Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07229_v3 Cicer arietinum L. HOM05D001813 ORTHO05D018408 1.3e-57 226.1 108 100.0
Ca_18000_v3 Cicer arietinum L. HOM05D001813 ORTHO05D004073 9.0e-51 203.4 104 92.3
Glyma.05G151100 Glycine max HOM05D001813 ORTHO05D004073 7.6e-50 200.3 104 90.4
Ca_26141_v3 Cicer arietinum L. HOM05D001813 ORTHO05D003830 1.3e-49 199.5 105 91.4
Glyma.08G107800 Glycine max HOM05D001813 ORTHO05D004073 1.7e-49 199.1 104 89.4
Lj4g0024431 Lotus japonicus HOM05D001813 ORTHO05D004073 2.1e-47 192.2 104 85.6
TPR.G11916 Trifolium pratense HOM05D001813 ORTHO05D004073 3.5e-47 191.4 104 83.7
Phvul.011G012000 Phaseolus vulgaris HOM05D001813 ORTHO05D004073 4.6e-47 191.0 104 84.6
VMungo0251G1069 Vigna mungo HOM05D001813 ORTHO05D004073 6.0e-47 190.7 104 84.6
Psat7g075960 Pisum sativum HOM05D001813 ORTHO05D004073 1.3e-46 189.5 104 86.5
Medtr8g083210 Medicago truncatula HOM05D001813 ORTHO05D004073 1.8e-46 189.1 104 83.7
Lalb_Chr12g0205681 Lupinus albus HOM05D001813 ORTHO05D004073 5.1e-46 187.6 104 82.7
Lalb_Chr13g0294741 Lupinus albus HOM05D001813 ORTHO05D004073 1.9e-45 185.7 104 81.7
Haze_13957 Corylus avellana HOM05D001813 ORTHO05D004073 4.3e-45 184.5 104 79.8
Cfa008078 Carpinus fangiana HOM05D001813 ORTHO05D004073 9.6e-45 183.3 104 78.8
arahy.Tifrunner.gnm1.ann1.45GZWB Arachis hypogaea HOM05D001813 ORTHO05D004073 3.7e-44 181.4 104 79.8
arahy.Tifrunner.gnm1.ann1.IH7417 Arachis hypogaea HOM05D001813 ORTHO05D004073 3.7e-44 181.4 104 79.8
QL09p001828 Quercus lobata HOM05D001813 ORTHO05D004073 3.7e-44 181.4 104 78.8
QL11p001782 Quercus lobata HOM05D001813 ORTHO05D004073 3.7e-44 181.4 104 78.8
Actinidia17319 Actinidia chinensis HOM05D001813 ORTHO05D004073 4.8e-44 181.0 104 77.9
MD05G1003800 Malus domestica HOM05D001813 ORTHO05D004073 8.2e-44 180.3 104 76.9
Dinv22110 Davidia involucrata HOM05D001813 ORTHO05D004073 1.1e-43 179.9 104 76.0
Prupe.5G007500 Prunus persica HOM05D001813 ORTHO05D004073 1.1e-43 179.9 104 77.9
FAN20G2120 Fragaria x ananassa HOM05D001813 ORTHO05D004073 1.8e-43 179.1 104 76.0
FAN27G3012 Fragaria x ananassa HOM05D001813 ORTHO05D004073 1.8e-43 179.1 104 76.0
Dinv07668 Davidia involucrata HOM05D001813 ORTHO05D004073 6.9e-43 177.2 104 75.0
Eucgr.F02952 Eucalyptus grandis HOM05D001813 ORTHO05D004073 6.9e-43 177.2 104 76.0
RcHm_v2.0_Chr6g0251231 Rosa chinensis HOM05D001813 ORTHO05D004073 6.9e-43 177.2 104 76.0
FvH4_2g00800 Fragaria vesca HOM05D001813 ORTHO05D004073 9.0e-43 176.8 104 75.0
FAN24G2627 Fragaria x ananassa HOM05D001813 ORTHO05D004073 9.0e-43 176.8 104 75.0
COL.COLO4_05233 Corchorus olitorius HOM05D001813 ORTHO05D004073 1.2e-42 176.4 104 76.0
MD10G1004700 Malus domestica HOM05D001813 ORTHO05D004073 1.2e-42 176.4 104 75.0
Nn8g39938 Nelumbo nucifera HOM05D001813 ORTHO05D004073 1.5e-42 176.0 104 72.1
Prupe.8G007000 Prunus persica HOM05D001813 ORTHO05D004073 1.5e-42 176.0 104 76.0
Gohir.D08G250500 Gossypium hirsutum HOM05D001813 ORTHO05D004073 2.6e-42 175.3 104 74.0
Sc19g0000480 Simmondsia chinensis HOM05D001813 ORTHO05D004073 2.6e-42 175.3 104 75.0
CiPaw.03G014400 Carya illinoinensis HOM05D001813 ORTHO05D004073 3.4e-42 174.9 104 75.0
Duzib177G0714 Durio zibethinus HOM05D001813 ORTHO05D004073 3.4e-42 174.9 104 75.0
Thhalv10024340m.g Eutrema salsugineum HOM05D001813 ORTHO05D004073 3.4e-42 174.9 104 76.0
Manes.18G116401 Manihot esculenta HOM05D001813 ORTHO05D004073 3.4e-42 174.9 104 76.9
CARHR226530 Cardamine hirsuta HOM05D001813 ORTHO05D004073 4.5e-42 174.5 104 76.0
Medtr3g084500 Medicago truncatula HOM05D001813 ORTHO05D004073 4.5e-42 174.5 104 76.0
TWI12G0391 Tripterygium wilfordii HOM05D001813 ORTHO05D004073 4.5e-42 174.5 104 75.0
CSS0044883 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D004073 5.8e-42 174.1 104 74.0
Gohir.A08G230100 Gossypium hirsutum HOM05D001813 ORTHO05D004073 5.8e-42 174.1 104 74.0
Gorai.004G267200 Gossypium raimondii HOM05D001813 ORTHO05D004073 5.8e-42 174.1 104 74.0
Psat5g099120 Pisum sativum HOM05D001813 ORTHO05D004073 5.8e-42 174.1 104 75.0
Thecc.08G178600 Theobroma cacao HOM05D001813 ORTHO05D004073 5.8e-42 174.1 104 76.9
Lj8A621G19 Lonicera japonica HOM05D001813 ORTHO05D004073 7.6e-42 173.7 104 74.0
TWI75G0485 Tripterygium wilfordii HOM05D001813 ORTHO05D004073 7.6e-42 173.7 104 72.1
Manes.12G153700 Manihot esculenta HOM05D001813 ORTHO05D004073 1.0e-41 173.3 104 74.0
Potri.013G099500 Populus trichocarpa HOM05D001813 ORTHO05D004073 1.0e-41 173.3 104 74.0
GSVIVG01036290001 Vitis vinifera HOM05D001813 ORTHO05D004073 1.0e-41 173.3 104 74.0
EL10Ac3g05151 Beta vulgaris HOM05D001813 ORTHO05D004073 1.3e-41 172.9 104 73.1
CANSAT25G1500 Cannabis sativa HOM05D001813 ORTHO05D004073 1.3e-41 172.9 104 73.1
Cpa.g.sc21.85 Carica papaya HOM05D001813 ORTHO05D004073 1.3e-41 172.9 104 76.0
TAR376G0331 Trochodendron aralioides HOM05D001813 ORTHO05D004073 1.3e-41 172.9 104 75.0
AL7G34320 Arabidopsis lyrata HOM05D001813 ORTHO05D004073 1.7e-41 172.6 104 74.0
AT4G19710 Arabidopsis thaliana HOM05D001813 ORTHO05D004073 1.7e-41 172.6 104 75.0
CiPaw.04G009200 Carya illinoinensis HOM05D001813 ORTHO05D004073 2.2e-41 172.2 104 74.0
Manes.02G201600 Manihot esculenta HOM05D001813 ORTHO05D004073 2.2e-41 172.2 104 73.1
Hma1.2p1_0417F.1_g148930 Hydrangea macrophylla HOM05D001813 ORTHO05D004073 2.9e-41 171.8 104 70.2
Sabra13G0085300 Salix brachista HOM05D001813 ORTHO05D004073 2.9e-41 171.8 104 74.0
Sp7g18310 Schrenkiella parvula HOM05D001813 ORTHO05D004073 2.9e-41 171.8 104 74.0
TPR.G30756 Trifolium pratense HOM05D001813 ORTHO05D004073 2.9e-41 171.8 104 75.0
THA.LOC104812911 Tarenaya hassleriana HOM05D001813 ORTHO05D004073 3.8e-41 171.4 104 74.0
THA.LOC104813352 Tarenaya hassleriana HOM05D001813 ORTHO05D004073 3.8e-41 171.4 104 74.0
PGSC0003DMG400033126 Solanum tuberosum HOM05D001813 ORTHO05D004073 4.9e-41 171.0 104 74.0
Aqoxy3G00793 Aquilegia oxysepala HOM05D001813 ORTHO05D004073 6.5e-41 170.6 104 70.2
Nn2g12417 Nelumbo nucifera HOM05D001813 ORTHO05D004073 6.5e-41 170.6 104 73.1
Nitab4.5_0003723g0020 Nicotiana tabacum HOM05D001813 ORTHO05D004073 6.5e-41 170.6 104 75.0
Carub.0007s2144 Capsella rubella HOM05D001813 ORTHO05D004073 8.4e-41 170.2 104 74.0
PGR042G3523 Punica granatum HOM05D001813 ORTHO05D004073 8.4e-41 170.2 104 73.1
Sabra19G0083600 Salix brachista HOM05D001813 ORTHO05D004073 1.9e-40 169.1 104 73.1
Sopen06g023030 Solanum pennellii HOM05D001813 ORTHO05D004073 1.9e-40 169.1 104 73.1
SGA_v2.0_scaffold24G10648 Striga asiatica HOM05D001813 ORTHO05D004073 1.9e-40 169.1 104 71.2
MBI01_g01228_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D004073 2.5e-40 168.7 104 72.1
Nitab4.5_0000213g0120 Nicotiana tabacum HOM05D001813 ORTHO05D004073 2.5e-40 168.7 104 73.1
Potri.019G071700 Populus trichocarpa HOM05D001813 ORTHO05D004073 2.5e-40 168.7 104 72.1
AUR62005967 Chenopodium quinoa HOM05D001813 ORTHO05D004073 3.2e-40 168.3 104 72.1
ClCG08G001130 Citrullus lanatus HOM05D001813 ORTHO05D004073 3.2e-40 168.3 104 71.2
Cc10_g08630 Coffea canephora HOM05D001813 ORTHO05D004073 3.2e-40 168.3 104 73.1
vmacro06015 Vaccinium macrocarpon HOM05D001813 ORTHO05D004073 3.2e-40 168.3 104 73.1
Atru.chr13.2521 Acer truncatum HOM05D001813 ORTHO05D004073 4.2e-40 167.9 103 74.8
Atru.chr13.2615 Acer truncatum HOM05D001813 ORTHO05D004073 4.2e-40 167.9 103 74.8
BcaNung01751 Brassica carinata HOM05D001813 ORTHO05D004073 4.2e-40 167.9 104 73.1
AUR62028102 Chenopodium quinoa HOM05D001813 ORTHO05D004073 5.5e-40 167.5 104 72.1
Ciclev10018756m.g Citrus clementina HOM05D001813 ORTHO05D004073 5.5e-40 167.5 104 72.1
MELO3C022170.2 Cucumis melo HOM05D001813 ORTHO05D004073 5.5e-40 167.5 104 70.2
vmacro13124 Vaccinium macrocarpon HOM05D001813 ORTHO05D004073 5.5e-40 167.5 104 72.1
Aa31LG6G2270 Aethionema arabicum HOM05D001813 ORTHO05D004073 7.1e-40 167.2 104 73.1
CAN.G14.55 Capsicum annuum HOM05D001813 ORTHO05D004073 7.1e-40 167.2 104 74.0
MBI04_g20663_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D004073 7.1e-40 167.2 104 69.2
Sed0001278 Sechium edule HOM05D001813 ORTHO05D004073 9.3e-40 166.8 104 71.2
SEGI_36113 Sequoiadendron giganteum HOM05D001813 ORTHO05D004073 9.3e-40 166.8 104 70.2
Solyc06g064550.3 Solanum lycopersicum HOM05D001813 ORTHO05D004073 9.3e-40 166.8 104 72.1
ATR0665G656 Amborella trichopoda HOM05D001813 ORTHO05D004073 1.2e-39 166.4 104 72.1
C01p13830 Brassica napus HOM05D001813 ORTHO05D004073 1.2e-39 166.4 104 73.1
PSO017G5299 Papaver somniferum HOM05D001813 ORTHO05D004073 1.2e-39 166.4 104 72.1
Sed0008498 Sechium edule HOM05D001813 ORTHO05D004073 1.2e-39 166.4 104 72.1
Aqoxy5G00835 Aquilegia oxysepala HOM05D001813 ORTHO05D004073 1.6e-39 166.0 104 70.2
CSS0039369 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D004073 1.6e-39 166.0 104 70.2
Peaxi162Scf00078g00736 Petunia axillaris HOM05D001813 ORTHO05D004073 1.6e-39 166.0 104 70.2
Aa31LG6G2290 Aethionema arabicum HOM05D001813 ORTHO05D004073 2.1e-39 165.6 105 71.4
PSO170G5669 Papaver somniferum HOM05D001813 ORTHO05D004073 2.1e-39 165.6 104 72.1
Migut.C01380 Erythranthe guttata HOM05D001813 ORTHO05D004073 2.7e-39 165.2 104 68.3
Oeu020543.1 Olea europaea HOM05D001813 ORTHO05D004073 2.7e-39 165.2 103 69.9
Phvul.001G265600 Phaseolus vulgaris HOM05D001813 ORTHO05D004073 2.7e-39 165.2 105 74.3
BcaC09g51372 Brassica carinata HOM05D001813 ORTHO05D004073 3.5e-39 164.9 104 72.1
A01p11690 Brassica napus HOM05D001813 ORTHO05D004073 3.5e-39 164.9 104 72.1
BolC1t01351H Brassica oleracea HOM05D001813 ORTHO05D004073 3.5e-39 164.9 104 72.1
BraA01t01111Z Brassica rapa HOM05D001813 ORTHO05D004073 3.5e-39 164.9 104 72.1
Peaxi162Scf00818g00531 Petunia axillaris HOM05D001813 ORTHO05D004073 3.5e-39 164.9 104 71.2
CDE02G3059 Ceratophyllum demersum HOM05D001813 ORTHO05D004073 4.6e-39 164.5 103 68.9
HanXRQChr09g0269231 Helianthus annuus HOM05D001813 ORTHO05D004073 4.6e-39 164.5 104 69.2
SalBow6G6680 Salvia bowleyana HOM05D001813 ORTHO05D004073 4.6e-39 164.5 104 69.2
Aa31LG9G16010 Aethionema arabicum HOM05D001813 ORTHO05D004073 6.0e-39 164.1 104 71.2
CsaV3_5G039900 Cucumis sativus L. HOM05D001813 ORTHO05D004073 6.0e-39 164.1 104 70.2
Lsat_1_v5_gn_4_107960 Lactuca sativa HOM05D001813 ORTHO05D004073 6.0e-39 164.1 104 70.2
SalBow1G7856 Salvia bowleyana HOM05D001813 ORTHO05D004073 6.0e-39 164.1 104 70.2
SalBow7G2902 Salvia bowleyana HOM05D001813 ORTHO05D004073 6.0e-39 164.1 105 68.6
MSTRG.25497 Avicennia marina HOM05D001813 ORTHO05D004073 7.9e-39 163.7 104 69.2
DCAR_003713 Daucus carota HOM05D001813 ORTHO05D004073 7.9e-39 163.7 104 69.2
CDE04G0141 Ceratophyllum demersum HOM05D001813 ORTHO05D004073 1.0e-38 163.3 103 68.9
Nitab4.5_0002654g0030 Nicotiana tabacum HOM05D001813 ORTHO05D004073 1.0e-38 163.3 104 72.1
Nitab4.5_0010319g0010 Nicotiana tabacum HOM05D001813 ORTHO05D004073 1.0e-38 163.3 104 72.1
Ca_16425_v3 Cicer arietinum L. HOM05D001813 ORTHO05D004073 2.3e-38 162.2 104 71.2
ECA232G1733 Erigeron canadensis HOM05D001813 ORTHO05D004073 2.3e-38 162.2 104 70.2
Solyc11g040390.2 Solanum lycopersicum HOM05D001813 ORTHO05D004073 3.9e-38 161.4 104 67.3
Sopen11g018430 Solanum pennellii HOM05D001813 ORTHO05D004073 3.9e-38 161.4 104 67.3
THA.LOC104812709 Tarenaya hassleriana HOM05D001813 ORTHO05D004073 3.9e-38 161.4 104 71.2
CAN.G83.2 Capsicum annuum HOM05D001813 ORTHO05D004073 5.1e-38 161.0 104 69.2
Ca_11252_v3 Cicer arietinum L. HOM05D001813 ORTHO05D018408 5.1e-38 161.0 78 94.9
VMungo1383G2091 Vigna mungo HOM05D001813 ORTHO05D004073 6.7e-38 160.6 105 72.4
AT1G31230 Arabidopsis thaliana HOM05D001813 ORTHO05D004073 1.1e-37 159.8 104 70.2
Lj6g0010107 Lotus japonicus HOM05D001813 ORTHO05D004073 1.1e-37 159.8 104 67.3
Rhsim01G0004600 Rhododendron simsii HOM05D001813 ORTHO05D004073 1.1e-37 159.8 104 67.3
Rhsim03G0264300 Rhododendron simsii HOM05D001813 ORTHO05D004073 1.5e-37 159.5 129 59.7
unitig_37.g13078 Utricularia gibba HOM05D001813 ORTHO05D004073 1.5e-37 159.5 104 68.3
A09p35010 Brassica napus HOM05D001813 ORTHO05D004073 2.5e-37 158.7 104 70.2
CARHR030710 Cardamine hirsuta HOM05D001813 ORTHO05D004073 2.5e-37 158.7 104 69.2
Oeu028109.1 Olea europaea HOM05D001813 ORTHO05D004073 2.5e-37 158.7 105 66.7
Sp1g27040 Schrenkiella parvula HOM05D001813 ORTHO05D004073 2.5e-37 158.7 104 70.2
BcaC05g27153 Brassica carinata HOM05D001813 ORTHO05D004073 3.3e-37 158.3 104 69.2
C05p30420 Brassica napus HOM05D001813 ORTHO05D004073 3.3e-37 158.3 104 69.2
BolC5t31779H Brassica oleracea HOM05D001813 ORTHO05D004073 3.3e-37 158.3 104 69.2
Carub.0001s2963 Capsella rubella HOM05D001813 ORTHO05D004073 3.3e-37 158.3 104 69.2
BcaB07g32785 Brassica carinata HOM05D001813 ORTHO05D004073 7.4e-37 157.1 104 69.2
BraA09t39032Z Brassica rapa HOM05D001813 ORTHO05D004073 7.4e-37 157.1 104 69.2
HanXRQChr02g0051121 Helianthus annuus HOM05D001813 ORTHO05D004073 7.4e-37 157.1 104 67.3
AL1G49250 Arabidopsis lyrata HOM05D001813 ORTHO05D004073 2.8e-36 155.2 104 67.3
Zm00001eb177530 Zea mays HOM05D001813 ORTHO05D004073 2.8e-36 155.2 104 65.4
Thhalv10006741m.g Eutrema salsugineum HOM05D001813 ORTHO05D004073 6.3e-36 154.1 104 67.3
Aa31LG2G15160 Aethionema arabicum HOM05D001813 ORTHO05D004073 3.1e-35 151.8 103 68.9
SHI07493 Sapria himalayana HOM05D001813 ORTHO05D004073 4.1e-35 151.4 104 66.3
Zm00001eb097580 Zea mays HOM05D001813 ORTHO05D004073 1.5e-34 149.4 104 63.5
Os08g0342400 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D004073 2.0e-34 149.1 104 64.4
Mapoly0016s0043 Marchantia polymorpha HOM05D001813 ORTHO05D004073 4.5e-34 147.9 104 60.6
Os09g0294000 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D004073 5.9e-34 147.5 104 63.5
Zm00001eb309070 Zea mays HOM05D001813 ORTHO05D004073 7.6e-34 147.1 104 61.5
Ciclev10023926m.g Citrus clementina HOM05D001813 ORTHO05D004073 1.6e-31 139.4 89 69.7
SMO358G0576 Selaginella moellendorffii HOM05D001813 ORTHO05D004073 7.9e-31 137.1 104 57.7
AagrBONN_evm.TU.Sc2ySwM_117.4081 Anthoceros agrestis HOM05D001813 ORTHO05D004073 1.4e-30 136.3 105 61.9
Ah.07g204380 Amaranthus hybridus HOM05D001813 ORTHO05D004073 6.7e-30 134.0 79 68.4
Pp3c25_5870 Physcomitrium patens HOM05D001813 ORTHO05D004073 7.4e-29 130.6 104 55.8
Hund21050 Selenicereus undatus HOM05D001813 ORTHO05D004073 2.8e-28 128.6 79 67.1
Pp3c16_8500 Physcomitrium patens HOM05D001813 ORTHO05D004073 3.7e-28 128.3 104 54.8
Oeu023196.1 Olea europaea HOM05D001813 ORTHO05D004073 9.1e-27 123.6 76 63.2
Pp3c25_5840 Physcomitrium patens HOM05D001813 ORTHO05D004073 1.5e-26 122.9 106 50.9
Mapoly0016s0044 Marchantia polymorpha HOM05D001813 ORTHO05D004073 3.4e-26 121.7 104 50.0
Pp3c5_15490 Physcomitrium patens HOM05D001813 ORTHO05D004073 8.5e-25 117.1 104 50.0
CSS0003534 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D004073 6.1e-23 110.9 68 70.6
Cre18.g749447 Chlamydomonas reinhardtii HOM05D001813 ORTHO05D004073 6.1e-23 110.9 104 49.0
Lsat_1_v5_gn_4_118581 Lactuca sativa HOM05D001813 ORTHO05D002808 7.9e-23 110.5 76 59.2
CBR_g26412 Chara braunii HOM05D001813 ORTHO05D004073 1.5e-21 106.3 88 52.3
SGA_v2.0_scaffold147G36298 Striga asiatica HOM05D001813 ORTHO05D004073 1.1e-19 100.1 64 68.8
Lsat_1_v5_gn_6_29841 Lactuca sativa HOM05D001813 ORTHO05D018408 2.6e-18 95.5 63 57.1
MCO10G303 Micromonas commoda HOM05D001813 ORTHO05D004073 7.7e-18 94.0 109 42.2
PRCOL_00002501 Prasinoderma coloniale HOM05D001813 ORTHO05D004073 7.7e-18 94.0 107 45.8
HPP92_021925 Vanilla planifolia HOM05D001813 ORTHO05D004073 4.2e-16 88.2 66 60.6
Cre02.g109550 Chlamydomonas reinhardtii HOM05D001813 ORTHO05D004073 1.4e-11 73.2 110 36.4
Lsat_1_v5_gn_4_106380 Lactuca sativa HOM05D001813 ORTHO05D230349 1.9e-08 62.8 34 73.5
MCO04G115 Micromonas commoda HOM05D001813 ORTHO05D004073 1.2e-07 60.1 127 35.4
A09p33090 Brassica napus HOM05D000847 ORTHO05D018757 3.0e-06 55.5 100 34.0


User provided reference genes

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