Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 0.0e+00 1639.0 822 100.0
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 0.0e+00 1330.1 827 82.0
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 0.0e+00 1311.6 831 81.0
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 0.0e+00 1303.9 849 78.9
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 0.0e+00 1174.8 834 72.2
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 0.0e+00 1158.3 831 71.5
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 0.0e+00 1091.3 828 67.5
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 0.0e+00 1083.6 823 68.4
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 7.5e-299 1030.4 795 65.8
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 1.7e-295 1019.2 834 64.9
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 5.0e-295 1017.7 795 65.2
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 5.8e-259 897.9 619 75.3
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 9.7e-246 854.0 834 56.5
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 4.1e-244 848.6 656 69.1
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 2.3e-215 753.1 506 76.5
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 7.2e-201 704.9 801 49.2
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 4.0e-199 699.1 801 48.9
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 6.8e-199 698.4 803 48.8
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.3e-197 694.1 843 48.6
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.4e-191 674.1 806 47.1
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 6.8e-191 671.8 853 47.1
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 3.7e-189 666.0 832 46.9
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 4.9e-189 665.6 789 48.8
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 2.3e-186 656.8 837 44.9
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 2.0e-182 643.7 818 46.5
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 2.6e-182 643.3 805 47.0
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 3.4e-182 642.9 807 45.5
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 4.4e-182 642.5 803 47.4
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 9.8e-182 641.3 829 46.2
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 2.2e-181 640.2 797 47.4
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.4e-180 636.7 837 45.9
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.8e-175 620.5 841 45.9
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 4.0e-175 619.4 813 44.0
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 5.8e-174 615.5 859 45.6
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.6e-168 597.4 1000 38.9
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 8.1e-168 595.1 797 44.3
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.1e-167 594.7 829 42.8
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 3.2e-164 583.2 912 40.2
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 6.0e-163 578.9 790 43.2
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 8.7e-162 575.1 834 41.7
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 2.5e-161 573.5 1032 36.8
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.1e-160 570.5 852 42.3
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 2.8e-160 570.1 965 38.0
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.6e-160 569.7 905 39.8
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.3e-157 561.2 845 40.0
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.1e-156 558.1 812 41.7
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 4.2e-156 556.2 830 40.2
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 4.6e-155 552.7 939 39.1
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 5.8e-150 535.8 848 40.7
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 4.2e-148 529.6 790 41.3
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.2e-147 528.1 800 41.2
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 6.0e-147 525.8 758 42.2
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.3e-144 518.1 795 40.9
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.3e-144 518.1 783 40.2
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.1e-143 515.0 838 39.9
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.1e-143 515.0 950 36.3
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.1e-143 515.0 813 39.9
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.5e-142 511.1 828 38.6
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 3.4e-142 510.0 830 39.5
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 7.9e-139 498.8 788 39.8
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 7.9e-139 498.8 841 39.4
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 6.2e-136 489.2 821 38.9
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.4e-135 487.3 561 48.0
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 3.1e-135 486.9 826 39.1
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 5.3e-135 486.1 826 38.7
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.0e-134 484.2 811 39.1
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 4.5e-134 483.0 823 38.5
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.0e-133 481.9 794 37.3
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 8.4e-133 478.8 798 40.6
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 8.4e-133 478.8 844 37.7
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 4.2e-132 476.5 802 39.5
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 5.5e-132 476.1 824 38.0
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 3.5e-131 473.4 834 38.0
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 5.1e-130 469.5 757 39.4
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.9e-129 467.6 831 38.0
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 4.3e-129 466.5 821 38.2
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 4.3e-129 466.5 807 38.5
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 9.7e-129 465.3 839 38.7
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 9.0e-127 458.8 841 36.0
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 9.0e-127 458.8 837 38.5
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 2.6e-126 457.2 661 42.2
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 3.4e-126 456.8 821 35.9
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.9e-124 451.1 791 37.4
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 5.1e-122 443.0 843 34.3
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 1.7e-120 438.0 810 36.4
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.7e-120 436.8 847 36.0
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.1e-119 433.7 837 35.4
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 5.3e-119 433.0 817 35.9
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.5e-116 424.1 798 36.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 9.4e-116 422.2 894 34.5
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 1.6e-115 421.4 816 34.8
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 6.7e-114 416.0 860 35.6
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 5.0e-109 399.8 669 38.7
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 8.5e-109 399.1 725 39.0
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 8.0e-107 392.5 759 34.5
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.4e-106 391.7 780 35.0
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.7e-104 384.8 796 34.5
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 2.0e-102 377.9 728 37.4
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 6.1e-99 366.3 862 32.5
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.1e-95 355.5 783 33.3
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.2e-94 352.1 562 41.5
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.9e-93 347.4 484 43.6
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 9.5e-84 315.8 563 39.4
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.1e-79 300.4 462 40.3
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 7.8e-78 296.2 699 33.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.9e-76 291.6 570 35.4
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 5.8e-73 280.0 460 40.2
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 9.8e-73 279.3 845 29.1
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.7e-72 278.5 467 38.5
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 6.4e-72 276.6 472 39.6
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 2.4e-71 274.6 474 38.0
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 5.4e-71 273.5 475 38.9
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 2.0e-70 271.6 490 37.1
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.3e-69 268.9 496 38.5
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.0e-69 267.7 487 37.2
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 6.2e-67 260.0 532 34.2
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 1.1e-66 259.2 499 35.9
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 1.1e-66 259.2 499 35.9
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.3e-66 258.1 587 33.4
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.1e-66 257.7 787 30.9
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 8.9e-66 256.1 491 36.0
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 4.4e-65 253.8 463 36.9
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 1.4e-63 248.8 486 36.0
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.1e-62 245.0 470 35.5
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 2.1e-62 245.0 788 28.7
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 2.7e-62 244.6 815 27.1
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.7e-61 241.9 781 27.9
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 3.0e-61 241.1 507 33.7
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.6e-61 240.0 420 36.2
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 3.3e-60 237.7 777 28.2
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.8e-59 234.6 601 32.9
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 8.1e-59 233.0 821 28.3
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 3.1e-58 231.1 596 31.4
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 6.8e-58 229.9 593 31.5
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.2e-56 224.9 425 36.0
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.2e-56 224.9 343 38.5
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.1e-54 218.4 588 32.0
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 4.6e-54 217.2 636 30.5
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.7e-48 198.7 273 45.1
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 9.3e-47 193.0 514 31.5
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 1.6e-46 192.2 494 32.8
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 9.6e-44 183.0 500 30.2
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 6.9e-42 176.8 192 51.6
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 4.4e-41 174.1 277 40.8
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.3e-40 172.6 817 24.2
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 2.2e-40 171.8 478 28.9
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 7.6e-33 146.7 468 25.6
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 6.0e-30 137.1 384 32.8
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 6.7e-29 133.7 105 56.2
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 5.3e-26 124.0 367 32.2
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.3e-21 108.6 151 36.4
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 2.3e-21 108.6 102 46.1
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 6.7e-21 107.1 737 21.6
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.8e-19 101.7 128 46.9
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.9e-18 97.1 104 46.2
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.8e-13 82.4 73 47.9
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 5.1e-13 80.9 84 50.0
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.4e-10 72.0 120 31.7
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.0e-08 66.6 73 41.1
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 6.5e-08 63.9 78 41.0
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 1.1e-07 63.2 78 41.0
AagrBONN_evm.TU.Sc2ySwM_344.2808 Anthoceros agrestis HOM05D004295 ORTHO05D004901 3.2e-07 61.6 92 40.2


User provided reference genes

Program Settings