-25 118.2 138 50.7
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 5.4e-24 114.8 142 49.3
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 7.0e-24 114.4 144 50.7
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 7.0e-24 114.4 135 51.9
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 1.2e-23 113.6 140 50.7
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 1.6e-23 113.2 110 51.8
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 2.0e-23 112.8 124 54.0
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 5.9e-23 111.3 70 70.0
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 1.0e-22 110.5 107 53.3
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 2.9e-22 109.0 95 57.9
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 6.6e-22 107.8 82 63.4
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 8.6e-22 107.5 88 63.6
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 3.3e-21 105.5 114 52.6
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 3.3e-21 105.5 92 57.6
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 4.3e-21 105.1 122 53.3
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 5.6e-21 104.8 78 62.8
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 5.6e-21 104.8 78 62.8
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 4.7e-20 101.7 77 64.9
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 6.8e-19 97.8 120 51.7
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 3.4e-18 95.5 99 48.5
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 2.4e-16 89.4 82 56.1
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 4.1e-16 88.6 122 39.3
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 4.1e-16 88.6 135 42.2
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 3.0e-14 82.4 70 58.6
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 5.0e-14 81.6 120 47.5
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 6.6e-14 81.3 74 55.4
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 6.6e-14 81.3 119 46.2
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 1.5e-13 80.1 88 42.0
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 4.3e-13 78.6 69 55.1
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 4.3e-13 78.6 120 46.7
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 1.6e-12 76.6 126 37.3
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 3.6e-12 75.5 80 45.0
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 2.2e-09 66.2 108 41.7
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 1.9e-08 63.2 108 44.4
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 3.9e-06 55.5 113 34.5
Zm00001eb390880 Zea mays HOM05D001191 ORTHO05D000979 6.6e-06 54.7 83 37.3


User provided reference genes

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