Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07673_v3 Cicer arietinum L. HOM05D010147 ORTHO05D006739 3.4e-212 741.5 399 100.0
Ca_07681_v3 Cicer arietinum L. HOM05D010147 ORTHO05D006739 5.4e-125 451.8 384 60.9
Ca_07683_v3 Cicer arietinum L. HOM05D010147 ORTHO05D006739 2.5e-98 363.2 333 59.2
Ca_07680_v3 Cicer arietinum L. HOM05D010147 ORTHO05D006739 3.5e-92 342.8 404 47.8
Ca_07674_v3 Cicer arietinum L. HOM05D010147 ORTHO05D006739 6.6e-83 312.0 407 45.7
Ca_07672_v3 Cicer arietinum L. HOM05D010147 ORTHO05D006739 3.6e-81 306.2 405 44.4
Medtr1g069525 Medicago truncatula HOM05D010147 ORTHO05D006739 2.7e-68 263.5 407 40.0
TPR.G21321 Trifolium pratense HOM05D010147 ORTHO05D006739 6.7e-67 258.8 422 38.6
Medtr7g069800 Medicago truncatula HOM05D010147 ORTHO05D006739 1.8e-64 250.8 415 41.0
Medtr7g069870 Medicago truncatula HOM05D010147 ORTHO05D006739 5.3e-64 249.2 410 39.5
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 5.3e-64 249.2 429 37.1
TPR.G6682 Trifolium pratense HOM05D010147 ORTHO05D006739 4.5e-63 246.1 431 38.3
Medtr7g069820 Medicago truncatula HOM05D010147 ORTHO05D006739 5.8e-63 245.7 412 40.0
Medtr1g069530 Medicago truncatula HOM05D010147 ORTHO05D006739 7.6e-63 245.4 410 38.5
Medtr7g069850 Medicago truncatula HOM05D010147 ORTHO05D006739 5.5e-61 239.2 393 40.2
TPR.G38170 Trifolium pratense HOM05D010147 ORTHO05D006739 1.2e-60 238.0 422 36.5
Medtr7g069840 Medicago truncatula HOM05D010147 ORTHO05D006739 1.2e-52 211.5 363 39.1
Lj1g0005351 Lotus japonicus HOM05D010147 ORTHO05D006739 7.9e-52 208.8 343 39.1
Medtr1g025800 Medicago truncatula HOM05D010147 ORTHO05D006739 4.5e-47 193.0 345 39.4
Lalb_Chr19g0124301 Lupinus albus HOM05D010147 ORTHO05D006739 1.6e-31 141.4 422 28.7
FvH4_6g37552 Fragaria vesca HOM05D006368 ORTHO05D006739 2.7e-20 104.0 325 26.5
Medtr7g100490 Medicago truncatula HOM05D010147 ORTHO05D006739 6.1e-20 102.8 108 50.0
TPR.G6699 Trifolium pratense HOM05D010147 ORTHO05D006739 3.0e-19 100.5 156 39.7
RcHm_v2.0_Chr4g0430971 Rosa chinensis HOM05D006368 ORTHO05D006739 7.5e-18 95.9 456 25.0
TAR628G1200 Trochodendron aralioides HOM05D000151 ORTHO05D000074 9.8e-18 95.5 420 24.3
FvH4_6g37591 Fragaria vesca HOM05D006368 ORTHO05D006739 1.7e-17 94.7 333 25.2
RcHm_v2.0_Chr5g0067081 Rosa chinensis HOM05D006368 ORTHO05D006739 3.7e-17 93.6 454 24.0
FAN16G0274 Fragaria x ananassa HOM05D006368 ORTHO05D006739 8.3e-17 92.4 315 28.6
MD03G1085600 Malus domestica HOM05D006368 ORTHO05D006739 2.4e-16 90.9 382 25.4
TPR.G25164 Trifolium pratense HOM05D010147 ORTHO05D006739 5.4e-16 89.7 431 23.7
FAN14G0979 Fragaria x ananassa HOM05D006368 ORTHO05D006739 7.7e-15 85.9 266 27.1
FAN09G4055 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.7e-14 84.7 350 26.9
Prupe.3G239100 Prunus persica HOM05D006368 ORTHO05D006739 1.7e-14 84.7 380 25.0
TAR626G0819 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.2e-14 84.3 238 27.3
FAN05G3822 Fragaria x ananassa HOM05D006368 ORTHO05D006739 6.5e-14 82.8 353 26.6
QL02p013380 Quercus lobata HOM05D000151 ORTHO05D000074 8.5e-14 82.4 426 25.1
FAN02G0212 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.5e-13 80.9 381 25.7
FvH4_3g37301 Fragaria vesca HOM05D006368 ORTHO05D006739 5.5e-13 79.7 242 26.9
FAN14G2460 Fragaria x ananassa HOM05D006368 ORTHO05D006739 5.5e-13 79.7 375 27.7
FvH4_4g05011 Fragaria vesca HOM05D000151 ORTHO05D000074 9.5e-13 79.0 192 27.6
FAN12G2895 Fragaria x ananassa HOM05D006368 ORTHO05D006739 9.5e-13 79.0 465 23.4
TAR525G0003 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.2e-12 78.6 176 29.5
TAR626G0415 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.2e-12 78.6 176 29.5
TAR636G1766 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.6e-12 78.2 338 24.3
CANSAT25G2327 Cannabis sativa HOM05D000151 ORTHO05D000074 3.6e-12 77.0 421 23.3
TAR636G3441 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.0e-11 75.5 332 24.4
RcHm_v2.0_Chr2g0153831 Rosa chinensis HOM05D006368 ORTHO05D006739 1.4e-11 75.1 402 21.6
TAR636G0219 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.0e-11 73.6 183 29.5
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.0e-11 73.6 183 29.5
FvH4_4g01970 Fragaria vesca HOM05D007346 ORTHO05D009044 5.2e-11 73.2 277 24.5
FvH4_6g49640 Fragaria vesca HOM05D006368 ORTHO05D006739 6.8e-11 72.8 376 26.9
TWI56G0068 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.5e-10 71.6 341 22.3
FAN08G0813 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.0e-10 71.2 329 26.4
RcHm_v2.0_Chr2g0166171 Rosa chinensis HOM05D006368 ORTHO05D006739 2.0e-10 71.2 338 24.6
FAN14G0584 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.6e-10 70.9 368 23.9
FAN14G2798 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.6e-10 70.9 368 23.9
CiPaw.08G069900 Carya illinoinensis HOM05D000151 ORTHO05D000074 4.4e-10 70.1 354 25.4
FAN09G0606 Fragaria x ananassa HOM05D006368 ORTHO05D006739 4.4e-10 70.1 192 29.2
Actinidia15471 Actinidia chinensis HOM05D000151 ORTHO05D000074 5.7e-10 69.7 419 22.0
Lalb_Chr19g0133241 Lupinus albus HOM05D006368 ORTHO05D006739 5.7e-10 69.7 359 26.7
Manes.07G051600 Manihot esculenta HOM05D000151 ORTHO05D000074 5.7e-10 69.7 416 21.2
CSS0022996 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 7.5e-10 69.3 413 22.3
FAN12G0105 Fragaria x ananassa HOM05D007346 ORTHO05D009044 7.5e-10 69.3 277 24.2
FAN18G3544 Fragaria x ananassa HOM05D006368 ORTHO05D006739 9.8e-10 68.9 329 26.1
Dinv39566 Davidia involucrata HOM05D000151 ORTHO05D000074 1.3e-09 68.6 350 23.1
FvH4_4g02080 Fragaria vesca HOM05D007346 ORTHO05D009044 1.3e-09 68.6 228 25.9
FvH4_6g22332 Fragaria vesca HOM05D010931 ORTHO05D016562 1.7e-09 68.2 157 29.3
TWI12G0155 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.7e-09 68.2 242 24.8
FvH4_4g23711 Fragaria vesca HOM05D006368 ORTHO05D006739 2.2e-09 67.8 468 23.1
FvH4_6g47140 Fragaria vesca HOM05D006368 ORTHO05D006739 2.2e-09 67.8 254 25.6
FAN14G1492 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.2e-09 67.8 343 25.1
RcHm_v2.0_Chr2g0166201 Rosa chinensis HOM05D006368 ORTHO05D006739 2.2e-09 67.8 375 25.3
FvH4_6g22212 Fragaria vesca HOM05D010931 ORTHO05D016562 2.8e-09 67.4 139 32.4
FvH4_6g47190 Fragaria vesca HOM05D006368 ORTHO05D006739 2.8e-09 67.4 337 25.5
FAN13G2475 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.8e-09 67.4 329 25.8
FAN14G5568 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.8e-09 67.4 376 24.5
Aqoxy5G02614 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 3.7e-09 67.0 265 26.4
MD09G1050100 Malus domestica HOM05D006368 ORTHO05D006739 3.7e-09 67.0 335 26.3
TWI56G0047 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 3.7e-09 67.0 247 24.3
FvH4_6g47130 Fragaria vesca HOM05D006368 ORTHO05D006739 4.9e-09 66.6 343 25.1
FvH4_6g49281 Fragaria vesca HOM05D006368 ORTHO05D006739 4.9e-09 66.6 336 26.2
FAN14G0813 Fragaria x ananassa HOM05D006368 ORTHO05D006739 4.9e-09 66.6 336 26.2
FvH4_4g02090 Fragaria vesca HOM05D007346 ORTHO05D009044 6.3e-09 66.2 222 24.8
FAN05G3646 Fragaria x ananassa HOM05D006368 ORTHO05D006739 8.3e-09 65.9 275 25.8
Lsat_1_v5_gn_2_5520 Lactuca sativa HOM05D000151 ORTHO05D000074 8.3e-09 65.9 422 21.8
Psat0s7650g0040 Pisum sativum HOM05D000151 ORTHO05D000074 8.3e-09 65.9 394 23.6
Aqoxy2G03785 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.1e-08 65.5 246 27.2
FvH4_5g02330 Fragaria vesca HOM05D006368 ORTHO05D006739 1.1e-08 65.5 209 29.2
MBI18_g45941_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.1e-08 65.5 226 25.7
Aqoxy7G00582 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.4e-08 65.1 193 30.1
Medtr3g114970 Medicago truncatula HOM05D000151 ORTHO05D000074 1.4e-08 65.1 152 31.6
PGSC0003DMG400001765 Solanum tuberosum HOM05D000151 ORTHO05D000074 1.4e-08 65.1 400 21.8
MSTRG.1137 Avicennia marina HOM05D000151 ORTHO05D000074 1.8e-08 64.7 413 21.3
FvH4_6g49120 Fragaria vesca HOM05D006368 ORTHO05D006739 1.8e-08 64.7 341 22.3
Prupe.1G358000 Prunus persica HOM05D000151 ORTHO05D000074 1.8e-08 64.7 341 24.6
FvH4_7g28820 Fragaria vesca HOM05D000151 ORTHO05D000074 2.4e-08 64.3 337 24.0
FAN02G0769 Fragaria x ananassa HOM05D006368 ORTHO05D006739 2.4e-08 64.3 376 24.2
MBI17_g17509_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 2.4e-08 64.3 186 26.3
Ciclev10001350m.g Citrus clementina HOM05D000151 ORTHO05D000074 4.1e-08 63.5 438 22.1
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.1e-08 63.5 141 30.5
MD08G1006100 Malus domestica HOM05D000151 ORTHO05D000074 4.1e-08 63.5 344 23.0
TPR.G38190 Trifolium pratense HOM05D000151 ORTHO05D000074 4.1e-08 63.5 226 26.1
Dinv43794 Davidia involucrata HOM05D000151 ORTHO05D000074 5.4e-08 63.2 419 22.0
FAN03G0418 Fragaria x ananassa HOM05D000151 ORTHO05D000074 5.4e-08 63.2 341 23.5
FAN05G1932 Fragaria x ananassa HOM05D006368 ORTHO05D006739 7.0e-08 62.8 345 24.6
FAN04G2785 Fragaria x ananassa HOM05D006368 ORTHO05D006739 9.2e-08 62.4 136 32.4
FAN05G0916 Fragaria x ananassa HOM05D006368 ORTHO05D006739 9.2e-08 62.4 129 29.5
CARHR036030 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.2e-07 62.0 203 27.6
FAN03G1676 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.2e-07 62.0 336 23.5
FAN10G0746 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.2e-07 62.0 142 31.7
FAN14G3911 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.2e-07 62.0 142 31.7
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.6e-07 61.6 138 31.2
FAN09G3687 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.6e-07 61.6 334 25.4
Nitab4.5_0003280g0060 Nicotiana tabacum HOM05D000151 ORTHO05D000074 1.6e-07 61.6 127 32.3
QL04p019119 Quercus lobata HOM05D000151 ORTHO05D000074 1.6e-07 61.6 366 22.1
RcHm_v2.0_Chr7g0197821 Rosa chinensis HOM05D006368 ORTHO05D006739 1.6e-07 61.6 309 25.2
Dinv43798 Davidia involucrata HOM05D000713 ORTHO05D000547 2.0e-07 61.2 339 21.8
FAN12G2737 Fragaria x ananassa HOM05D007346 ORTHO05D009044 2.0e-07 61.2 224 24.6
Dinv28402 Davidia involucrata HOM05D000151 ORTHO05D000074 2.7e-07 60.8 326 23.3
FAN02G2985 Fragaria x ananassa HOM05D002060 ORTHO05D002098 2.7e-07 60.8 346 24.3
MBI12_g28746_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 2.7e-07 60.8 142 29.6
Duzib132G1061 Durio zibethinus HOM05D007346 ORTHO05D009044 3.5e-07 60.5 218 25.7
FvH4_2g26661 Fragaria vesca HOM05D012067 ORTHO05D000440 3.5e-07 60.5 135 29.6
FAN02G1443 Fragaria x ananassa HOM05D006368 ORTHO05D006739 3.5e-07 60.5 174 28.2
MBI18_g40419_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 3.5e-07 60.5 196 23.5
HanXRQChr14g0428481 Helianthus annuus HOM05D000151 ORTHO05D000074 5.9e-07 59.7 405 23.0
Lj2g0009806 Lotus japonicus HOM05D006368 ORTHO05D006739 5.9e-07 59.7 417 21.3
Psat0s2742g0120 Pisum sativum HOM05D000151 ORTHO05D000074 5.9e-07 59.7 320 23.8
Prupe.1G004300 Prunus persica HOM05D006368 ORTHO05D006739 7.7e-07 59.3 133 29.3
Duzib150G0299 Durio zibethinus HOM05D000151 ORTHO05D000074 1.0e-06 58.9 243 24.7
FAN17G1775 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.0e-06 58.9 129 28.7
Duzib150G1664 Durio zibethinus HOM05D000151 ORTHO05D000074 1.3e-06 58.5 243 24.7
FAN24G2342 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.3e-06 58.5 400 23.5
Sp3g32580 Schrenkiella parvula HOM05D001286 ORTHO05D000440 1.3e-06 58.5 185 25.4
Aqoxy7G01873 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.7e-06 58.2 237 24.5
FvH4_2g28870 Fragaria vesca HOM05D006368 ORTHO05D006739 2.3e-06 57.8 280 25.4
FvH4_6g49280 Fragaria vesca HOM05D006368 ORTHO05D006739 2.3e-06 57.8 294 23.5
MBI19_g33448_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 2.3e-06 57.8 145 30.3
RcHm_v2.0_Chr6g0247891 Rosa chinensis HOM05D007346 ORTHO05D009044 2.3e-06 57.8 230 26.5
Peaxi162Scf00074g00631 Petunia axillaris HOM05D000151 ORTHO05D000074 2.9e-06 57.4 188 27.7
Prupe.8G152400 Prunus persica HOM05D007346 ORTHO05D009044 2.9e-06 57.4 208 26.9
Aqoxy7G00556 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 3.8e-06 57.0 399 22.6
MBI11_g05443_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 3.8e-06 57.0 129 31.0
Aqoxy7G02804 Aquilegia oxysepala HOM05D008995 ORTHO05D000074 5.0e-06 56.6 318 22.6
Ciclev10006735m.g Citrus clementina HOM05D000151 ORTHO05D000074 5.0e-06 56.6 371 22.9
Os06g0707300 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 5.0e-06 56.6 144 28.5
Carub.0007s1915 Capsella rubella HOM05D001487 ORTHO05D001365 6.6e-06 56.2 254 24.0
FvH4_4g01590 Fragaria vesca HOM05D007346 ORTHO05D009044 6.6e-06 56.2 224 24.1
FvH4_7g28790 Fragaria vesca HOM05D000151 ORTHO05D000074 6.6e-06 56.2 175 29.1
Os06g0148600 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D000074 6.6e-06 56.2 171 30.4
CARHR166590 Cardamine hirsuta HOM05D001286 ORTHO05D000440 8.6e-06 55.8 196 25.0
Prupe.3G291200 Prunus persica HOM05D006368 ORTHO05D006739 8.6e-06 55.8 374 24.1


User provided reference genes

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