Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 6.6e-290 1000.0 497 100.0
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 7.8e-275 949.9 497 94.4
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 3.1e-271 937.9 497 93.4
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 3.1e-263 911.4 495 90.5
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 4.9e-261 904.0 495 90.5
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 8.4e-261 903.3 495 89.3
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 8.4e-261 903.3 495 89.5
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 1.9e-260 902.1 495 89.9
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.6e-259 899.0 497 88.3
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.5e-257 892.5 492 88.4
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 1.9e-257 892.1 495 88.1
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 3.8e-245 851.3 495 85.1
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 1.4e-244 849.4 494 83.8
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 1.9e-244 849.0 494 84.4
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 2.5e-244 848.6 494 84.8
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.2e-244 848.2 493 83.8
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 5.5e-244 847.4 493 83.8
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 1.6e-243 845.9 494 84.0
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 4.6e-243 844.3 494 84.0
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.0e-243 844.0 493 83.4
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 7.9e-243 843.6 495 84.0
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 2.3e-242 842.0 495 83.6
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 3.9e-242 841.3 493 83.8
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 8.7e-242 840.1 494 83.8
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 8.7e-242 840.1 487 85.2
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.1e-241 839.7 493 83.4
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 2.5e-241 838.6 494 83.4
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 9.6e-241 836.6 486 85.6
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.6e-241 836.6 493 83.4
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 3.7e-240 834.7 493 83.6
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 8.2e-240 833.6 492 83.5
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.4e-239 832.8 494 82.6
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 2.4e-239 832.0 494 83.0
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 3.1e-239 831.6 488 84.0
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.1e-239 831.6 495 83.2
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 5.3e-239 830.9 488 83.8
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 1.2e-238 829.7 492 83.1
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 2.0e-238 828.9 488 83.2
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 5.8e-238 827.4 495 82.4
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 5.8e-238 827.4 495 82.8
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 5.8e-238 827.4 496 82.3
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.0e-237 826.6 493 83.4
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.3e-237 826.2 495 82.6
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.7e-237 825.9 488 82.6
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 2.9e-237 825.1 488 83.2
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.5e-237 823.9 495 82.4
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 6.5e-237 823.9 493 82.6
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 6.5e-237 823.9 493 82.8
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 8.4e-237 823.5 493 81.1
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.1e-236 823.2 495 82.4
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.1e-236 823.2 490 82.4
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 3.2e-236 821.6 495 81.0
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 3.2e-236 821.6 495 82.4
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 4.2e-236 821.2 532 78.2
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 5.5e-236 820.8 495 82.0
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.2e-235 819.7 495 82.2
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 2.1e-235 818.9 493 82.2
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 3.5e-235 818.1 496 80.6
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 4.6e-235 817.8 489 82.8
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 7.9e-235 817.0 488 82.4
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.8e-234 815.8 492 80.5
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 5.1e-234 814.3 495 81.0
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 6.7e-234 813.9 525 77.9
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 8.7e-234 813.5 493 80.3
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.9e-233 812.4 486 82.1
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 1.9e-233 812.4 499 80.4
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 3.3e-233 811.6 493 80.5
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 7.4e-233 810.4 503 80.3
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.6e-232 809.3 492 79.9
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.8e-232 808.5 494 80.6
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 3.7e-232 808.1 473 83.1
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 3.1e-231 805.1 487 80.7
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.5e-230 802.7 497 80.5
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 3.4e-230 801.6 470 83.2
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 4.5e-230 801.2 493 79.5
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 2.9e-229 798.5 499 79.2
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 1.4e-228 796.2 488 80.7
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.4e-228 796.2 487 80.7
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 2.5e-228 795.4 493 78.9
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 7.2e-228 793.9 487 80.3
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 9.4e-228 793.5 488 80.3
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 6.1e-227 790.8 487 80.1
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 6.1e-227 790.8 496 78.4
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 2.3e-226 788.9 487 79.9
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 3.9e-226 788.1 488 80.1
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 8.8e-226 786.9 491 79.2
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 8.8e-226 786.9 489 79.1
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 8.8e-226 786.9 496 79.2
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 1.1e-225 786.6 487 80.1
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 1.5e-225 786.2 486 78.8
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 2.0e-225 785.8 485 80.4
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 3.3e-225 785.0 487 79.9
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.3e-225 785.0 487 78.2
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 2.2e-224 782.3 487 79.7
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.7e-224 781.6 487 79.5
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.7e-224 781.6 487 79.3
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 3.7e-224 781.6 495 78.6
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.8e-223 779.2 486 79.0
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 3.1e-223 778.5 488 78.3
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 2.9e-221 771.9 486 79.0
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.1e-220 770.0 509 76.2
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.4e-220 769.6 489 77.1
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 3.0e-218 761.9 489 77.1
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 3.7e-216 755.0 389 96.4
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 4.8e-216 754.6 441 83.7
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 2.0e-209 732.6 434 82.0
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 3.3e-209 731.9 435 84.1
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 4.4e-209 731.5 437 82.2
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 9.7e-209 730.3 502 76.1
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 6.3e-208 727.6 441 80.0
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 1.8e-207 726.1 492 74.2
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.5e-206 721.8 441 82.1
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 2.1e-203 712.6 490 71.8
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 1.8e-202 709.5 442 79.9
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.8e-199 699.5 484 72.7
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 1.4e-194 683.3 492 67.9
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.2e-185 653.7 497 69.0
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 2.9e-184 649.0 492 68.3
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.0e-183 644.4 471 70.9
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 5.6e-180 634.8 405 77.3
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.4e-178 630.2 383 81.7
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.3e-176 623.6 380 81.1
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.8e-170 603.2 508 61.2
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 7.5e-169 597.8 391 78.0
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 8.4e-160 567.8 461 67.0
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 1.0e-157 560.8 346 80.3
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 4.7e-155 552.0 383 74.4
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.4e-143 513.8 528 51.5
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.5e-135 485.3 267 88.8
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 3.7e-123 446.0 466 51.7
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 3.3e-116 422.9 238 85.7
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.4e-114 417.5 239 83.7
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.1e-106 388.3 228 85.1
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.7e-104 384.0 301 66.1
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 6.5e-104 382.1 238 75.2
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 9.4e-103 378.3 432 50.0
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.5e-100 370.9 481 47.0
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 4.8e-99 365.9 303 66.7
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 6.3e-99 365.5 252 73.0
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.4e-93 347.8 238 71.4
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.2e-93 345.9 310 60.3
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 5.7e-84 315.8 236 67.4
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 7.2e-79 298.9 251 65.3
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.4e-77 294.7 160 91.2
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.6e-54 216.9 259 49.4
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 6.0e-49 199.5 148 66.9
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 3.6e-46 190.3 103 87.4
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 6.8e-45 186.0 96 90.6
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 4.4e-44 183.3 297 40.7
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.1e-42 178.7 151 64.2
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 2.4e-42 177.6 104 81.7
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 7.8e-41 172.6 143 61.5
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 4.3e-39 166.8 105 76.2
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 6.9e-37 159.5 148 58.1
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 5.1e-32 143.3 75 90.7
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 1.1e-31 142.1 85 82.4
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 3.4e-28 130.6 157 48.4
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 1.7e-27 128.3 79 75.9
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 3.1e-21 107.5 93 61.3
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 2.4e-18 97.8 71 66.2
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.1e-13 82.4 61 72.1
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 1.7e-11 75.1 36 91.7
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 1.4e-10 72.0 49 69.4
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 4.6e-09 67.0 51 64.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 3.9e-08 63.9 30 90.0
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 4.3e-07 60.5 38 78.9


User provided reference genes

Program Settings