Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 0.0e+00 1122.1 580 100.0
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 7.2e-288 993.4 654 81.2
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 3.1e-283 978.0 654 80.1
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 8.0e-271 936.8 651 77.0
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 2.7e-266 921.8 653 75.7
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 5.9e-266 920.6 650 75.5
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 7.0e-259 897.1 651 73.9
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 3.3e-256 888.3 649 73.7
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 9.5e-256 886.7 603 78.4
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 3.0e-241 838.6 692 66.8
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 6.6e-241 837.4 692 66.9
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 7.8e-226 787.3 654 65.1
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.9e-224 782.7 654 64.8
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 1.2e-223 780.0 654 64.4
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.3e-220 770.0 653 64.3
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 1.4e-219 766.5 657 62.7
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 3.2e-219 765.4 654 62.5
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 5.4e-219 764.6 656 63.7
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 1.6e-218 763.1 655 63.8
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 2.1e-218 762.7 654 63.3
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 7.8e-218 760.8 646 63.3
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 2.3e-217 759.2 646 63.5
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.3e-217 759.2 659 63.0
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 6.6e-217 757.7 654 62.5
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 8.7e-217 757.3 651 63.0
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 2.1e-215 752.7 654 63.5
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 2.8e-215 752.3 654 63.6
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 8.1e-215 750.7 658 61.7
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 8.1e-215 750.7 654 62.8
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 3.1e-214 748.8 654 62.7
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 5.3e-214 748.0 657 61.0
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 9.0e-214 747.3 654 61.3
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 1.2e-213 746.9 652 62.0
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 2.6e-213 745.7 653 61.3
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 3.4e-213 745.3 654 62.2
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 3.4e-213 745.3 656 61.1
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 1.3e-212 743.4 658 61.2
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.3e-212 743.4 648 62.8
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 1.9e-211 739.6 662 60.7
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.9e-211 739.6 654 61.6
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 3.2e-211 738.8 657 62.9
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 3.2e-211 738.8 653 60.6
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 4.2e-211 738.4 649 62.7
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 4.2e-211 738.4 654 61.3
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.6e-210 736.5 660 60.0
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 3.5e-210 735.3 658 60.3
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 2.3e-209 732.6 648 61.1
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 3.0e-209 732.3 658 60.3
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 6.7e-209 731.1 660 59.7
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 2.5e-208 729.2 660 61.1
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 9.6e-208 727.2 654 59.9
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 1.6e-207 726.5 655 60.8
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 6.2e-207 724.5 656 60.2
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 1.1e-206 723.8 641 61.3
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 4.0e-206 721.8 645 60.2
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 1.5e-205 719.9 652 61.2
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 3.4e-205 718.8 643 60.7
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 5.8e-205 718.0 646 61.1
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 5.8e-205 718.0 655 59.7
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 2.2e-204 716.1 691 57.9
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 2.2e-204 716.1 660 59.1
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 8.4e-204 714.1 656 59.5
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 3.2e-203 712.2 654 59.8
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 7.1e-203 711.1 663 58.5
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 3.5e-202 708.8 647 58.9
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 1.8e-201 706.4 658 58.8
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 6.7e-201 704.5 662 58.8
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 4.0e-198 695.3 657 57.8
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.8e-196 688.7 655 57.6
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.0e-193 680.6 645 57.7
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 2.3e-193 679.5 657 57.8
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 3.9e-193 678.7 723 54.6
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.5e-192 676.8 656 56.6
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 2.5e-192 676.0 642 57.6
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 3.7e-191 672.2 587 62.9
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 1.5e-189 666.8 603 61.7
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 3.8e-188 662.1 667 54.7
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 7.2e-187 657.9 645 56.4
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 9.4e-187 657.5 680 56.2
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 5.1e-185 651.7 584 61.5
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 1.0e-180 637.5 615 57.2
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 1.0e-180 637.5 852 46.2
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 1.1e-179 634.0 665 54.0
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 1.9e-179 633.3 654 56.6
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 5.3e-174 615.1 659 54.3
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 7.7e-173 611.3 592 57.9
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.2e-172 609.8 653 53.4
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 6.1e-170 601.7 652 50.5
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.5e-163 580.5 683 51.0
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 3.5e-149 532.7 665 47.8
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 5.5e-147 525.4 477 61.4
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 2.3e-145 520.0 507 56.0
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 4.0e-145 519.2 846 41.7
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 8.9e-145 518.1 567 52.2
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 1.1e-134 484.6 476 56.9
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.5e-128 464.2 580 48.1
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 2.4e-126 456.8 466 55.8
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.5e-123 447.6 581 47.2
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.4e-102 377.1 430 51.2
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 1.6e-98 364.4 316 61.7
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 5.3e-97 359.4 345 56.2
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 4.2e-78 296.6 293 52.9
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 1.5e-72 278.1 262 62.6
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 7.9e-69 265.8 345 47.5
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 4.8e-66 256.5 198 68.2
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 5.9e-64 249.6 345 42.9
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 3.8e-63 246.9 202 64.4
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.9e-62 244.6 174 70.1
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 4.8e-58 229.9 336 41.4
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 6.3e-58 229.6 250 56.0
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.9e-54 218.0 165 64.8
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 4.7e-53 213.4 137 81.0
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 1.1e-49 202.2 241 56.4
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 4.7e-45 186.8 281 40.9
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.2e-43 182.2 137 65.7
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 5.7e-35 153.3 147 56.5
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 4.1e-33 147.1 94 75.5
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 5.4e-33 146.7 97 71.1
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 2.7e-32 144.4 155 56.8
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 4.5e-32 143.7 88 76.1
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 2.9e-31 141.0 161 52.8
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 4.3e-30 137.1 90 68.9
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 5.6e-30 136.7 96 67.7
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-29 135.2 198 42.4
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 2.8e-29 134.4 83 78.3
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 3.6e-29 134.0 78 82.1
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.2e-27 129.0 79 75.9
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 2.3e-23 114.8 65 90.8
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 4.7e-21 107.1 76 71.1
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 4.7e-21 107.1 161 39.8
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 4.7e-21 107.1 298 32.2
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 9.8e-19 99.4 165 40.0
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.2e-16 92.4 74 62.2
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.2e-16 92.4 54 85.2
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.0e-15 89.4 184 34.8
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 1.7e-15 88.6 83 59.0
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 1.1e-14 85.9 59 76.3
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 5.6e-14 83.6 61 72.1
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-12 79.3 72 58.3


User provided reference genes

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