Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 2.4e-119 432.2 215 100.0
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 1.9e-113 412.5 215 94.9
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 6.3e-112 407.5 215 94.0
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 2.9e-109 398.7 217 94.0
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 2.5e-108 395.6 216 92.1
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 5.5e-108 394.4 215 90.2
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 2.1e-107 392.5 215 89.8
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 1.0e-106 390.2 215 90.2
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 2.2e-104 382.5 215 89.3
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 2.8e-104 382.1 215 88.4
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 2.8e-104 382.1 215 87.4
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 3.1e-103 378.6 215 87.0
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 6.9e-103 377.5 214 87.4
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 4.2e-100 368.2 218 84.4
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 1.2e-99 366.7 219 84.5
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 1.6e-99 366.3 220 83.2
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 2.7e-99 365.5 217 84.8
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 2.7e-99 365.5 217 84.8
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 7.9e-99 364.0 219 83.6
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 1.0e-98 363.6 219 84.9
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.4e-98 363.2 219 83.6
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 8.8e-98 360.5 221 83.7
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 1.1e-97 360.1 220 83.2
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.1e-97 360.1 219 83.6
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 1.5e-97 359.8 219 83.1
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.5e-97 359.8 219 83.1
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 2.0e-97 359.4 217 83.9
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 2.0e-97 359.4 219 83.1
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 2.5e-97 359.0 219 83.1
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.5e-97 359.0 219 83.1
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 9.7e-97 357.1 219 82.6
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 9.7e-97 357.1 219 82.6
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 1.3e-96 356.7 219 83.1
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 1.3e-96 356.7 219 84.0
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.3e-96 356.7 219 82.6
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 1.3e-96 356.7 218 82.1
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.7e-96 356.3 219 82.6
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 2.2e-96 355.9 218 81.2
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 2.2e-96 355.9 218 82.1
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 2.2e-96 355.9 218 82.1
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 6.3e-96 354.4 219 79.9
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 6.3e-96 354.4 216 82.4
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 6.3e-96 354.4 219 81.3
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 1.1e-95 353.6 221 79.2
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.4e-95 353.2 216 81.9
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.4e-95 353.2 221 79.2
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 1.8e-95 352.8 218 81.7
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.8e-95 352.8 220 79.5
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 3.1e-95 352.1 217 81.6
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 3.1e-95 352.1 217 81.1
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 4.1e-95 351.7 219 80.4
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 4.1e-95 351.7 219 80.4
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 4.1e-95 351.7 219 80.4
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 6.9e-95 350.9 217 81.6
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 6.9e-95 350.9 217 81.6
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 9.1e-95 350.5 230 78.3
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 1.2e-94 350.1 217 80.2
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 1.2e-94 350.1 217 80.2
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.2e-94 350.1 219 80.4
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 1.2e-94 350.1 217 80.6
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 1.2e-94 350.1 219 79.9
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.5e-94 349.7 218 80.7
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.5e-94 349.7 219 80.4
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 1.5e-94 349.7 217 81.1
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 2.0e-94 349.4 219 79.9
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 2.0e-94 349.4 219 79.9
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 2.0e-94 349.4 218 80.3
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 2.6e-94 349.0 217 80.2
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 2.6e-94 349.0 217 80.6
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 3.4e-94 348.6 219 80.8
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 3.4e-94 348.6 217 79.7
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 3.4e-94 348.6 220 81.8
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 3.4e-94 348.6 220 81.8
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 3.4e-94 348.6 219 80.8
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 3.4e-94 348.6 218 81.2
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 4.5e-94 348.2 217 79.3
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 5.9e-94 347.8 217 81.6
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 5.9e-94 347.8 219 79.5
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 7.7e-94 347.4 218 79.8
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 7.7e-94 347.4 219 79.5
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 1.3e-93 346.7 219 79.5
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.3e-93 346.7 219 79.5
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 1.7e-93 346.3 217 80.2
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 2.2e-93 345.9 219 82.2
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 2.2e-93 345.9 219 80.4
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 2.2e-93 345.9 218 80.3
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 2.9e-93 345.5 217 81.1
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 3.8e-93 345.1 218 78.9
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 3.8e-93 345.1 216 80.6
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 3.8e-93 345.1 218 79.8
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 3.8e-93 345.1 223 79.4
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 5.0e-93 344.7 219 79.0
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 1.1e-92 343.6 217 79.7
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.1e-92 343.6 219 79.5
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.9e-92 342.8 219 80.8
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 3.2e-92 342.0 215 80.9
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 3.2e-92 342.0 215 78.1
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 3.2e-92 342.0 216 81.0
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 4.2e-92 341.7 215 80.5
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.2e-91 340.1 217 79.7
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 1.2e-91 340.1 213 78.9
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.6e-91 339.7 216 79.6
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 2.1e-91 339.3 215 79.5
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.7e-91 339.0 216 80.6
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.7e-91 339.0 216 80.6
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 3.6e-91 338.6 219 77.2
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 3.6e-91 338.6 217 78.3
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 1.4e-90 336.7 222 78.4
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 2.3e-90 335.9 215 79.1
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 3.9e-90 335.1 217 78.3
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 6.7e-90 334.3 216 81.0
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.1e-89 333.6 217 78.8
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 1.5e-89 333.2 218 78.4
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 2.0e-89 332.8 220 75.9
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.6e-89 332.4 217 76.0
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 4.4e-89 331.6 218 76.1
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 7.4e-89 330.9 214 78.0
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 1.3e-88 330.1 220 75.9
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 2.8e-88 328.9 215 77.2
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 4.2e-84 315.1 213 76.1
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 3.3e-81 305.4 219 70.3
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 1.3e-80 303.5 214 72.9
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 2.8e-80 302.4 173 83.2
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 4.1e-79 298.5 165 86.1
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 2.7e-75 285.8 163 84.0
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.4e-74 283.5 190 74.7
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 5.2e-74 281.6 165 83.0
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 6.3e-72 274.6 173 74.6
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 5.4e-71 271.6 169 77.5
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 7.7e-70 267.7 172 73.8
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 7.7e-70 267.7 174 75.3
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.5e-68 262.7 188 69.7
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 5.0e-61 238.4 218 61.9
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.8e-58 229.9 220 58.2
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 8.9e-58 227.6 170 66.5
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 3.2e-47 192.6 190 53.7
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 3.9e-45 185.7 174 55.7
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 4.7e-43 178.7 127 70.1
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 4.7e-43 178.7 146 59.6
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 6.2e-43 178.3 131 71.8
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 7.1e-39 164.9 98 82.7
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 1.7e-29 133.7 107 68.2
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.4e-15 86.7 58 72.4
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 2.4e-15 86.7 58 72.4
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 3.2e-07 59.7 54 55.6


User provided reference genes

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