Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06999_v3 Cicer arietinum L. HOM05D001331 ORTHO05D001157 8.3e-302 1039.6 549 100.0
Medtr7g031420 Medicago truncatula HOM05D001331 ORTHO05D001157 9.1e-99 365.2 593 42.8
Psat3g172880 Pisum sativum HOM05D001331 ORTHO05D001157 2.0e-90 337.4 578 41.7
Lj1g0014933 Lotus japonicus HOM05D001331 ORTHO05D001157 1.5e-61 241.5 768 31.4
arahy.Tifrunner.gnm1.ann1.ZV22RA Arachis hypogaea HOM05D001331 ORTHO05D001157 1.6e-58 231.5 532 36.5
Phvul.001G096000 Phaseolus vulgaris HOM05D001331 ORTHO05D001157 6.6e-49 199.5 440 36.1
Lalb_Chr22g0360501 Lupinus albus HOM05D001331 ORTHO05D001157 2.2e-44 184.5 554 31.4
QL02p072043 Quercus lobata HOM05D001331 ORTHO05D001157 3.2e-27 127.5 456 30.5
CiPaw.03G052700 Carya illinoinensis HOM05D001331 ORTHO05D001157 3.6e-23 114.0 546 29.3
Glyma.16G060000 Glycine max HOM05D001331 ORTHO05D001157 4.8e-23 113.6 457 27.8
Glyma.19G087000 Glycine max HOM05D001331 ORTHO05D001157 1.1e-22 112.5 266 35.0
VMungo1383G0313 Vigna mungo HOM05D001331 ORTHO05D001157 2.4e-22 111.3 300 32.3
Prupe.3G302600 Prunus persica HOM05D001331 ORTHO05D001157 2.2e-20 104.8 535 28.0
CSS0001891 Camellia sinensis var. sinensis HOM05D005595 ORTHO05D006962 6.0e-18 96.7 229 34.1
CSS0043172 Camellia sinensis var. sinensis HOM05D001331 ORTHO05D001157 6.0e-18 96.7 229 35.4
Manes.15G158100 Manihot esculenta HOM05D001331 ORTHO05D001157 6.0e-18 96.7 468 26.9
Potri.017G067400 Populus trichocarpa HOM05D001331 ORTHO05D001157 6.0e-18 96.7 425 27.8
Haze_14837 Corylus avellana HOM05D001331 ORTHO05D001157 1.3e-17 95.5 587 26.1
Ciclev10014314m.g Citrus clementina HOM05D001331 ORTHO05D001157 2.5e-16 91.3 403 27.5
Dinv25676 Davidia involucrata HOM05D001331 ORTHO05D001157 4.3e-16 90.5 256 32.0
Actinidia30892 Actinidia chinensis HOM05D001331 ORTHO05D001157 1.6e-15 88.6 250 32.4
Sabra17G0062300 Salix brachista HOM05D001331 ORTHO05D001157 1.8e-14 85.1 448 26.8
Dinv33363 Davidia involucrata HOM05D001331 ORTHO05D001157 1.5e-13 82.0 175 33.1
MD17G1015200 Malus domestica HOM05D001331 ORTHO05D001157 2.6e-13 81.3 553 26.6
Sed0009999 Sechium edule HOM05D001331 ORTHO05D001157 4.5e-13 80.5 440 25.7
Thecc.08G160900 Theobroma cacao HOM05D001331 ORTHO05D001157 1.7e-12 78.6 218 33.0
AL7G48780 Arabidopsis lyrata HOM05D001331 ORTHO05D001157 2.2e-12 78.2 525 25.9
FvH4_6g53040 Fragaria vesca HOM05D001331 ORTHO05D001157 4.9e-12 77.0 458 24.9
Hma1.2p1_1219F.1_g267890 Hydrangea macrophylla HOM05D001331 ORTHO05D001157 6.5e-12 76.6 279 28.7
CANSAT64G1743 Cannabis sativa HOM05D001331 ORTHO05D001157 1.1e-11 75.9 187 34.8
Nn4g22389 Nelumbo nucifera HOM05D001331 ORTHO05D001157 1.1e-11 75.9 266 27.8
Gohir.A05G246800 Gossypium hirsutum HOM05D001331 ORTHO05D001157 7.1e-11 73.2 352 29.0
Duzib093G1964 Durio zibethinus HOM05D001331 ORTHO05D001157 1.2e-10 72.4 360 26.9
CARHR213690 Cardamine hirsuta HOM05D001331 ORTHO05D001157 2.1e-10 71.6 506 24.1
Rhsim08G0045100 Rhododendron simsii HOM05D001331 ORTHO05D001157 2.1e-10 71.6 503 25.2
Thhalv10027644m.g Eutrema salsugineum HOM05D001331 ORTHO05D001157 2.7e-10 71.2 540 25.4
RcHm_v2.0_Chr2g0174831 Rosa chinensis HOM05D001331 ORTHO05D001157 3.5e-10 70.9 555 23.6
AT5G40840 Arabidopsis thaliana HOM05D001331 ORTHO05D001157 4.6e-10 70.5 477 26.0
Gorai.009G259300 Gossypium raimondii HOM05D001331 ORTHO05D001157 6.0e-10 70.1 332 30.4
FvH4_6g53050 Fragaria vesca HOM05D001331 ORTHO05D001157 1.0e-09 69.3 196 26.0
FAN09G0670 Fragaria x ananassa HOM05D001331 ORTHO05D001157 1.3e-09 68.9 196 26.0
TAR629G1584 Trochodendron aralioides HOM05D001331 ORTHO05D001157 2.3e-09 68.2 109 39.4
Gohir.D05G248300 Gossypium hirsutum HOM05D001331 ORTHO05D001157 3.0e-09 67.8 330 28.5
RcHm_v2.0_Chr2g0174821 Rosa chinensis HOM05D001331 ORTHO05D001157 3.9e-09 67.4 448 25.2
Sopen02g038580 Solanum pennellii HOM05D001331 ORTHO05D001157 6.7e-09 66.6 433 25.6
TAR622G0469 Trochodendron aralioides HOM05D001331 ORTHO05D001157 1.9e-08 65.1 292 26.0
CAN.G473.78 Capsicum annuum HOM05D001331 ORTHO05D001157 2.5e-08 64.7 424 24.5
Carub.0007s3466 Capsella rubella HOM05D001331 ORTHO05D001157 3.3e-08 64.3 424 26.9
Solyc02g093930.4 Solanum lycopersicum HOM05D001331 ORTHO05D001157 4.3e-08 63.9 430 26.0
COL.COLO4_13736 Corchorus olitorius HOM05D001331 ORTHO05D001157 5.7e-08 63.5 507 24.1
Cc07_g00590 Coffea canephora HOM05D001331 ORTHO05D001157 1.3e-07 62.4 492 21.5
BraA04t17054Z Brassica rapa HOM05D001331 ORTHO05D001157 1.6e-07 62.0 469 25.8
vmacro00334 Vaccinium macrocarpon HOM05D001331 ORTHO05D001157 6.3e-07 60.1 488 23.4
EL10Ac5g12161 Beta vulgaris HOM05D001331 ORTHO05D001157 1.1e-06 59.3 527 22.4
BcaB02g07925 Brassica carinata HOM05D001331 ORTHO05D001157 1.1e-06 59.3 419 24.8
MD09G1015100 Malus domestica HOM05D001331 ORTHO05D001157 1.1e-06 59.3 495 24.4
FAN05G4290 Fragaria x ananassa HOM05D001331 ORTHO05D001157 1.8e-06 58.5 479 25.7
A04p13890 Brassica napus HOM05D001331 ORTHO05D001157 4.1e-06 57.4 173 31.8
CsaV3_6G001130 Cucumis sativus L. HOM05D001331 ORTHO05D001157 4.1e-06 57.4 500 24.4
Hund11264 Selenicereus undatus HOM05D001331 ORTHO05D001157 4.1e-06 57.4 208 29.8
MELO3C008211.2 Cucumis melo HOM05D001331 ORTHO05D001157 6.9e-06 56.6 416 24.3
QL02p072114 Quercus lobata HOM05D001331 ORTHO05D001157 6.9e-06 56.6 317 24.6
Sp7g01090 Schrenkiella parvula HOM05D001331 ORTHO05D001157 6.9e-06 56.6 468 25.6
TWI12G0610 Tripterygium wilfordii HOM05D001331 ORTHO05D001157 6.9e-06 56.6 448 23.7


User provided reference genes

Program Settings