Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06284_v3 Cicer arietinum L. HOM05D006785 ORTHO05D006259 1.6e-116 423.3 310 100.0
Medtr5g091710 Medicago truncatula HOM05D006785 ORTHO05D006259 1.4e-80 303.9 312 79.5
TPR.G12660 Trifolium pratense HOM05D006785 ORTHO05D006259 4.7e-68 262.3 314 71.0
Psat2g015800 Pisum sativum HOM05D006785 ORTHO05D006259 1.8e-64 250.4 311 69.8
Lalb_Chr10g0106721 Lupinus albus HOM05D006785 ORTHO05D006259 3.0e-51 206.5 311 61.4
Glyma.02G287000 Glycine max HOM05D006785 ORTHO05D006259 4.1e-48 196.1 316 58.9
Lalb_Chr17g0348301 Lupinus albus HOM05D006785 ORTHO05D006259 7.0e-48 195.3 314 60.5
arahy.Tifrunner.gnm1.ann1.PX2Y9B Arachis hypogaea HOM05D006785 ORTHO05D006259 1.2e-39 167.9 319 51.4
VMungo0647G1995 Vigna mungo HOM05D006785 ORTHO05D006259 1.1e-37 161.4 315 48.9
arahy.Tifrunner.gnm1.ann1.W4MS3F Arachis hypogaea HOM05D006785 ORTHO05D006259 7.3e-37 158.7 316 53.5
Glyma.14G027900 Glycine max HOM05D006785 ORTHO05D006259 6.2e-36 155.6 316 51.9
Phvul.008G191300 Phaseolus vulgaris HOM05D006785 ORTHO05D006259 8.1e-36 155.2 326 46.0
ClCG02G018390 Citrullus lanatus HOM05D006785 ORTHO05D006259 9.9e-34 148.3 295 49.8
QL08p044083 Quercus lobata HOM05D006785 ORTHO05D006259 1.9e-32 144.1 289 53.3
TWI59G0461 Tripterygium wilfordii HOM05D006785 ORTHO05D006259 2.4e-32 143.7 311 49.8
CANSAT64G1891 Cannabis sativa HOM05D006785 ORTHO05D006259 4.6e-31 139.4 322 47.8
Haze_13495 Corylus avellana HOM05D006785 ORTHO05D006259 3.9e-30 136.3 326 53.7
Cfa021376 Carpinus fangiana HOM05D006785 ORTHO05D006259 6.6e-30 135.6 337 51.9
CsaV3_6G015830 Cucumis sativus L. HOM05D006785 ORTHO05D006259 8.6e-30 135.2 295 43.7
PGR042G2728 Punica granatum HOM05D006785 ORTHO05D006259 3.3e-29 133.3 320 41.9
MELO3C019688.2 Cucumis melo HOM05D006785 ORTHO05D006259 2.0e-26 124.0 295 51.5
LjContig00310g0014416 Lotus japonicus HOM05D006785 ORTHO05D006259 2.0e-26 124.0 349 42.1
Sed0007746 Sechium edule HOM05D006785 ORTHO05D006259 2.4e-24 117.1 238 45.0
Lalb_Chr05g0211951 Lupinus albus HOM05D006785 ORTHO05D006259 1.6e-23 114.4 152 47.4
MD09G1151900 Malus domestica HOM05D006785 ORTHO05D006259 1.6e-23 114.4 233 44.6
CiPaw.03G189000 Carya illinoinensis HOM05D006785 ORTHO05D006259 3.5e-23 113.2 337 41.2
MD17G1139500 Malus domestica HOM05D006785 ORTHO05D006259 1.3e-22 111.3 235 46.0
AT1G06530 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 8.7e-22 108.6 238 32.8
Manes.02G084200 Manihot esculenta HOM05D006785 ORTHO05D006259 1.5e-21 107.8 326 33.4
Carub.0001s0590 Capsella rubella HOM05D006785 ORTHO05D006259 1.9e-21 107.5 236 34.7
arahy.Tifrunner.gnm1.ann1.SE4LXZ Arachis hypogaea HOM05D006785 ORTHO05D006259 1.6e-20 104.4 238 41.6
RcHm_v2.0_Chr2g0151481 Rosa chinensis HOM05D006785 ORTHO05D006259 9.0e-19 98.6 320 45.3
Manes.01G127500 Manihot esculenta HOM05D006785 ORTHO05D006259 2.6e-18 97.1 304 30.6
Prupe.3G172600 Prunus persica HOM05D006785 ORTHO05D006259 2.6e-18 97.1 295 49.2
FAN14G2666 Fragaria x ananassa HOM05D006785 ORTHO05D006259 7.6e-18 95.5 315 42.9
THA.LOC104802276 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 1.3e-17 94.7 236 45.8
Sed0020726 Sechium edule HOM05D006785 ORTHO05D006259 2.2e-17 94.0 299 29.4
FAN02G2853 Fragaria x ananassa HOM05D006785 ORTHO05D006259 2.9e-17 93.6 316 42.1
FAN09G1973 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.9e-16 90.9 316 38.6
FAN05G2931 Fragaria x ananassa HOM05D006785 ORTHO05D006259 9.3e-16 88.6 316 37.7
Sp4g24990 Schrenkiella parvula HOM05D006785 ORTHO05D006259 9.3e-16 88.6 305 33.4
Actinidia32516 Actinidia chinensis HOM05D006785 ORTHO05D006259 1.6e-15 87.8 272 32.0
Atru.chr6.2094 Acer truncatum HOM05D006785 ORTHO05D006259 2.1e-15 87.4 239 46.9
BraA05t19307Z Brassica rapa HOM05D006785 ORTHO05D006259 3.5e-15 86.7 236 30.9
Cpa.g.sc50.80 Carica papaya HOM05D006785 ORTHO05D006259 6.0e-15 85.9 290 46.9
Gohir.A12G079000 Gossypium hirsutum HOM05D006785 ORTHO05D006259 6.0e-15 85.9 321 38.6
CSS0028256 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 2.3e-14 84.0 361 28.5
CSS0047125 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 2.3e-14 84.0 361 28.5
C04p03820 Brassica napus HOM05D006785 ORTHO05D006259 1.5e-13 81.3 233 30.0
BolC4t22018H Brassica oleracea HOM05D006785 ORTHO05D006259 4.3e-13 79.7 233 30.0
Aa31LG5G5980 Aethionema arabicum HOM05D006785 ORTHO05D006259 7.3e-13 79.0 229 43.7
Gorai.008G098200 Gossypium raimondii HOM05D006785 ORTHO05D006259 2.1e-12 77.4 321 35.8
Gohir.D12G068400 Gossypium hirsutum HOM05D006785 ORTHO05D006259 4.8e-12 76.3 321 36.8
AT3G58840 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 1.4e-11 74.7 224 39.7
Ciclev10032336m.g Citrus clementina HOM05D006785 ORTHO05D006259 1.4e-11 74.7 224 46.4
Dinv07090 Davidia involucrata HOM05D006785 ORTHO05D006259 3.1e-11 73.6 325 36.6
Eucgr.A01969 Eucalyptus grandis HOM05D006785 ORTHO05D006259 3.1e-11 73.6 325 34.2
Duzib147G0591 Durio zibethinus HOM05D006785 ORTHO05D006259 9.0e-11 72.0 236 42.8
AL1G16560 Arabidopsis lyrata HOM05D006785 ORTHO05D006259 1.2e-10 71.6 238 34.9
Thhalv10009835m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 1.2e-10 71.6 236 28.0
Carub.0005s2562 Capsella rubella HOM05D006785 ORTHO05D006259 1.5e-10 71.2 236 34.3
Nn3g20927 Nelumbo nucifera HOM05D006785 ORTHO05D006259 7.6e-10 68.9 258 30.2
Thecc.01G161700 Theobroma cacao HOM05D006785 ORTHO05D006259 3.8e-09 66.6 197 46.7
vmacro12460 Vaccinium macrocarpon HOM05D006785 ORTHO05D006259 3.8e-09 66.6 224 30.4
Sp1g05290 Schrenkiella parvula HOM05D006785 ORTHO05D006259 4.9e-09 66.2 156 42.3
Potri.005G201400 Populus trichocarpa HOM05D006785 ORTHO05D006259 3.2e-08 63.5 235 34.0
THA.LOC104800823 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 5.4e-08 62.8 204 27.9
Thhalv10006112m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 2.7e-07 60.5 229 27.1
Gohir.A11G224802 Gossypium hirsutum HOM05D006785 ORTHO05D006259 3.5e-07 60.1 228 31.6
arahy.Tifrunner.gnm1.ann1.34NIEK Arachis hypogaea HOM05D043406 ORTHO05D031604 6.0e-07 59.3 151 35.1
C05p04790 Brassica napus HOM05D006785 ORTHO05D006259 6.0e-07 59.3 136 47.8
Gohir.A05G378800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 6.0e-07 59.3 102 52.0
Gohir.D04G036800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.3e-06 58.2 102 52.0
arahy.Tifrunner.gnm1.ann1.IX2Y2N Arachis hypogaea HOM05D043406 ORTHO05D031604 2.3e-06 57.4 151 35.1
Gorai.012G041600 Gossypium raimondii HOM05D006785 ORTHO05D006259 2.3e-06 57.4 172 39.0
CARHR169250 Cardamine hirsuta HOM05D006785 ORTHO05D006259 3.9e-06 56.6 143 29.4
Duzib264G0099 Durio zibethinus HOM05D006785 ORTHO05D006259 5.1e-06 56.2 138 37.7
CARHR006150 Cardamine hirsuta HOM05D006785 ORTHO05D006259 6.7e-06 55.8 112 33.0


User provided reference genes

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