Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1829.7 935 100.0
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1645.6 935 89.7
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 0.0e+00 1606.7 941 88.0
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1538.1 939 84.0
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 0.0e+00 1532.7 933 84.8
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1486.9 933 81.7
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 0.0e+00 1476.8 936 81.1
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 0.0e+00 1356.3 999 73.1
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 0.0e+00 1281.2 808 81.7
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1279.6 941 69.2
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1266.9 942 68.2
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1261.1 939 69.0
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1260.4 938 67.6
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1259.6 939 68.9
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1255.7 938 68.8
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1247.3 939 68.5
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1240.7 942 66.7
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1234.9 939 66.5
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1234.9 936 67.0
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1231.9 947 66.0
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1227.6 945 66.9
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1225.3 939 65.8
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1224.5 945 65.9
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1224.5 945 66.0
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1216.4 937 66.0
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1216.4 952 65.3
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1214.9 937 65.8
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1211.1 938 65.8
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1208.7 929 67.2
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1206.4 937 64.5
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1205.7 948 65.6
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 0.0e+00 1204.5 983 64.6
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1199.5 947 64.1
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1192.6 936 64.1
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 0.0e+00 1183.3 941 65.2
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1181.8 949 64.1
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1181.0 947 64.7
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1178.3 960 62.6
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 0.0e+00 1169.8 944 62.2
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 0.0e+00 1166.0 941 62.3
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 0.0e+00 1161.7 946 62.2
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 0.0e+00 1157.9 933 65.4
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 0.0e+00 1156.7 945 62.0
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 0.0e+00 1148.7 938 62.5
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1148.7 942 62.1
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1147.5 940 62.7
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1138.3 942 61.3
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1130.2 934 60.6
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 0.0e+00 1129.4 938 61.0
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1127.5 942 60.4
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 0.0e+00 1126.7 916 62.0
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 0.0e+00 1125.9 948 60.5
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1124.8 942 60.3
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 0.0e+00 1124.8 942 60.3
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 0.0e+00 1122.1 947 60.5
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 0.0e+00 1119.0 916 61.8
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 0.0e+00 1118.2 941 60.6
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1116.7 939 60.1
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 0.0e+00 1107.8 946 59.4
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 0.0e+00 1104.0 959 59.7
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 0.0e+00 1102.0 938 59.4
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 0.0e+00 1096.6 939 58.3
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1095.1 936 59.5
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 0.0e+00 1094.3 948 59.2
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 0.0e+00 1093.2 961 58.8
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1092.4 945 59.6
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 0.0e+00 1090.5 855 65.6
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 0.0e+00 1089.7 946 59.1
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 0.0e+00 1087.4 948 58.4
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 0.0e+00 1077.0 940 58.5
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 0.0e+00 1075.8 939 58.7
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 1.3e-311 1073.2 937 58.2
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 2.6e-311 1072.0 942 59.1
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 4.9e-310 1067.8 821 66.6
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 1.8e-309 1065.8 942 58.2
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 8.5e-307 1057.0 943 58.2
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 3.2e-306 1055.0 916 59.3
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 9.4e-306 1053.5 936 57.8
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.6e-297 1026.2 945 57.2
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 1.6e-292 1009.6 944 56.5
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 2.0e-292 1009.2 940 57.4
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 7.8e-292 1007.3 905 57.8
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 1.1e-290 1003.4 940 57.0
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.3e-286 989.9 761 66.0
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 9.5e-274 947.2 858 56.5
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 8.6e-267 924.1 742 65.4
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 7.6e-263 911.0 846 55.2
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 4.9e-262 908.3 944 50.5
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.4e-253 879.4 835 57.5
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 6.0e-252 874.8 684 64.2
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 4.8e-241 838.6 945 48.6
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 4.2e-229 798.9 489 82.2
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 6.3e-217 758.4 944 44.5
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 3.3e-210 736.1 661 59.0
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 6.3e-193 678.7 416 83.2
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 2.0e-191 673.7 968 40.9
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 1.0e-187 661.4 953 40.1
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 5.0e-174 615.9 466 72.3
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 3.3e-173 613.2 919 38.5
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 4.6e-143 513.1 875 36.0
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 8.7e-142 508.8 743 40.9
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.3e-134 485.0 395 62.8
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 3.6e-132 476.9 932 32.7
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.2e-129 467.6 425 59.1
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 2.2e-129 467.6 457 58.9
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 2.3e-126 457.6 893 35.1
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.5e-96 356.7 428 48.1
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 7.0e-91 339.7 267 63.7
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.2e-77 295.8 188 73.4
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 6.5e-73 280.0 463 43.8
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 4.4e-45 187.6 347 40.1
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.2e-44 185.3 353 39.4
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.0e-41 174.9 150 60.0
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.6e-40 170.6 349 36.7
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 8.6e-33 146.7 117 70.9
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 3.8e-28 131.3 135 54.8
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.9e-27 129.0 245 39.2
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 9.6e-24 116.7 136 50.0
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 1.3e-23 116.3 132 50.8
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.3e-22 110.9 73 71.2
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 9.0e-22 110.2 73 71.2
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 2.0e-21 109.0 73 69.9
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 1.3e-20 106.3 73 68.5
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 8.4e-20 103.6 118 49.2
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 3.2e-19 101.7 67 73.1
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.0e-18 97.4 136 44.9
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 9.6e-16 90.1 124 41.1
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.8e-14 85.9 61 62.3
PRCOL_00006857 Prasinoderma coloniale HOM05D004953 ORTHO05D006193 3.1e-14 85.1 540 23.0
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 2.0e-13 82.4 39 97.4
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.6e-13 82.0 61 60.7
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 4.5e-13 81.3 55 65.5
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 2.9e-12 78.6 46 76.1
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.9e-12 77.8 55 63.6
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 1.1e-11 76.6 69 53.6
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.4e-11 75.5 100 44.0
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 7.9e-10 70.5 311 24.4
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.3e-09 69.7 59 74.6
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 5.1e-09 67.8 67 50.7
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 5.6e-08 64.3 67 50.7
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.2e-07 60.8 37 75.7
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 6.2e-07 60.8 93 34.4


User provided reference genes

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