Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.1e-284 982.6 491 100.0
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.1e-284 982.6 491 100.0
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 3.6e-256 887.9 491 91.4
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 3.5e-251 871.3 492 89.6
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 2.2e-245 852.0 491 87.2
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 4.1e-236 821.2 492 84.8
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 5.1e-234 814.3 492 84.6
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 4.7e-232 807.7 492 83.7
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.4e-231 806.2 491 83.9
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 6.4e-221 770.8 491 78.8
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 6.4e-221 770.8 491 78.6
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 9.3e-220 766.9 463 83.6
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 6.0e-219 764.2 502 77.3
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 4.3e-217 758.1 492 80.5
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 2.5e-209 732.3 463 80.6
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-208 729.9 491 76.2
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 1.9e-188 662.9 491 68.8
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 3.6e-187 658.7 503 67.2
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 3.6e-187 658.7 490 67.3
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 7.9e-187 657.5 502 66.9
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 3.3e-185 652.1 489 67.9
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 2.8e-184 649.0 490 66.7
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.2e-182 643.7 491 67.4
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 2.6e-182 642.5 493 66.5
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.9e-181 639.0 491 66.8
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.6e-179 633.3 493 64.9
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 7.9e-179 630.9 492 65.2
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.0e-178 630.6 494 65.8
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.4e-178 630.2 499 65.7
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.0e-178 629.0 495 65.5
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 5.1e-178 628.2 500 64.8
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.0e-177 626.3 498 66.1
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.3e-176 623.6 493 65.7
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.3e-176 623.6 484 65.5
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.4e-175 620.2 500 64.4
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.4e-175 619.4 493 63.7
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 9.1e-175 617.5 493 63.5
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 4.5e-174 615.1 477 63.9
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 7.7e-174 614.4 478 64.9
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.9e-173 612.5 493 63.3
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 8.5e-173 610.9 493 63.1
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 9.4e-172 607.4 477 63.5
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 9.4e-172 607.4 490 62.0
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.2e-171 607.1 493 62.3
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.7e-171 605.9 494 62.6
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 5.9e-166 588.2 402 72.9
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 4.2e-164 582.0 493 60.2
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 4.2e-164 582.0 499 60.9
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 5.5e-164 581.6 497 61.4
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.2e-163 580.5 489 59.5
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.0e-162 577.4 489 58.9
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.4e-162 577.0 529 58.6
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 5.7e-161 571.6 442 64.9
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 7.5e-161 571.2 489 58.7
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 3.7e-160 568.9 489 60.5
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.8e-159 566.6 400 69.5
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.2e-158 563.9 476 60.9
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.6e-158 563.5 744 45.6
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 2.2e-157 559.7 491 57.2
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 3.8e-157 558.9 439 64.5
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 4.7e-155 552.0 462 63.0
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 6.1e-155 551.6 403 66.0
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 8.8e-154 547.7 496 55.4
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.2e-153 547.4 462 59.3
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.2e-153 547.4 463 59.6
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.5e-153 547.0 457 60.8
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.6e-153 546.2 476 60.1
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.4e-153 545.8 502 57.4
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 3.4e-153 545.8 449 63.0
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.1e-151 538.9 498 54.6
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 5.9e-150 535.0 491 55.0
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.3e-149 533.9 491 58.7
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.7e-149 533.5 562 52.3
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 4.2e-148 528.9 416 63.2
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 7.2e-148 528.1 444 58.1
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 1.2e-147 527.3 462 60.0
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.6e-147 526.9 401 64.8
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.8e-147 526.2 491 56.2
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.6e-147 525.8 428 60.3
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 5.2e-146 521.9 485 55.7
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 8.9e-146 521.2 469 58.4
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 5.7e-145 518.5 494 55.1
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 7.5e-145 518.1 493 56.2
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.3e-144 517.3 468 56.2
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.3e-144 517.3 438 58.9
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.7e-144 516.9 492 57.7
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 2.2e-144 516.5 444 57.7
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 2.2e-144 516.5 402 61.9
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 4.9e-144 515.4 485 56.5
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 6.3e-144 515.0 431 61.7
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.8e-143 513.5 399 63.7
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.4e-143 513.1 431 61.3
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 7.0e-143 511.5 400 62.8
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.2e-142 510.8 430 58.1
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.2e-142 510.8 430 58.1
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.2e-142 510.8 395 62.8
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.6e-142 510.4 502 55.8
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.6e-142 510.4 402 63.4
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.6e-142 510.4 434 61.5
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 2.0e-142 510.0 430 57.9
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.0e-142 510.0 402 61.4
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 2.7e-142 509.6 402 60.9
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 7.8e-142 508.1 503 54.7
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.9e-141 506.1 403 64.0
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 2.9e-141 506.1 490 54.5
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 6.6e-141 505.0 490 54.3
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 6.6e-141 505.0 488 54.9
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 8.6e-141 504.6 428 58.9
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 8.6e-141 504.6 437 61.1
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.5e-140 503.8 404 62.1
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.9e-140 503.4 492 54.3
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 2.5e-140 503.1 493 54.6
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 2.5e-140 503.1 493 54.6
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 2.5e-140 503.1 493 54.6
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 3.3e-140 502.7 469 54.6
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 5.6e-140 501.9 493 55.4
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 7.3e-140 501.5 499 55.3
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 7.3e-140 501.5 404 61.9
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.6e-139 500.4 506 54.3
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.0e-138 497.7 428 61.4
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-138 497.3 431 57.8
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.4e-138 497.3 452 56.0
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 2.3e-138 496.5 495 54.7
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 4.0e-138 495.7 495 54.7
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 8.9e-138 494.6 554 50.9
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.6e-137 493.0 363 66.4
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.4e-137 492.3 398 61.3
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 2.2e-136 490.0 357 65.0
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 2.2e-136 490.0 400 62.2
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.9e-136 489.6 361 66.5
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 6.4e-136 488.4 400 59.5
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 6.0e-134 481.9 466 54.5
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.0e-133 481.1 402 59.2
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.1e-132 477.6 482 55.4
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.5e-132 477.2 485 53.8
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.8e-130 470.3 372 62.6
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 8.9e-130 468.0 459 53.6
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 1.2e-129 467.6 614 45.9
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 4.3e-124 449.1 318 70.1
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 6.2e-123 445.3 311 68.2
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 9.9e-121 438.0 401 54.4
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 3.5e-118 429.5 378 59.3
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 7.3e-116 421.8 405 55.8
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.8e-115 419.9 401 51.4
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 4.9e-112 409.1 452 48.9
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 4.2e-103 379.4 378 51.9
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 5.3e-90 335.9 257 65.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 3.4e-81 306.6 280 56.4
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.2e-79 299.7 219 66.7
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 2.7e-78 297.0 248 60.1
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.9e-76 290.8 224 65.6
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.3e-75 288.1 255 57.6
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 2.1e-70 270.8 174 71.3
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 8.5e-64 248.8 311 44.4
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 8.5e-64 248.8 252 52.0
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.2e-53 213.0 412 37.9
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 3.3e-52 210.3 270 43.3
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.2e-46 191.8 416 32.9
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.7e-35 154.8 122 67.2
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 6.3e-35 152.9 157 51.6
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 1.1e-34 152.1 263 40.3
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.7e-32 144.8 198 43.9
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 9.8e-28 129.0 286 31.5
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.2e-27 127.9 103 65.0
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 9.2e-26 122.5 664 22.9
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.0e-25 121.3 101 60.4
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.6e-25 120.2 140 48.6
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 7.3e-23 112.8 117 52.1
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.4e-18 98.6 112 49.1
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 3.5e-17 94.0 237 32.5
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 8.9e-13 79.3 60 60.0
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.4e-10 72.0 47 66.0
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 1.9e-07 61.6 345 24.3
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 2.8e-06 57.8 58 51.7


User provided reference genes

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